marine metagenome Targeted Locus (Loci)

doi:10.15468/fiw0w3

marine metagenome Targeted Locus (Loci)

Citation

MGnify (2019). marine metagenome Targeted Locus (Loci). Sampling event dataset https://doi.org/10.15468/fiw0w3 accessed via GBIF.org on 2025-05-17.

Description

The goal of this project is to examine and integrate taxonomic, genetic, and functional diversity in marine lakes in Palau and Indonesia. Samples have been collected at multiple depths in multiple lakes since 2010. DNA was extracted from filtered water samples, and archaeal/bacterial 16S rRNA genes were amplified and then sequenced (using 454 in 2010 and Illumina thereafter).

Sampling Description

Sampling

The goal of this project is to examine and integrate taxonomic, genetic, and functional diversity in marine lakes in Palau and Indonesia. Samples have been collected at multiple depths in multiple lakes since 2010. DNA was extracted from filtered water samples, and archaeal/bacterial 16S rRNA genes were amplified and then sequenced (using 454 in 2010 and Illumina thereafter).

Method steps

Pipeline used: https://www.ebi.ac.uk/metagenomics/pipelines/4.1

Taxonomic Coverages

Geographic Coverages

Bibliographic Citations

Contacts

originator
University of California, Merced

metadata author
University of California, Merced

administrative point of contact
University of California, Merced