Sediment Metagenome

doi:10.15468/dsykih

Sediment Metagenome

Citation

MGnify (2019). Sediment Metagenome. Sampling event dataset https://doi.org/10.15468/dsykih accessed via GBIF.org on 2024-12-11.

Description

This study presents an evaluation of the impacts of DNA extraction methods, targeted 16S rRNA hypervariable regions and sample origins on the microbial diversity detected by 454-pyrosequencing in sediments from cold seep and hydrothermal vent ecosystems

Sampling Description

Sampling

This study presents an evaluation of the impacts of DNA extraction methods, targeted 16S rRNA hypervariable regions and sample origins on the microbial diversity detected by 454-pyrosequencing in sediments from cold seep and hydrothermal vent ecosystems

Method steps

Pipeline used: https://www.ebi.ac.uk/metagenomics/pipelines/4.1

Taxonomic Coverages

Geographic Coverages

Bibliographic Citations

Cruaud P, Vigneron A, Lucchetti-Miganeh C, Ciron PE, Godfroy A, Cambon-Bonavita MA. 2014. Influence of DNA extraction method, 16S rRNA targeted hypervariable regions, and sample origin on microbial diversity detected by 454 pyrosequencing in marine chemosynthetic ecosystems. Appl Environ Microbiol vol. 80 - DOI:10.1128/aem.00592-14

Contacts

originator
IFREMER

metadata author
IFREMER

administrative point of contact
IFREMER