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GBIF.org (08 September 2021) GBIF Occurrence Download https://doi.org/10.15468/dl.v9qj7q
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4Geotraces Raw sequence reads
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33Whale fall
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1Prince Edward Island marine metgenome Raw sequence reads
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1316S and 18S sequences from the epiphytic biofilm on leaves of Enhalus acroides
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74Polymetallic nodule field Targeted loci environmental
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11Eukaryotic protists Metagenome
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6Metazoan sequencing
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5Temperature shifts simulating secondary oil recovery
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96Uncultured eukaryotes Targeted Locus (Loci)
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5Tucurui_Metagenoma_MGRAST
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2Diatom Community Composition CCS Diel
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4Microbial ecology of archaeal community in sediment from adjacent waters of Rushan Bay
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3Evaluation of filtration and DNA extraction methods for environmental DNA biodiversity assessments across multiple trophic levels.
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19Queensland Marine Sediment
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2Protistan communities of the upper Arctic Ocean (18S SSU-rRNA Targeted Locus)
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1Active picoeukaryotes in the Eastern Mediterranean Sea
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2marine sediment metagenome Targeted Locus (Loci)
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1Sediment microbial community Random survey
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2Analysis of plasmidome of high-altitude lakes from the Andean Puna
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9Soil microbial diversity in the Maintenance of Exotic vs. Native Diversity experiment (depth study)
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4Marine metagenome ICM_LCR
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34marine metagenome Raw sequence reads
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5Protistan plankton diversity along salt gradient
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1This workpackage details only the prokaryote (Archaea and Bacteria) analyses for the MicroPolar project.
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11)sediments; 2) coral floc Metagenome
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10Coastal Marine Environment Targeted loci environmental
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26Bacteria community in the southern East China Sea
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20Fungal diversity in Sanya mangrove sediments, China
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1kMetabarcoding surveys of the Arctic marine environment
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17Soil metagenome from healthy and unhealthy agricultural soil
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23Magdalen Island Spatio Temporal (MIST) Raw sequence reads
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2Uncultured eukaryote community Targeted loci environmental
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4Composition and genetic diversity of picoeukaryotes in subtropical coastal waters as revealed by 454 sequencing-by-synthesis
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7Botany (UPS)
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1Marine metagenome ICM_ABR
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6ARK26/3_Station212 Targeted Locus (Loci)
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17Protists in Havre-aux-Maisons Lagoon, Magdalen Islands, Quebec, Canada
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1Microbial diversity and skin mucosal microbiota in farmed Atlantic salmon with ulcerative disorders, raw sequence reads
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9Microbial indicators of anthropogenic marine pollution identified by 16S and 18S metagenomic library analysis
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106Water and Sediment samples Targeted loci environmental
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7The Nanoeukaryotic plankton Raw sequence reads
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1Lake sediment sequencing
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216s data marine community of L4 station
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1DOS-1
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15The Indigo Project: a global citizen science Ocean survey
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15Microbial community structure and dynamics in the oxygen minimum zone of the Northeast subarctic Pacific Ocean
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123Temporal variation in pesticide biodegradation
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52Metagenomic community analysis of marine zooplankton using two plankton nets
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37Herbicide-incubated GBR lagoon microbiomes Targeted loci environmental
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168Macroalgal Morphology affects composition and settlement of microbial communities
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75Arctic microbiome along Svalbard Cross Shelf transects
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3Saltern microbial community diversity
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3Assessing the effects of salmon farming seabed enrichment using bacterial community diversity and high throughput sequencing
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92INVESTIGATING THE MICROBIAL EUKARYOTIC COMMUNITIES IN THE SURFACE WATERS OF THE ARAFURA SEA AND CORAL SEA
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216Marine Water Column Samples Targeted loci environmental
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1Prokaryotic community response to microalgal lysates
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121Protists community in the southern East China Sea
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1Svalbard Targeted Locus (Loci)
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1Benthic Ocean Acidification
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4microbial diversity Raw sequence reads
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1Raw sequence reads from soil relic DNA study
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117Effect of size fractionation and DNA extraction on the diversity and composition of prokaryotic and eukaryotic plankton community
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1Enhanced pyrene and benzo[a]pyrene degradation by plant root and SMFC
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1Marine sediment metagenome ICM_CRS
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126Diet analysis of Japanese sardine and Pacific round herring larvae
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6Marine sediment microbial communities in the presence of macrophytes
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28uncultured marine eukaryote Targeted loci environmental
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2California Current System Long Term Ecological Research P1604 (CCS_LTER_P1604) Targeted loci environmental
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4sediment metagenome Metagenome
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33Comparative study in validity of three regions of 18S-rRNA for eukaryote amplicon sequence analyses
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50Metagenome analysis of picoeukaryotes from surface seawater
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8Core MV1012-46.9-JPC2 aDNA metagenomes and negative control
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1Microbial community in marine sediments
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5Spirulina necromass degradartion in arctic marine sediments
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1Kallisti Limnes subsea pools Metagenome Study
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23Marine eukaryotes Targeted loci environmental
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5Antarctic Snow Algae 2014/15 16S and 18S Illumina Seq of snow algae communities around Ryder Bay, Antarctica
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17Equatorial Pacific Ocean Targeted loci environmental
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114CARBOM cruise 2013 flow cytometry sorted phytoplankton
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17Oxygen minimal zone Targeted loci environmental
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2University of California Santa Barbara Algae Collection
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19kCollections of Phytoplankton at Herbarium Berolinense, Berlin (B)
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1Environmental Foraminifera Raw sequence reads
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2Marine microbial eukaryote community analysis in Korea
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29sediment metagenome Raw sequence reads
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34Long-term survey of algae of the Lena Delta Wildlife Reserve including data on chemistry of waters
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4sediment metagenome Metagenome
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4marine metagenome Targeted Locus (Loci)
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1Norwegian Species Observation Service
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6Microbial community diversity in Arctic marine sediments and Planktonic microbial
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2Ocean sediment-basement interface Targeted Locus (Loci)
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10Microbial eukaryote Metagenome
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4Arctic benthos Targeted Locus (Loci)
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12Marine protists Metagenome
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8uncultured eukaryote Raw sequence reads
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2Depth dependent (0-5,000 m) and seasonal variability in archaeal community structure in the subarctic and subtropical western North Pacific.
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1marine sediment metagenome Raw sequence reads
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17Diversity of Microbial Eukaryotes in Sea Waters From Fildes Peninsula,King George Island, Antarctica
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54sediment metagenome Raw sequence reads
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37marine metagenome Metagenome
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17Impacts of crude oil and chemical dispersant exposure on marine microbial biofilm formation and steel corrosion
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17Sediment Microcosm Metagenome
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17Microbial diversity in the Benguela coastal upwelling system as derived from 16S rRNA sequencing and RNA Stable Isotope Probing (SIP)
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10Mariana and Kermadec Trench sediment 16S rRNA gene sequencing
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66ARMS Jeddah sample Raw sequence reads
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64Microbial communities associated with Eurasian watermilfoil, water and sediment
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2water sample Raw sequence reads
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4Metagenomics of Brava and Tebenquiche lakes microbial mats
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162Marine invertebrate collection NTNU University Museum
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4uncultured prokaryote Targeted loci environmental
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9ADDOMEx
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28Bermuda Atlantic Time-series Study metagenomes
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1Microbial diversity in the Tongyeong-Geoje coastal area of Korea2
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25Submarine Ligurian Canyons Water Prokaryotic and Protist Communities
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67Environmental zooplankton Targeted Locus (Loci)
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3marine metagenome Raw sequence reads
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2Eukaryote diversity assessment of sediments of the Western English Channel
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81ADDOMEx Tier 3 Experiments: Mesocosm Si with Gulf of Mexico coastal waters
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2Natural Resources Wales Regional Data : Mid-Wales
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11Diversity of microbial community (bacteria, micro-eukaryotes and fungi) in the Passage of Lascaux Cave.
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3Marine Sediment from the Berkeley Bay Targeted Locus (Loci)
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92Hydrate Ridge, OR - Deep sea cold seep ecosystem Targeted Locus (Loci)
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1Marine bacterial, archaeal and eukaryotic diversity and community structure on the continental shelf of the Western Antarctic Peninsula
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4envinronment Metagenome
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987UPCB - Herbário do Departamento de Botânica
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4Microbial eukaryotes in an Arctic under-ice spring bloom north of Svalbard.
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10Shotgun Metagenomic Sequencing of the Arctic Ocean during Winter-Spring Transition
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7VAG Mine Pit Pond Metagenome
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54ECOPOT_2: Phytoplankton in Flemish waterbodies
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1Socompa Lake Stromatolite Shotgun Metagenomic Sequencing
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26uncultured marine picoeukaryote strain:Peuk_V4_NWP2 Raw sequence reads
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2Microbiome of St. Lawrence estuary sediments
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13Gulf of Mexico open ocean Targeted Locus (Loci)
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3Metagenomic investigation of the coastal region of south Gujarat using soil sample - Nargol, Umargam and Dandi
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2Assessing the microbial diversity in Cape Comorin ocean water
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2216S data describing Antarctic benthic sediment
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130California Current Cruise CCE-P1408 Process Cruise #6
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6Northern Gulf of Mexico Hypoxia can Alter Sediment Communities of Nitrifying Archaea
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147Protist Diversity in the East China Sea
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1rRNA, rDNA bacteria thaw ponds Targeted loci environmental
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2ocean bacteria Metagenomic assembly
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335Nutrient addition mesocosm experiment Targeted Locus (Loci)
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62Eukaryotic natural population from Northern Baffin Bay - Raw sequence reads
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34Surface ocean Targeted Locus (Loci)
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2Swan lake bacteria Raw sequence reads
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1Marine methane seep Targeted Locus (Loci)
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1Survey and monitoring records for Scottish Wildlife Trust reserves from reserve convenors and Trust volunteers - Unassessed data
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4Microbial communities associated with Juncus roemerianus and Spartina alterniflora vegetated sediments in Louisiana saltmarshes
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1Characteristics of bacterial communities in the deep sediment Lake Baikal from the regions with oil and gases discharging
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2ETNP Targeted Locus (Loci)
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10Protists tag sequencing of 18S rRNA HV 9
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2Canada Basin Metagenome
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201Plant niche rather than soil or species shapes the microbiota
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53Bernice P. Bishop Museum
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2Uncultured marine eukaryotes Targeted Locus (Loci)
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9Geographically tagged INSDC sequences
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91Bacterial 16s Amplicon Sequencing of the Atlantic Ocean
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2Marine metagenome ICM_AWP
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1Bacteria Metagenome
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3Global phylogeography survey of thermophilic spores in marine sediments.
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1How much do we know about marine metazoan biodiversity? Recent disclosures using second generation sequencing.
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46Microbial eukaryotes
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1Temporal dynamics of the particle-attached and free-living microbial communities from coastal seawater
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2Marine sediment metagenome ICM_FIS
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7Gulf Oil Spill underwater oil plume samples Targeted Locus (Loci)
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2Marine phytoplankton Metagenome
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3Meiobenthos nSSU metagenetic meiobenthic data
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16Abundance, diversity and distribution of Legionellales in wet environments in Sweden
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145Naturalis Biodiversity Center (NL) - Micropaleontology
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7Phaeobacter inhibens host-attached and free-living communities
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48Diet analysis of Pacific Bluefin Tuna larvae
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2Fringing reef Metagenome
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1Coral metagenome ICM_CCB
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281SOLA Raw sequence reads
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52Sea spray aerosols at Three California Beaches
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57Southern Ocean microorganisms Targeted Locus (Loci)
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115Exploring Fronts With Multiple Robots Schmidt Ocean Institute Cruise to the Pacific Ocean in 2018
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1kArctic Ocean Diversity
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79North Sea plastic incubation and reference communities, raw sequence reads
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2Composición del fitoplancton de la Isla Cayo Serranilla durante la Expedición Seaflower 2017 - Proyecto Colombia BIO
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2Marine metagenome ICM_DOF
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31Lund Botanical Museum (LD)
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9Global Ocean Sampling Expedition
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3Natural History Museum (London) Collection Specimens
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2Archaea 16S 01-13 Genome sequencing and assembly
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1Bacterial communities in sandy sediment at submarine volcanic vents off Panarea Island (Italy)
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32Marine metagenome ICM_JRV
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3Microbial biogeography of French caves
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6Environmental eukaryotes Metagenome
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9Saltern of Margherita di Savoia Metagenome
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2kGrethe Hasle Diatom Collection
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83River Macrophytes Database
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3Suffolk Biodiversity Information Service (SBIS) Dataset
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7Shotgun Metagenome Sequencing of Lake Soyang
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1DEEPEND: Microbiome and bacterioplankton rRNA gene sequence data collected from Gulf of Mexico seawater samples. Cruises DP03 and DP04 from Jan 2016 - December 2016
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580anchialine metagenome Raw sequence reads
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8Amplicon-Based Illumina Sequencing Reveals High Diversity of Phytoplankton in the Coastal Waters of Qinhuangdao
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19Short-term interaction of pyrene and cadmium in prokaryotic community in coastal sediment microcosms
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2kNahant Collection
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1Foraminifera 18S rDNA and rRNA diversity for fish farms biomonitoring
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227“Phytoplankton and Zooplankton data collected during the Black Sea cruises of UkrSCES R/V "Georgyi Ushakov" in 1992”
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1Narragansett Bay, RI Sediments Targeted Locus (Loci)
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2rDNA amplicon sequencing of Western North Atlantic microbial community
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47Paleobiology Database
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18Structure and function of picoplankton and virus communities along zonal gradients in the South Pacific Ocean
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198Zooplankton communities in the coastal water of northeastern Hokkaido
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7Metagenetic analysis of the 18S nuclear small subunit ribosomal RNA gene of a mixed zooplankton assemblage was carried out using the 454 pyrosequencing platform.
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74Coral-associated bacteria demonstrate phylosymbiosis and cophylogeny
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3Microbial eukaryotes Metagenome
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1Diversity, Ecology and Biogeochemistry of cyst-forming acantharia (Radiolaria) in the oceans
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1Nanticoke Harbour, ON, Canada (plankton SSU 454 sequencing)
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116S rRNA Analysis of Osaka Bay Microbiomes
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110uncultured prokaryote Targeted loci environmental
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6Microbial Community Diversity Response to a Changing Arctic Ocean
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47Microbial Processes and Biodiversity: OCEAN
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1Microbial diversity of Oslo Fjord Pockmark sediments
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523EMOSE (2017) Inter-Comparison of Marine Plankton Metagenome Analysis Methods
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1marine sediment metagenome Raw sequence reads
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8Marine fungi Raw sequence reads
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1Vertical stratification of microbial communities in the Red Sea revealed by 16S rDNA pyrosequencing
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19blocking PCR amplification of metazoan DNA for protistan diversity
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1Taxonomic composition of microbial communities in coastal Arctic sediments
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1Marine sediment metagenome ICM_CFU
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6Marine sample from an Antarctic Bay Raw sequence reads
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2Arabian sea sediment samples with protist reads Metagenome
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34Temporal dynamics of eukaryotic microbial diversity at a coastal Pacific site
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18kNMNH Extant Specimen Records
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15Structuring effect of environmental variables on protistan diversity patterns in two anoxic marine basins
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123Extracellular DNA marine sediment Targeted Locus (Loci)
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23Sediment of acid mine drainage Targeted loci environmental
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755Artportalen (Swedish Species Observation System)
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1Microbial populations of Lascauxs Apse in relation to collembola and black stains on cave walls.
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1Duke University Herbarium Algae Collection
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56SAR amplicon from community incubated with various nanophytoplankton in microcosm
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43Little Sippewissett Marsh Targeted Locus (Loci)
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505Eukaryotic diversity in Central Park
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13Metagenome data from DNA stable isotope probing of Stiffkey saltmarsh sediment microcosms to investigate methanogenesis from choline
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64Pelagic Microbiome: viruses to protists. 16S and 18S data from oceanic samples collected at the chlorophyll maximum.
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3Active microbial eukaryotes amidst a marine subsurface RNA paleome
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34A Method for Studying Protistan Diversity Using Massively Parallel Sequencing of V9 Hypervariable Regions of Small-Subunit Ribosomal RNA Genes
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72Amundsen Gulf Overwintering Eukaryote Community
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17marine metagenome Raw sequence reads
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2There are 3 zooplankton samples from 3 different ponds, we collected sample and use the fresh samples to do DNA extraction directly, then mix them with adjustment guided by the number of species within each of them. At last, use Hiseq-2599 PE-150 to do NGS work
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3Sundarbans estuarine ecosystem Metagenome
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580Marine metagenomes from the bioGEOTRACES project
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13Magadalen Islands Spatio Temporal (MIST) Large Fraction
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72Microbial communities in the ocean Raw sequence reads
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35Community structure of Archaea in the western North Pacific and the Arctic Ocean
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2Microbiome profiling Schlöppnerbrunnen peat cores from different depths
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4Characteristics of eukaryotic plankton community in the Coastal Waters of Rongcheng by Illumina sequencing
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4Microbial eukaryote 454 Roche sequencing in estuarine ecosystems
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1Antarctic Hypersaline Brine Raw sequence reads
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1Uncultered bacterium Targeted Locus (Loci)
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632Benthos, zoo- and phytoplancton data collected during the monitoring cruise of RV "Vladimir Parshin" in 1996.
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4microbial community diversities of Tuosu Lake
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59Eucaryotic microbial communities structure in the headwater watchment of Dongjiang River in the south of China
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2marine metagenome Metagenome
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4Preservation of ancient eukaryotic DNA in methane hydrate-associated marine sediments.
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1marine plankton metagenome Raw sequence reads
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59Coral
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2kAmplicon sequencing of Tara Oceans DNA samples corresponding to size fractions for protists.
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1Leicestershire and Rutland Environmental Records Centre records pre 2000
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5816S rDNA amplicon of Bacteria and Archaea Metagenome
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3NMNH_material_samples
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18416S Amplicon Data from an Antarctic Cold Seep
-
3Comparison of marine sediments from the Beguela upwelling zone
-
173Temporal sampling of marine metagenomes from Station ALOHA and BATS
-
17Marine metagenome ICM_WBS
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33White sea picoplankton Metagenome
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1Comparative metagenome analysis of normal and arsenic contaminated soils from ballia district, Uttar Pradesh, India
-
1deep marine subsurface Raw sequence reads
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80Soil marker gene sequences across the Nutrient Network
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3A long-standing complex tropical dipole shapes marine microbial biogeography
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9Shotgun metagenomic analysis of Lake Paajarvi sediment microbes.
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12Marine sediment metagenome ICM_DSE
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11Metagenomic approach for studying picoeukaryotes in a extreme oligotrophic marginal sea (South Adriatic Sea) during winter mixed conditions
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131marine sediment metagenome Metagenome
-
4Microbial eukaryotes present in a Norwegian coastal ecosystem and in the gut content of Calanus copepods from Raunefjorden
-
8Microbial diversity in shallow water hydrothermal sediments of Gueishan Island, Taiwan
-
63Biological rejuvenation of iron oxides in bioturbated marine sediments
-
1Ascidian and Seawater Metagenome
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2marine sediment Raw sequence reads
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218S-V4 amplification of dinoflagellate cyst communities in the South China Sea
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40Amplicon sequencing of Tara Oceans RNA samples corresponding to size fractions for protists.
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2Arctic Ocean
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1Distributions and Abundances of Sublineages of the N2-Fixing Cyanobacterium Candidatus Atelocyanobacterium thalassa (UCYN-A) in the Noumea Lagoon
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6Microbial communities in estuarine sediments
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2Life in a toxic environment
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28uncultured marine picoeukaryote strain:Peuk_V4_NWP1 Raw sequence reads
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1kMICROBIS database
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6Microbial community structure of chronically polluted marine sediments from a cold region of the southern hemisphere
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1DOW-2
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1Metagenome microbial communities of bottom sediments of the Kara Sea
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1Ocean crust Targeted Locus (Loci)
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7sea water Picoeukaryotic Community Raw sequence reads Raw sequence reads
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12Green Edge microcosms Raw sequence reads
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36Microbial communities in the phycosphere environment
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2Marine subseafloor sediment Targeted Locus (Loci)
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14Seawater metagenome Targeted loci environmental
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2Cascading influence of inorganic nitrogen sources on DOM production composition lability and microbial community structure in the open ocean
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1Effects of triclosan on bacterial community composition in natural seawater microcosms
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6Indian_sediments
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14Municipal Pensacola Beach Sand Metagenome
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2Arctic sea-ice and sub-ice seawater raw sequence reads
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8kMarine metagenomes Metagenome
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1Microeukaryotes in metagenomic survey of ancient Siberian permafrost
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2NEW-1
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1soil bacteria and fungi Targeted loci environmental
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3Nuunat- ORMS formation during oil biodegradation at low temperature
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112Red Sea Zooplankton Raw sequence reads
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37KiEco Freshwater Ecology: River Macrophytes
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5Pelagic sediment metagenome of Gulf of Kutch
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164Red Sea microbial plankton Raw sequence reads
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2DSW-2
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3De novo whole metagenome sequencing studies
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1Metagenomics of Ojo de Campo
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270Development and validation of a multi-trophic metabarcoding biotic index for benthic organic enrichment biomonitoring using a salmon farm case-study.
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1Thermophilic endospores in temperate sediments
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8seawater metagenome Metagenome
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3Plankton sample collected from Nanaimo Harbour Targeted Locus (Loci)
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58Nitrate-storing microorganisms in sediments of the Bornholm Basin
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5Pelagic sediment metagenome of Gulf of Khambhat
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2Marine sediment Raw sequence reads
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18Heterogeneity of methane seep microbiomes in the NE Pacific
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10Diversity of SE Pacific benthic Bacteria and Archaea communities Targeted Locus (Loci)
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44Marine sediment metagenome raw sequence reads
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2SCHEMA_Sediment
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1Marine sediment metagenome
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1kPhytoplankton from the White Sea, Barents Sea, Norwegian Sea and Arctic Basin 1993-2003
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29Marine metagenome ICM_GPS
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241Sediment Metagenome Raw sequence reads
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12Metagenomic investigation of six depths from the anchialine Bundera sinkhole
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3Diversity and population structure of Marine Group A in the oxygen minimum zone of the Northeast subarctic Pacific Ocean
-
2USS-2
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56“Phytoplankton and Zooplankton data collected during the Black Sea cruises of UkrSCES R/V "Ernst Krenkel" in 1992”
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2NEW-2
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4Peruvian eddy shotgun metagenomes
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53Successional trajectories of coastal bacterioplankton communities in response to co-exposure of cadmium and phenanthrene
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32Sea ice and seawater Raw sequence reads
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2Microbial eukaryote community structure during early phytoplankton blooms in the naturally iron-fertilized Kerguelen area (Southern Ocean) Targeted Locus (Loci)