Bacterial 16s Amplicon Sequencing of the Atlantic Ocean

doi:10.15468/oqc3n8

Bacterial 16s Amplicon Sequencing of the Atlantic Ocean

Citation

MGnify (2016). Bacterial 16s Amplicon Sequencing of the Atlantic Ocean. Sampling event dataset https://doi.org/10.15468/oqc3n8 accessed via GBIF.org on 2020-07-13.

Description

Latitudinal transect of the Atlantic Ocean, depth range from 20-200m, size fractioned by filtering (0.22, 3, 8 µm). Amplicon Sequencing of the V5-V6 region of the bacterial 16s rRNA Gene.

Sampling Description

Sampling

Latitudinal transect of the Atlantic Ocean, depth range from 20-200m, size fractioned by filtering (0.22, 3, 8 µm). Amplicon Sequencing of the V5-V6 region of the bacterial 16s rRNA Gene.

Method steps

Pipeline used: https://www.ebi.ac.uk/metagenomics/pipelines/4.1

Taxonomic Coverages

Geographic Coverages

Bibliographic Citations

Milici M, Deng ZL, Tomasch J, Decelle J, Wos-Oxley ML, Wang H, Jáuregui R, Plumeier I, Giebel HA, Badewien TH, Wurst M, Pieper DH, Simon M, Wagner-Döbler I. 2016. Co-occurrence Analysis of Microbial Taxa in the Atlantic Ocean Reveals High Connectivity in the Free-Living Bacterioplankton. Front Microbiol vol. 7 - DOI:10.3389/fmicb.2016.00649
Milici M, Tomasch J, Wos-Oxley ML, Decelle J, Jáuregui R, Wang H, Deng ZL, Plumeier I, Giebel HA, Badewien TH, Wurst M, Pieper DH, Simon M, Wagner-Döbler I. 2016. Bacterioplankton Biogeography of the Atlantic Ocean: A Case Study of the Distance-Decay Relationship. Front Microbiol vol. 7 - DOI:10.3389/fmicb.2016.00590
Milici M, Tomasch J, Wos-Oxley ML, Wang H, Jáuregui R, Camarinha-Silva A, Deng ZL, Plumeier I, Giebel HA, Wurst M, Pieper DH, Simon M, Wagner-Döbler I. 2016. Low diversity of planktonic bacteria in the tropical ocean. Sci Rep vol. 6 - DOI:10.1038/srep19054

Contacts

originator
HELMHOLTZ CENTRE FOR INFECTION RESEARCH

metadata author
HELMHOLTZ CENTRE FOR INFECTION RESEARCH

administrative point of contact
HELMHOLTZ CENTRE FOR INFECTION RESEARCH