Eukaryote diversity assessment of sediments of the Western English Channel
Citation
MGnify (2019). Eukaryote diversity assessment of sediments of the Western English Channel. Sampling event dataset https://doi.org/10.15468/iqze68 accessed via GBIF.org on 2021-01-22.Description
Sediments were collected at monthly intervals from the Western English Channel (site L4) and environmental DNA extracted. The effect of season on the community composition and diversity of eukaryotes was assessed using in depth sequencing of 18S rRNA genes. This data will be compared with traditional techniques used to identify benthic species to assess the efficacy of eDNA biomonitoring as a tool for measuring biodiversity.Sampling Description
Sampling
Sediments were collected at monthly intervals from the Western English Channel (site L4) and environmental DNA extracted. The effect of season on the community composition and diversity of eukaryotes was assessed using in depth sequencing of 18S rRNA genes. This data will be compared with traditional techniques used to identify benthic species to assess the efficacy of eDNA biomonitoring as a tool for measuring biodiversity.Method steps
- Pipeline used: https://www.ebi.ac.uk/metagenomics/pipelines/4.1
Taxonomic Coverages
Geographic Coverages
Bibliographic Citations
Contacts
originatorPlymouth Martine Laboratory
metadata author
Plymouth Martine Laboratory
administrative point of contact
Plymouth Martine Laboratory