SAR amplicon from community incubated with various nanophytoplankton in microcosm
Citation
MGnify (2018). SAR amplicon from community incubated with various nanophytoplankton in microcosm. Sampling event dataset https://doi.org/10.15468/5tuxth accessed via GBIF.org on 2019-11-20.Description
To address the impact of prey (bottom-up) on protist communities, we combine insights from two methods – DGGE to assess abundant ciliates, and HTS sequencing of SAR (Stramenopila, Alveolata, Rhizaria) communities – in marine microcosms. Here are the resulting read generated for this project with our SAR primers.Sampling Description
Sampling
To address the impact of prey (bottom-up) on protist communities, we combine insights from two methods – DGGE to assess abundant ciliates, and HTS sequencing of SAR (Stramenopila, Alveolata, Rhizaria) communities – in marine microcosms. Here are the resulting read generated for this project with our SAR primers.Method steps
- Pipeline used: https://www.ebi.ac.uk/metagenomics/pipelines/4.1
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