Amplicon sequencing of Tara Oceans DNA samples corresponding to size fractions for protists.
Citation
MGnify (2022). Amplicon sequencing of Tara Oceans DNA samples corresponding to size fractions for protists.. Sampling event dataset https://doi.org/10.15468/2hv1be accessed via GBIF.org on 2024-12-14.Description
Analysis of 18S DNA in Tara Oceans Protists size fractions through amplicon sequencing: Seawater was filtered from different depths to retain small and large cell sizes. The DNA was extracted and amplified by PCR.Sampling Description
Sampling
Analysis of 18S DNA in Tara Oceans Protists size fractions through amplicon sequencing: Seawater was filtered from different depths to retain small and large cell sizes. The DNA was extracted and amplified by PCR.Method steps
- Pipeline used: https://www.ebi.ac.uk/metagenomics/pipelines/4.1
Taxonomic Coverages
Geographic Coverages
Bibliographic Citations
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- Faure E, Not F, Benoiston AS, Labadie K, Bittner L, Ayata SD. 2019. Mixotrophic protists display contrasted biogeographies in the global ocean. ISME J vol. 13 - DOI:10.1038/s41396-018-0340-5
- Vincent FJ, Colin S, Romac S, Scalco E, Bittner L, Garcia Y, Lopes RM, Dolan JR, Zingone A, de Vargas C, Bowler C. 2018. The epibiotic life of the cosmopolitan diatom Fragilariopsis doliolus on heterotrophic ciliates in the open ocean. ISME J vol. 12 - DOI:10.1038/s41396-017-0029-1
- Biard T, Bigeard E, Audic S, Poulain J, Gutierrez-Rodriguez A, Pesant S, Stemmann L, Not F. 2017. Biogeography and diversity of Collodaria (Radiolaria) in the global ocean. ISME J vol. 11 - DOI:10.1038/ismej.2017.12
- Guidi L, Chaffron S, Bittner L, Eveillard D, Larhlimi A, Roux S, Darzi Y, Audic S, Berline L, Brum J, Coelho LP, Espinoza JCI, Malviya S, Sunagawa S, Dimier C, Kandels-Lewis S, Picheral M, Poulain J, Searson S, Tara Oceans coordinators, Stemmann L, Not F, Hingamp P, Speich S, Follows M, Karp-Boss L, Boss E, Ogata H, Pesant S, Weissenbach J, Wincker P, Acinas SG, Bork P, de Vargas C, Iudicone D, Sullivan MB, Raes J, Karsenti E, Bowler C, Gorsky G. 2016. Plankton networks driving carbon export in the oligotrophic ocean. Nature vol. 532 - DOI:10.1038/nature16942
Contacts
originatorThe French National Sequencing Center (Genoscope)
Le Ponant Building D - 25 rue Leblanc
PARIS - RCS B 775 685 019
75015
FR
Telephone: +33 (0) 1 64 50 20 59
metadata author
The French National Sequencing Center (Genoscope)
Le Ponant Building D - 25 rue Leblanc
PARIS - RCS B 775 685 019
75015
FR
Telephone: +33 (0) 1 64 50 20 59
administrative point of contact
The French National Sequencing Center (Genoscope)
Le Ponant Building D - 25 rue Leblanc
PARIS - RCS B 775 685 019
75015
FR
Telephone: +33 (0) 1 64 50 20 59