Temporal dynamics of the particle-attached and free-living microbial communities from coastal seawater

doi:10.15468/6iksmx

Temporal dynamics of the particle-attached and free-living microbial communities from coastal seawater

Citation

MGnify (2019). Temporal dynamics of the particle-attached and free-living microbial communities from coastal seawater. Sampling event dataset https://doi.org/10.15468/6iksmx accessed via GBIF.org on 2024-12-15.

Description

We examined the particle-attached and free-living microbial communities from coastal seawater at the Pivers Island Coastal Observatory (PICO) monthly from July 2013-August 2014. Partial 16S rRNA gene libraries were used to identify bacteria found in four size fractions of seawater >63m (zooplankton and large particles), 63-5m (particles), 5-1m (small particles/ dividing cells) and <1m (free-living bacteria).

Sampling Description

Sampling

We examined the particle-attached and free-living microbial communities from coastal seawater at the Pivers Island Coastal Observatory (PICO) monthly from July 2013-August 2014. Partial 16S rRNA gene libraries were used to identify bacteria found in four size fractions of seawater >63m (zooplankton and large particles), 63-5m (particles), 5-1m (small particles/ dividing cells) and <1m (free-living bacteria).

Method steps

Pipeline used: https://www.ebi.ac.uk/metagenomics/pipelines/4.1

Taxonomic Coverages

Geographic Coverages

Bibliographic Citations

Yung CM, Ward CS, Davis KM, Johnson ZI, Hunt DE. 2016. Insensitivity of Diverse and Temporally Variable Particle-Associated Microbial Communities to Bulk Seawater Environmental Parameters. Appl Environ Microbiol vol. 82 - DOI:10.1128/aem.00395-16

Contacts

originator
Duke University Marine Lab

metadata author
Duke University Marine Lab

administrative point of contact
Duke University Marine Lab