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Download as TSV
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821Baselines Initiative 16S rRNA gene dataset: Baselines Amplicon Release 1 (R1) Indian Ocean 2015
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336Mesocosm Targeted Locus (Loci)
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1kComparative 16S analysis of hydrothermal vent samples from the Mid-Atlantic Ridge (MAR)
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788Arctic first-year drift ice and under-ice water bacterial communities
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835Northern Gulf of Mexico Hypoxic Zone Raw sequence reads
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5kBiological Impacts of Ocean Acidification
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20Whale fall
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117Microbial diversity of marine sediments from Ross Sea
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2016S and 18S sequences from the epiphytic biofilm on leaves of Enhalus acroides
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1kSeasonal and spatial diversity of bacterial communities in marine sediments of Ningbo Xiangshan Coastal Ocean
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65Microbial diversity associated with copepods in the North Atlantic subtropical gyre
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207Bacterial diversity in the South Adriatic Sea during winter of 2016
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657marine sediment metagenome Raw sequence reads
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5Archaea diversity in marine sediment
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1kPolymetallic nodule field Targeted loci environmental
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1kPo river Prodelta and Mar Piccolo of Taranto surface sediments bacterial communities targeted loci
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1keDNA_Subseafloor
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718Abyssal Baseline Study & Geophysical Survey (ABYSSLINE 02)_AB01_Re-sequenced Targeted loci environmental
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185Marine methane seep Targeted Locus (Loci)
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190marine sediment metagenome Metagenome
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1Anammox bacteria in surface sediments of South China Sea
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35916S rRNA metagenomic investigation of arsenotrophic bacteriome of ground water and soil from arsenic-prone area of Bangladesh
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95Microcosms Metagenome
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18kEffects of organic matter manipulation on archaeal, bacterial, and fungal community assembly
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1kThis workpackage details only the prokaryote (Archaea and Bacteria) analyses for the MicroPolar project.
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215Microbial communities associated with ferromanganese nodules and the surrounding sediments
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4Seawater Metagenome
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69Marine Metagenome
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1kphotoautotrophic_biofilm
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1kSea water sample Targeted Locus (Loci)
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3kBacterial 16S rRNA gene sequencing of Antarctic soil
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169Atlantic salmon microbiota
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47Water and Sediment samples Targeted loci environmental
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143Microbial indicators of anthropogenic marine pollution identified by 16S and 18S metagenomic library analysis
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1kMicrobial diversity in the Tongyeong-Geoje coastal area of Korea
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8kIt was verified the impact of irrigation treatments (wet, optimal, dry and very dry) and three potato cultivars on soil microbial community.
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49Habitat and host related variation in sponge bacterial communities in Indonesian coral reefs and marine lakes
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521Microbial community structure and dynamics in the oxygen minimum zone of the Northeast subarctic Pacific Ocean
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16016S rRNA metagenomic investigation of arsenotrophic bacteriome of ground water and soil from arsenic-prone area of Bangladesh
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90Microbial Diversity in Antarctic marine sediments (Admiralty Bay and Bransfield Strait)
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24Microbial induced mineral precipitations caused by nitrate treatment for souring control during microbial enhanced oil recovery (MEOR)
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292Trichodesmium spiralis associated microbiome Targeted loci
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2kNorth Pacific Subtropical Gyre Microbial Community
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281Seawater Targeted Locus (Loci)
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5kMacroalgal Morphology affects composition and settlement of microbial communities
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810Microbial diversity in the Tongyeong-Geoje coastal area of Korea
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16Marine Water Column Samples Targeted loci environmental
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667Microbial associations in temperate marine copepods from the Gulf of Maine
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920Bacterial communities from the water column and the surface sediments along a transect in the East Sea (Sea of Japan)
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106AllDist Targeted Locus (Loci)
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1kMarine metagenome Targeted loci environmental
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700Prokaryotic community response to microalgal lysates
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2kBaltic Sea high-frequency temporal study 2012 at the Linnaeus Microbial Observatory Targeted Locus (Loci)
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705Effect of size fractionation and DNA extraction on the diversity and composition of prokaryotic and eukaryotic plankton community
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752resuscitation mechanisms during enrichment culture
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164Diet analysis of Japanese sardine and Pacific round herring larvae
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349Marine bacteria Targeted Locus (Loci)
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1uncultured marine eukaryote Targeted loci environmental
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4kBacterial Diversity in the East China Sea
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1kLimited influence of primary treated sewage waters on bacterial abundance, production and community composition in coastal seawaters
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99marine sediment metagenome Raw sequence reads
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428Species-specific associations between bacterioplankton and photosynthetic picoeukaryotes
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3kImpact of a major inflow event on the composition and distribution of bacterioplankton communities in the Baltic Sea
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1kMicrobial community in marine sediments
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1kOceanic microplankton do not adhere to the latitudinal diversity gradient
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372Spirulina necromass degradartion in arctic marine sediments
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351Antarctic Snow Algae 2014/15 16S and 18S Illumina Seq of snow algae communities around Ryder Bay, Antarctica
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469Equatorial Pacific Ocean Targeted loci environmental
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68suspended particulate matter Raw sequence reads
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2CARBOM cruise 2013 flow cytometry sorted phytoplankton
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3kBacteria exposure experiment North Sea
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1kMicrobial Processes and Biodiversity: OCEAN
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8kEMOSE (2017) Inter-Comparison of Marine Plankton Metagenome Analysis Methods
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115marine sediment metagenome Raw sequence reads
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175Diversity and composition of sediment microbial assemblages in an Atlantic port environment
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564Groundwater microbiome
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967the assembly of abundant and rare bacterioplankton subcommunities in three subtropical bays
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39Extracellular DNA marine sediment Targeted Locus (Loci)
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1kReciprocal transplantation experiment of salt marsh sediments Targeted loci
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390MiSeq 16S rRNA gene (prokaryotic 16S rRNA gene) sequences of 16 SCS sediments
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629IMPACT OF SAHARAN DUST DEPOSITION ON BACTERIOPLANKTON IN MARINE SURFACE WATER
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324CCA_pathobiome
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26SAR amplicon from community incubated with various nanophytoplankton in microcosm
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1kLittle Sippewissett Marsh Targeted Locus (Loci)
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224Ocean sediment-basement interface Targeted Locus (Loci)
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115Aarhus Bay sediment PCR amplified product sequencing
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2223Soil16S
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288Standard filtration practices significantly distort planktonic microbial diversity estimates
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1kMarine sediment Raw sequence reads
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197Soil DNA extracted from Robinson Ridge, East Antarctica Raw sequence reads
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2kBacterial diversity in snow from mid-latitude mountain areas: Alps, Eastern Anatolia, Karakoram and Himalaya.
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1Mount Hope Bay bacteria Targeted Locus (Loci)
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3kMicrobial diversity in the Benguela coastal upwelling system as derived from 16S rRNA sequencing and RNA Stable Isotope Probing (SIP)
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1kA practical introduction to microbial molecular ecology through the use of iChips
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5kBacterias y Arqueas de la transición Andino-Amazónica del departamento del Caquetá - Proyecto Colombia BIO
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2kMariana and Kermadec Trench sediment 16S rRNA gene sequencing
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526Bacterial communitiy compositions on natural and artificial substrates in the Spermonde Archipelago, Indonesia
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1kADDOMEx
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1kMicrobial diversity in the Tongyeong-Geoje coastal area of Korea2
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591Marine bacteria metagenome
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395Submarine Ligurian Canyons Water Prokaryotic and Protist Communities
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69Seawater bacteria Metagenome
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319Coral or reef-seawater associated bacteria Targeted Locus (Loci)
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1kMediterranean Contaminated Pelagic communities
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2kADDOMEx Tier 3 Experiments: Mesocosm Si with Gulf of Mexico coastal waters
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56416S rRNA amplicon from marine Bacteria Raw sequence reads
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5kDiversity of microbial community (bacteria, micro-eukaryotes and fungi) in the Passage of Lascaux Cave.
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1kMarine Sediment from the Berkeley Bay Targeted Locus (Loci)
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100Hydrate Ridge, OR - Deep sea cold seep ecosystem Targeted Locus (Loci)
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59envinronment Metagenome
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18marine Archaea metagenome
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602Pelagic Gulf of Mexico Targeted loci environmental
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196Shotgun Metagenomic Sequencing of the Arctic Ocean during Winter-Spring Transition
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172VAG Mine Pit Pond Metagenome
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479Gulf of Mexico open ocean Targeted Locus (Loci)
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1k16S amplicons Subtropical Frontal Zone New Zealand
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303Comparison of copper contaminated soils, with similar uncontaminated controls.
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280Sea water microorganisms Raw sequence reads
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1kTaxonomic study of endospores in a marine sediment
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58716S data describing Antarctic benthic sediment
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8California Current Cruise CCE-P1408 Process Cruise #6
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26Northern Gulf of Mexico Hypoxia can Alter Sediment Communities of Nitrifying Archaea
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76Distribution and composition of thiotrophic mats in the hypoxic zone of the Black Sea (150-170m water depth, Crimea margin)
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30ocean bacteria Metagenomic assembly
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924Diversity of bacterioneuston and bacterioplankton in coastal waters of Misaki, Japan
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1kNutrient addition mesocosm experiment Targeted Locus (Loci)
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107Eukaryotic natural population from Northern Baffin Bay - Raw sequence reads
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2kMarine methane seep Targeted Locus (Loci)
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13815N methylamine SIP (WCO station L4)
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6kZostera Marina Ammonification environmental
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1Blue Mountains Swamp Archaea
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337Biogeography of pelagic bacterioplankton across an antagonistic temperature-salinity gradient in the Red Sea
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10kBacterial 16s Amplicon Sequencing of the Atlantic Ocean
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656Geographically tagged INSDC sequences
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69Dissolved compounds excreted by copepods reshape the diversity and the activity of marine bacterioplankton community
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2Marine metagenome ICM_AWP
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10Microbial eukaryotes
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1kTemporal dynamics of the particle-attached and free-living microbial communities from coastal seawater
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536Microbial communities in marine surface water
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2Marine sediment metagenome ICM_FIS
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256Gulf Oil Spill underwater oil plume samples Targeted Locus (Loci)
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2kAbundance, diversity and distribution of Legionellales in wet environments in Sweden
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41Diet analysis of Pacific Bluefin Tuna larvae
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2kSea spray aerosols at Three California Beaches
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54Diesel contamination of Antarctic soils and sediments
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279Southern Ocean microorganisms Targeted Locus (Loci)
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3Marine sediment metagenome ICM_NZS
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71Ocean Acidification baceria sample Targeted loci environmental
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52Southern Ocean
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8Metabolically active microbial communities in marine sediment under high-CO2 and low-pH extremes
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30Global Ocean Sampling Expedition
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2kEffect of genetics and environment on gut bacteria in Anopheles and Aedes mosquitoes.
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80Ocean Water Metagenome
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116Bacterial communities in sandy sediment at submarine volcanic vents off Panarea Island (Italy)
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540E1 Targeted Locus (Loci)
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4kMicrobial biogeography of French caves
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1kCaspian Sea Sediment - 16S Survey Targeted Locus (Loci)
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7kDEEPEND: Microbiome and bacterioplankton rRNA gene sequence data collected from Gulf of Mexico seawater samples. Cruises DP03 and DP04 from Jan 2016 - December 2016
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1kShort-term interaction of pyrene and cadmium in prokaryotic community in coastal sediment microcosms
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131Bacterial community dynamics during polysaccharide degradation at contrasting sites in the Southern and Atlantic Oceans
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36kNahant Collection
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1kUS East Coast Salt Marshes Targeted Locus (Loci)
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1kaquatic bacterial metagenome Raw sequence reads
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56rDNA amplicon sequencing of Western North Atlantic microbial community
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1kVariations in prokaryotic community assembly and predicted metabolic potential of surface sediments with geography in the coastal northern Zhejiang, East China Sea
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52Zooplankton communities in the coastal water of northeastern Hokkaido
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26Metagenetic analysis of the 18S nuclear small subunit ribosomal RNA gene of a mixed zooplankton assemblage was carried out using the 454 pyrosequencing platform.
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116CTD water column metabarcoding
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1kmarine sediment metagenome Raw sequence reads
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437Intertidal Mixing Zone Targeted Locus (Loci)
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58Metagenomic sequence from soil bacteria
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2kEffects of Fecal Input, Environmental Conditions, and Environmental Sources on Enterococci Concentrations in an Estuarine Ecosystem
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247Deep mud-volcano biosphere in the Nankai accretionary wedge
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488Pelagic Microbiome: viruses to protists. 16S and 18S data from oceanic samples collected at the chlorophyll maximum.
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83Metagenome data from DNA stable isotope probing of Stiffkey saltmarsh sediment microcosms to investigate methanogenesis from choline
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85UK coast natural seawater Genome sequencing
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1kIncubation of marine methane seep sediments with a bioorthogonal amino acid
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62516S rRNA sequences of bacterioplankton spatial distributions in the Baltic Proper
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1kQueensland Marine Sediment
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211gas hydrate bearing sediment Raw sequence reads
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26kMicrobial community structure is affected by cropping sequences and bio-covers under long-term no-tillage
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239Xylophaga in situ Eclusion Experiment
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9Marine metagenome ICM_LCR
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358marine metagenome Raw sequence reads
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118archaeal community in Haima cold seep in SCS
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1kPatagonian fjord prokaryote community
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398water Raw sequence reads
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28Hydrothermal Deposit Targeted Locus (Loci)
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59A study on microbial functional groups producing a climate related gas in the ocean
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9Anammox bacteria in sediment cores of Daya Bay, China
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166Studies of marine microbial dark matter
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1kBacteria in domestic water-storage containers with or without mosquito larvae
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1kMicrobiome profiling Schlöppnerbrunnen peat cores from different depths
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292Community structure of Archaea in the western North Pacific and the Arctic Ocean
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291marine sediment metagenome Targeted loci environmental
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95Distinctive community structure and high diversity in particle-associated prokaryotes in tropical and subtropical Pacific Ocean surface seawater
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1Diversity and structure of benthic bacterial community from South-Eastern Pacific Ocean, Targeted Locus (Loci)
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954Santa Monica Basin seep sediment incubations to assess C and N sources for F430 synthesis
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273dsrB sequencing of sulfate-reducing microbial communities in Skagerrak and Baltic sediment
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1kAmplicon sequencing of Tara Oceans DNA samples corresponding to size fractions for protists.
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15kCoral
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2kMicrobial Biogeography and Potential Ecological Function Deep Indian Ocean Ridge
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496Comparison of marine sediments from the Beguela upwelling zone
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2k16S Amplicon Data from an Antarctic Cold Seep
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2kMeta_Kosmos
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1kCoastal seawater influenced by the municipal effluents Raw sequence reads
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1White sea picoplankton Metagenome
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425Baltic Sea
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853Transplant and re-transplant microcosms of Baltic Proper and Bothnian Sea bacterioplankton Targeted Locus (Loci)
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790A long-standing complex tropical dipole shapes marine microbial biogeography
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252Shotgun metagenomic analysis of Lake Paajarvi sediment microbes.
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462Archaea
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3kmarine sediment metagenome Metagenome
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84BrdU_MAB_SS Metagenome
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1kBiological rejuvenation of iron oxides in bioturbated marine sediments
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58Amplicon sequencing of Tara Oceans RNA samples corresponding to size fractions for protists.
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999Arctic Ocean
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157Distributions and Abundances of Sublineages of the N2-Fixing Cyanobacterium Candidatus Atelocyanobacterium thalassa (UCYN-A) in the Noumea Lagoon
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1kLife in a toxic environment
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1Marine metagenome ICM_VAG
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86Ocean crust Targeted Locus (Loci)
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8kSediment surface microbial community changes due to phytoplankton addition
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695marine metagenome Targeted Locus (Loci)
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276Green Edge microcosms Raw sequence reads
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623Global Malaspina 2010 deep ocean expedition - rRNA pyrotags
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181Marine subseafloor sediment Targeted Locus (Loci)
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635Cascading influence of inorganic nitrogen sources on DOM production composition lability and microbial community structure in the open ocean
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254peptide incubation in GOM C6 seawater bacteria Metagenome
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43Porcupine Seabight 16S Ribosomal RNA
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171Municipal Pensacola Beach Sand Metagenome
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8kSoil microbial response to organic disturbances
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2kmarine sediment metagenome Targeted loci environmental
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134kMarine metagenomes Metagenome
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1kNuunat- ORMS formation during oil biodegradation at low temperature
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11Red Sea Zooplankton Raw sequence reads
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424Diversity of archaeal and bacterial 16S rRNA gene in marine sediment in Aarhus Bay
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1kRed Sea microbial plankton Raw sequence reads
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29De novo whole metagenome sequencing studies
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341Coastal eutrophication controls the bacterial community composition in different reef habitats of the Spermonde Archipelago, Indonesia.
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2kDevelopment and validation of a multi-trophic metabarcoding biotic index for benthic organic enrichment biomonitoring using a salmon farm case-study.
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1kThermophilic endospores in temperate sediments
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114Diversity and abundance of Bathyarchaeota (MCG) in South China Sea sediments and the implication of its ecological roles
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3kBacterial Biogeography of Coastal Water in the Northern East China Sea
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75Nitrate-storing microorganisms in sediments of the Bornholm Basin
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17Research on Airborne Ice Nucleating Species
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60216S_Sediment_Bolinao
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1kHeterogeneity of methane seep microbiomes in the NE Pacific
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392Diversity of SE Pacific benthic Bacteria and Archaea communities Targeted Locus (Loci)
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169Mediterranean mud volcano flow Targeted loci
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8kSCHEMA_Sediment
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1kSouth China Sea interfaces 16S amplicon sequencing
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5Marine metagenome ICM_GPS
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304Distribution of the Roseobacter clade
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130Microbial diversity studies of Arabian Sea sediment
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201Dark ocean microbial diversity
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89Sediment Metagenome
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154Metagenomes of Sediments from Red Sea Atlantis II and Discovery Deep Brine Pools
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232Metagenomic investigation of six depths from the anchialine Bundera sinkhole
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315DDCA-metagenome
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1kmarine sediment metagenome Targeted loci environmental
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561Sediment bacteria in the Southern Ocean
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37Prospecting of extreme microbial ecosystems associated to minerals (microbialites, microbial mats and endoevaporites) in Puna, Wetlands and Salars of Argentina, Chile and Bolivia