Pelagic Microbiome: viruses to protists. 16S and 18S data from oceanic samples collected at the chlorophyll maximum.
Citation
MGnify (2018). Pelagic Microbiome: viruses to protists. 16S and 18S data from oceanic samples collected at the chlorophyll maximum… Sampling event dataset https://doi.org/10.15468/p3yycd accessed via GBIF.org on 2020-01-24.Description
We collected environmental samples during the second cruise of the project “The Great Southern Coccolithophore Belt” collecting samples in the South Indian Ocean and Southern Ocean; during the RSS James Clark Ross Cruise JCR271 as part of the project on Arctic Ocean Acidification collecting samples in the Arctic; finally we collected two costal samples off the coast of South Africa during algal bloom events. Samples included 16S, 18S amplicons and metagenomic data.Sampling Description
Sampling
We collected environmental samples during the second cruise of the project “The Great Southern Coccolithophore Belt” collecting samples in the South Indian Ocean and Southern Ocean; during the RSS James Clark Ross Cruise JCR271 as part of the project on Arctic Ocean Acidification collecting samples in the Arctic; finally we collected two costal samples off the coast of South Africa during algal bloom events. Samples included 16S, 18S amplicons and metagenomic data.Method steps
- Pipeline used: https://www.ebi.ac.uk/metagenomics/pipelines/4.1
Taxonomic Coverages
Geographic Coverages
Bibliographic Citations
- Flaviani F, Schroeder DC, Lebret K, Balestreri C, Highfield AC, Schroeder JL, Thorpe SE, Moore K, Pasckiewicz K, Pfaff MC, Rybicki EP. 2018. Distinct Oceanic Microbiomes From Viruses to Protists Located Near the Antarctic Circumpolar Current. Front Microbiol vol. 9 - DOI:10.3389/fmicb.2018.01474
- Flaviani F, Schroeder DC, Balestreri C, Schroeder JL, Moore K, Paszkiewicz K, Pfaff MC, Rybicki EP. 2017. A Pelagic Microbiome (Viruses to Protists) from a Small Cup of Seawater. Viruses vol. 9 - DOI:10.3390/v9030047
Contacts
originatorTHE MARINE BIOLOGICAL ASSOCIATION
metadata author
THE MARINE BIOLOGICAL ASSOCIATION
administrative point of contact
THE MARINE BIOLOGICAL ASSOCIATION