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Marine metagenomes Metagenome

Dataset homepage

Citation

MGnify (2019). Marine metagenomes Metagenome. Sampling event dataset https://doi.org/10.15468/1ntxtc accessed via GBIF.org on 2023-01-26.

Description

Marine amplicons from Australian marine (benthic and pelagic environments

Sampling Description

Sampling

Marine amplicons from Australian marine (benthic and pelagic environments

Method steps

  1. Pipeline used: https://www.ebi.ac.uk/metagenomics/pipelines/4.1

Taxonomic Coverages

Geographic Coverages

Bibliographic Citations

  1. Sow SLS, Trull TW, Bodrossy L. 2020. Oceanographic Fronts Shape Assemblages: A High-Resolution 18S rRNA Gene Survey From the Ice-Edge to the Equator of the South Pacific. Front Microbiol vol. 11 - DOI:10.3389/fmicb.2020.01847
  2. Vendl C, Slavich E, Wemheuer B, Nelson T, Ferrari B, Thomas T, Rogers T. 2020. Respiratory microbiota of humpback whales may be reduced in diversity and richness the longer they fast. Sci Rep vol. 10 - DOI:10.1038/s41598-020-69602-x
  3. Focardi A, Ostrowski M, Goossen K, Brown MV, Paulsen I. 2020. Investigating the Diversity of Marine Bacteriophage in Contrasting Water Masses Associated with the East Australian Current (EAC) System. Viruses vol. 12 - DOI:10.3390/v12030317
  4. Raes EJ, Bodrossy L, van de Kamp J, Bissett A, Ostrowski M, Brown MV, Sow SLS, Sloyan B, Waite AM. 2018. Oceanographic boundaries constrain microbial diversity gradients in the South Pacific Ocean. Proc Natl Acad Sci U S A vol. 115 - DOI:10.1073/pnas.1719335115
  5. Brown MV, van de Kamp J, Ostrowski M, Seymour JR, Ingleton T, Messer LF, Jeffries T, Siboni N, Laverock B, Bibiloni-Isaksson J, Nelson TM, Coman F, Davies CH, Frampton D, Rayner M, Goossen K, Robert S, Holmes B, Abell GCJ, Craw P, Kahlke T, Sow SLS, McAllister K, Windsor J, Skuza M, Crossing R, Patten N, Malthouse P, van Ruth PD, Paulsen I, Fuhrman JA, Richardson A, Koval J, Bissett A, Fitzgerald A, Moltmann T, Bodrossy L. 2018. Systematic, continental scale temporal monitoring of marine pelagic microbiota by the Australian Marine Microbial Biodiversity Initiative. Sci Data vol. 5 - DOI:10.1038/sdata.2018.130

Contacts

originator
CSIRO
metadata author
CSIRO
administrative point of contact
CSIRO
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