Geotraces Raw sequence reads

doi:10.15468/8ncxpr

Geotraces Raw sequence reads

Citation

MGnify (2020). Geotraces Raw sequence reads. Sampling event dataset https://doi.org/10.15468/8ncxpr accessed via GBIF.org on 2025-04-30.

Description

This study is aimed to explore the microbial lifestyle in ocean and interpret metabolic potentials using metagenome/metaproteome dataset. Furthermore, it is important to learn about various mode of energy consumption that may support marine microbes i.e. photoautotrophy, chemoautotrophy and heterotrophy.

Sampling Description

Sampling

This study is aimed to explore the microbial lifestyle in ocean and interpret metabolic potentials using metagenome/metaproteome dataset. Furthermore, it is important to learn about various mode of energy consumption that may support marine microbes i.e. photoautotrophy, chemoautotrophy and heterotrophy.

Method steps

Pipeline used: https://www.ebi.ac.uk/metagenomics/pipelines/4.1

Taxonomic Coverages

Geographic Coverages

Bibliographic Citations

Bergauer K, Fernandez-Guerra A, Garcia JAL, Sprenger RR, Stepanauskas R, Pachiadaki MG, Jensen ON, Herndl GJ. 2018. Organic matter processing by microbial communities throughout the Atlantic water column as revealed by metaproteomics. Proc Natl Acad Sci U S A vol. 115 - DOI:10.1073/pnas.1708779115

Contacts

originator
University of Vienna

metadata author
University of Vienna

administrative point of contact
University of Vienna