ocean bacteria Metagenomic assembly
Citation
MGnify (2019). ocean bacteria Metagenomic assembly. Sampling event dataset https://doi.org/10.15468/ibcrn3 accessed via GBIF.org on 2023-09-24.Description
Bacterial DNA was isolated from two water samples: 1 location in the Bering Strait from the chlorophyll max layer (7m depth) and 1 location in the Chukchi Sea from bottom water (55m depth). The samples were collected with the purpose of sequencing the metagenome to serve as a protein identification database for a metaproteomics study.Sampling Description
Sampling
Bacterial DNA was isolated from two water samples: 1 location in the Bering Strait from the chlorophyll max layer (7m depth) and 1 location in the Chukchi Sea from bottom water (55m depth). The samples were collected with the purpose of sequencing the metagenome to serve as a protein identification database for a metaproteomics study.Method steps
- Pipeline used: https://www.ebi.ac.uk/metagenomics/pipelines/4.1
Taxonomic Coverages
Geographic Coverages
Bibliographic Citations
- Mikan MP, Harvey HR, Timmins-Schiffman E, Riffle M, May DH, Salter I, Noble WS, Nunn BL. 2020. Metaproteomics reveal that rapid perturbations in organic matter prioritize functional restructuring over taxonomy in western Arctic Ocean microbiomes. ISME J vol. 14 - DOI:10.1038/s41396-019-0503-z
Contacts
originatorUniversity of Washington
metadata author
University of Washington
administrative point of contact
University of Washington