Municipal Pensacola Beach Sand Metagenome

doi:10.15468/dvxd2d

Municipal Pensacola Beach Sand Metagenome

Citation

MGnify (2019). Municipal Pensacola Beach Sand Metagenome. Sampling event dataset https://doi.org/10.15468/dvxd2d accessed via GBIF.org on 2024-12-13.

Description

This study investigated the successional patterns of functional and taxonomic diversity for over one year after the Deepwater Horizon oil was deposited on Pensacola Beach sands (FL, USA), using metagenomic and 16S rRNA gene amplicon techniques.

Sampling Description

Sampling

This study investigated the successional patterns of functional and taxonomic diversity for over one year after the Deepwater Horizon oil was deposited on Pensacola Beach sands (FL, USA), using metagenomic and 16S rRNA gene amplicon techniques.

Method steps

Pipeline used: https://www.ebi.ac.uk/metagenomics/pipelines/4.1

Taxonomic Coverages

Geographic Coverages

Bibliographic Citations

Zhu C, Miller M, Marpaka S, Vaysberg P, Rühlemann MC, Wu G, Heinsen FA, Tempel M, Zhao L, Lieb W, Franke A, Bromberg Y. 2018. Functional sequencing read annotation for high precision microbiome analysis. Nucleic Acids Res vol. 46 - DOI:10.1093/nar/gkx1209
Miller M, Zhu C, Bromberg Y. 2017. clubber: removing the bioinformatics bottleneck in big data analyses. J Integr Bioinform vol. 14 - DOI:10.1515/jib-2017-0020
Eren AM, Esen ÖC, Quince C, Vineis JH, Morrison HG, Sogin ML, Delmont TO. 2015. Anvi'o: an advanced analysis and visualization platform for 'omics data. PeerJ vol. 3 - DOI:10.7717/peerj.1319
Rodriguez-R LM, Overholt WA, Hagan C, Huettel M, Kostka JE, Konstantinidis KT. 2015. Microbial community successional patterns in beach sands impacted by the Deepwater Horizon oil spill. ISME J vol. 9 - DOI:10.1038/ismej.2015.5

Contacts

originator
Georgia Institute of Technology

metadata author
Georgia Institute of Technology

administrative point of contact
Georgia Institute of Technology