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marine sediment metagenome Targeted Locus (Loci)

Dataset homepage

Citation

MGnify (2019). marine sediment metagenome Targeted Locus (Loci). Sampling event dataset https://doi.org/10.15468/riem4d accessed via GBIF.org on 2023-02-03.

Description

Cores were collected over a year long period from sites associated with three transects in the northern Gulf of Mexico. Surface sediments were analyzed to determine patterns in Bacteria and Archaea within these samples and comparisons made to patterns observed for microeukaryotes. The study aimed to determine how location, season and sediment characteristics influence diversity and community structure. Similarities or differences in patterns among the three domains were identified.

Sampling Description

Sampling

Cores were collected over a year long period from sites associated with three transects in the northern Gulf of Mexico. Surface sediments were analyzed to determine patterns in Bacteria and Archaea within these samples and comparisons made to patterns observed for microeukaryotes. The study aimed to determine how location, season and sediment characteristics influence diversity and community structure. Similarities or differences in patterns among the three domains were identified.

Method steps

  1. Pipeline used: https://www.ebi.ac.uk/metagenomics/pipelines/4.1

Taxonomic Coverages

Geographic Coverages

Bibliographic Citations

Contacts

originator
Dauphin Island Sea Lab
metadata author
Dauphin Island Sea Lab
administrative point of contact
Dauphin Island Sea Lab
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