SAR amplicon from community incubated with various nanophytoplankton in microcosm

doi:10.15468/5tuxth

SAR amplicon from community incubated with various nanophytoplankton in microcosm

Citation

MGnify (2019). SAR amplicon from community incubated with various nanophytoplankton in microcosm. Sampling event dataset https://doi.org/10.15468/5tuxth accessed via GBIF.org on 2023-12-04.

Description

To address the impact of prey (bottom-up) on protist communities, we combine insights from two methods DGGE to assess abundant ciliates, and HTS sequencing of SAR (Stramenopila, Alveolata, Rhizaria) communities in marine microcosms. Here are the resulting read generated for this project with our SAR primers.

Sampling Description

Sampling

To address the impact of prey (bottom-up) on protist communities, we combine insights from two methods DGGE to assess abundant ciliates, and HTS sequencing of SAR (Stramenopila, Alveolata, Rhizaria) communities in marine microcosms. Here are the resulting read generated for this project with our SAR primers.

Method steps

Pipeline used: https://www.ebi.ac.uk/metagenomics/pipelines/4.1

Taxonomic Coverages

Geographic Coverages

Bibliographic Citations

Grattepanche JD, Juarez DL, Wood CC, McManus GB, Katz LA. 2019. Incubation and grazing effects on spirotrich ciliate diversity inferred from molecular analyses of microcosm experiments. PLoS One vol. 14 - DOI:10.1371/journal.pone.0215872

Contacts

originator
Smith College

metadata author
Smith College

administrative point of contact
Smith College