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GBIF.org (30 August 2021) GBIF Occurrence Download https://doi.org/10.15468/dl.ap6s6e
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70It was verified the impact of irrigation treatments (wet, optimal, dry and very dry) and three potato cultivars on soil microbial community.
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1DOS-1
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86Temporal variation in pesticide biodegradation
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2Sediment river Genome sequencing and assembly
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1nirS-Encoding and nirK-Encoding Denitrifiers in the Sediment of Daya Bay Raw sequence reads
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1North Pacific Subtropical Gyre Microbial Community
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3Herbicide-incubated GBR lagoon microbiomes Targeted loci environmental
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333Impact of rainforest transformation on phylogenetic and functional diversity of soil prokaryotic communities in Sumatra (Indonesia)
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49Macroalgal Morphology affects composition and settlement of microbial communities
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2Salt Marsh Sediments Raw sequence reads
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1Arctic microbiome along Svalbard Cross Shelf transects
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610Bacerial and archaeal diversity in Central Park
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1Illumina high-throughput sequencing of bacterial community
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3Controls on microalgal community structures in cryoconite holes upon high Arctic glaciers, Svalbard
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1Mudflat sediment Metagenome
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14CEFS_16S_ITS
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1ZRCWD sediment metagenome Metagenome
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1microbial diversity Raw sequence reads
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17Baltic Sea high-frequency temporal study 2012 at the Linnaeus Microbial Observatory Targeted Locus (Loci)
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2Effect of size fractionation and DNA extraction on the diversity and composition of prokaryotic and eukaryotic plankton community
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141Raw sequence reads from soil relic DNA study
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1Enhanced pyrene and benzo[a]pyrene degradation by plant root and SMFC
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1XRCWD sediment metagenome Metagenome
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3resuscitation mechanisms during enrichment culture
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1Marine sediment microbial communities in the presence of macrophytes
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1Rifle sediment bacterial community Targeted Locus (Loci)
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2sediment metagenome Metagenome
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5Bacterial Diversity in the East China Sea
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1CPN Metagenome
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4Core MV1012-46.9-JPC2 aDNA metagenomes and negative control
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2Microbial community in marine sediments
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5magnetite Targeted Locus (Loci)
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1Marine photic zone, New Caledonia Lagoon raw sequence reads, nitrogenase amplicons
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730URM - Herbário Pe. Camille Torrand
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10Antarctic Snow Algae 2014/15 16S and 18S Illumina Seq of snow algae communities around Ryder Bay, Antarctica
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1Equatorial Pacific Ocean Targeted loci environmental
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3Variation in freshwater stream sediment community 16S rRNA profiles along an urbanization gradient
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18Bacteria exposure experiment North Sea
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1Microbial diversity of Oslo Fjord Pockmark sediments
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19EMOSE (2017) Inter-Comparison of Marine Plankton Metagenome Analysis Methods
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1marine sediment metagenome Raw sequence reads
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216S sequencing of environmental samples to test the impact of sediment source
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5Freshwater sediment Raw sequence reads
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1Metagenome from mudbank Area,Alappuzha Kerala India
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8Groundwater microbiome
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1BSM marine Targeted Locus
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4FBIP: Diversities of microbiomes from South African arid and natural soils
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8MiSeq 16S rRNA gene (prokaryotic 16S rRNA gene) sequences of 16 SCS sediments
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5Composition and Genetic Diversity of Microbial Communities in Subtropical Coastal Wetland Sediments
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13Marine Bacteria 16S V4 Raw sequence reads
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5Sewer sediments Targeted loci environmental
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33Microbial populations of Lascauxs Apse in relation to collembola and black stains on cave walls.
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1sediment metagenome Metagenome
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1Funtonal metagenomic of salt resistance
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1water sample Raw sequence reads
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3Ocean sediment-basement interface Targeted Locus (Loci)
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2Metagenomics of Jacarepagua Lagoon
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33Soil16S
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4Marine sediment Raw sequence reads
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2CABI Bioscience Genetic Resource Collection
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2Soil DNA extracted from Robinson Ridge, East Antarctica Raw sequence reads
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17Bacterial Biomarkers of Marcellus Shale Activity in Pennsylvania
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20Bacterial diversity in snow from mid-latitude mountain areas: Alps, Eastern Anatolia, Karakoram and Himalaya.
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42616S amplicons New Zealand agricultural soils
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74marine metagenome Metagenome
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1Microbial diversity in the Benguela coastal upwelling system as derived from 16S rRNA sequencing and RNA Stable Isotope Probing (SIP)
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8A practical introduction to microbial molecular ecology through the use of iChips
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28Bacterias y Arqueas de la transición Andino-Amazónica del departamento del Caquetá - Proyecto Colombia BIO
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1seawater metagenome Genome sequencing and assembly
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3Mariana and Kermadec Trench sediment 16S rRNA gene sequencing
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1Bacterial communitiy compositions on natural and artificial substrates in the Spermonde Archipelago, Indonesia
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55Microbial communities associated with Eurasian watermilfoil, water and sediment
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3PAH-contaminated sediment from the Lagos Lagoon, Nigeria
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1uncultured prokaryote Targeted loci environmental
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9Future climate change affects the microbiome and condition of habitat-forming kelp
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1Microbial diversity in the Tongyeong-Geoje coastal area of Korea2
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2Submarine Ligurian Canyons Water Prokaryotic and Protist Communities
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2Sediment bacterial 16S in Hachiro polder.
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1Coral or reef-seawater associated bacteria Targeted Locus (Loci)
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4Mediterranean Contaminated Pelagic communities
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1Hypersaline sapropels Targeted loci environmental
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11MeHg Coal Ash
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128Diversity of microbial community (bacteria, micro-eukaryotes and fungi) in the Passage of Lascaux Cave.
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250Non-target effects of Metarhizium brunneum on soil microbial communities
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3Marine Sediment from the Berkeley Bay Targeted Locus (Loci)
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4Chandeleur Island 2016 Amplicon Study Raw sequence reads
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31Time course change of microbial community in tsunami sediment caused by the Great East Japan Earthquake
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7Microbial biogeography of 925 geothermal springs in New Zealand
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2PCE/TCE dechlorinating microbial community and dehalogenase genes from Wonju Stream, South Korea
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3Microbial processes in iron-rich sediments of Lake Towuti, Indonesia: Disentangling the methane and iron cycles
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216S amplicons Subtropical Frontal Zone New Zealand
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1Microbiome of St. Lawrence estuary sediments
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1Assessing the microbial diversity in Cape Comorin ocean water
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1Marine subseafloor sediment Targeted Locus (Loci)
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3surface sediment Raw sequence reads
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3Diversity of bacterioneuston and bacterioplankton in coastal waters of Misaki, Japan
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1Eukaryotic natural population from Northern Baffin Bay - Raw sequence reads
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2Marine methane seep Targeted Locus (Loci)
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1Spatial variation of bacterioplankton in south Atlantic Bight
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2Surface sediment of Yellow Sea, Bohai Sea and north East China Sea Metagenome
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1marine metagenome
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1Microbial community structure or iron oxyhydroxides rich mound in Satsuma Iwo-jima, Japan
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399Response of soil bacteria to anthropogenic soil variables at large spatial scales
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3Old Rifle sediment Raw sequence reads
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6Tyne oil spill snorkels Raw sequence reads
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47Zostera Marina Ammonification environmental
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638Organic agricultural field soil Raw sequence reads
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46estuary metagenome Raw sequence reads
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104Plant niche rather than soil or species shapes the microbiota
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101Geographically tagged INSDC sequences
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87Bacterial 16s Amplicon Sequencing of the Atlantic Ocean
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14Prokaryotic microbial communities structure in the headwater watchment of Dongjiang River in the south of China
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3Eastern offshore environmental monitoring of Krishna Godavari Basin Bay of Bengal 2013-2016, Funded by: ONGC India
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616S rDNA sequencing
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1Prokaryotic community structure in the deep Southwest Indian Ocean with an emphasis on actinobacteria Targeted Locus (Loci)
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20Abundance, diversity and distribution of Legionellales in wet environments in Sweden
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8Sea spray aerosols at Three California Beaches
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1FBIP: Survey of invertebrate and microbial diversity of the Prince Edward Islands system
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1May 2013 DNA-SIP marine seawater bacteria metagenomic assembly
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10PCB-contaminated sediment Genome sequencing
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1Southern Ocean microorganisms Targeted Locus (Loci)
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1Diesel contamination of Antarctic soils and sediments
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5North Sea plastic incubation and reference communities, raw sequence reads
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11Cryoconite sediments Targeted Locus (Loci)
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116S rRNA genes Random survey
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1Global Ocean Sampling Expedition
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2particle-attached and free-living bacteria kongsfjorden
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1Guaymas Basin and Sonora Margin sediment Targeted loci
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73Microbial biogeography of French caves
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3Saltern of Margherita di Savoia Metagenome
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1Caspian Sea Sediment - 16S Survey Targeted Locus (Loci)
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1DEEPEND: Microbiome and bacterioplankton rRNA gene sequence data collected from Gulf of Mexico seawater samples. Cruises DP03 and DP04 from Jan 2016 - December 2016
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2Bacterial community profiles in a bioreduced uranium contaminated site after reoxidation
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3Short-term interaction of pyrene and cadmium in prokaryotic community in coastal sediment microcosms
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12Nahant Collection
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307Who eats the tough stuff DNA stable isotope probing (SIP) of bacteria and fungi degrading 13C-labelled lignin and cellulose in forest soils
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1Sediment sample Metagenome
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2Variations in prokaryotic community assembly and predicted metabolic potential of surface sediments with geography in the coastal northern Zhejiang, East China Sea
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1permafrost metagenome Targeted loci environmental
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1Eastern Mediterranean Sea Lignin and Xylan enrichments
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1Abalone seed nursing ecosystem Metagenome
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2Lakes ediments of the Amazon River system Raw sequence reads
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1marine sediment metagenome Raw sequence reads
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17Microbial populations of Lascauxs Apse in relation to collembola and black stains on cave walls.
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2Ice Wedge Polygon
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2XRU sediment metagenome Metagenome
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3Drinking water distribution system biofilm samples Metagenome
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9Effects of Fecal Input, Environmental Conditions, and Environmental Sources on Enterococci Concentrations in an Estuarine Ecosystem
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18uncultured prokaryote Targeted loci environmental
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35Mycology Collection Catalogue, Royal North Shore Hospital
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1BES pyrosequencing
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1Antimony contaminated sediments Raw sequence reads
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1Patagonian fjord prokaryote community
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69Bacterial biogeography of a High Arctic ice cap
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3estuary metagenome Raw sequence reads
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1MiSeq 16S rRNA gene (prokaryotic 16S rRNA gene) sequences of 33 Mai Po sediments, including 18 samples from winter and 15 samples from summer
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1There are 3 zooplankton samples from 3 different ponds, we collected sample and use the fresh samples to do DNA extraction directly, then mix them with adjustment guided by the number of species within each of them. At last, use Hiseq-2599 PE-150 to do NGS work
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2Bacterial community structure and their predicted functions in coastal sediments
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7Marine metagenomes from the bioGEOTRACES project
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1Microbial communities in the ocean Raw sequence reads
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1Qinghai Lake sediments Metagenome
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8Microbiome profiling Schlöppnerbrunnen peat cores from different depths
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13Microbial diversity in benthic stream sediment
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1Uncultered bacterium Targeted Locus (Loci)
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35DSMZ Prokarya Collection Catalogue
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2Records of the Western Australian Microbial Culture Collection
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8marine metagenome Metagenome
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6Coral
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1Microbial Biogeography and Potential Ecological Function Deep Indian Ocean Ridge
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816S rDNA amplicon of Bacteria and Archaea Metagenome
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154Soil Microbial communities from weed germination bioassay targeted loci environmental
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116S Amplicon Data from an Antarctic Cold Seep
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1Comparison of marine sediments from the Beguela upwelling zone
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8Meta_Kosmos
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1Bacterias y Actinobacterias aisladas del PNN los Nevados para estudios de actividad antimicriobana
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5Temporal sampling of marine metagenomes from Station ALOHA and BATS
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1Baltic Sea
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4Transplant and re-transplant microcosms of Baltic Proper and Bothnian Sea bacterioplankton Targeted Locus (Loci)
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307Soil marker gene sequences across the Nutrient Network
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1Shotgun metagenomic analysis of Lake Paajarvi sediment microbes.
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28soil metagenome Raw sequence reads
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1Archaea
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30the under-explored coal gangue and the adjacent acid mine drainage creek soil Raw sequence reads
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7marine sediment metagenome Metagenome
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5Microbial diversity of marine sediments
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1sediment metagenome Raw sequence reads
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2Biological rejuvenation of iron oxides in bioturbated marine sediments
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1Uncultured Environmental Isolate Targeted loci environmental
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494MGYS00005313
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1marine sediment Raw sequence reads
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116S rRNA gene pyrosequencing and clone library revealed highly diverse microbial communities in natural marine biofilms
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5Colección de Tejidos del Instituto de Investigación de Recursos Biológicos Alexander von Humboldt (IAvH-CT)
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115Bacterial diversity and community composition in grassland and forest soils of the German Biodiversity Exploratories
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1Arctic Ocean
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4Microbial communities in estuarine sediments
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1DOW-2
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1MICROBIS database
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1International Collection of Microorganisms from Plants (ICMP)
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2Biological Impacts of Ocean Acidification
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1Distinctive Microbial Community Structure in Highly Stratified Deep-Sea Brine Water Columns
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4Seasonal and spatial diversity of bacterial communities in marine sediments of Ningbo Xiangshan Coastal Ocean
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9Bacterial communities in agricultural soils under contrasting agronomic managements and biomes of Argentina
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1microbial communities in long-term e-waste contaminated river sediments
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334Records of the Western Australian Mycology Culture Collection
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13Temperature shifts simulating secondary oil recovery
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2Po river Prodelta and Mar Piccolo of Taranto surface sediments bacterial communities targeted loci
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116S rRNA amplicon sequences of Baltic Sea bacterioplankton
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1Abyssal Baseline Study & Geophysical Survey (ABYSSLINE 02)_AB01_Re-sequenced Targeted loci environmental
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2marine sediment metagenome Metagenome
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1UK coast natural seawater Genome sequencing
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4Incubation of marine methane seep sediments with a bioorthogonal amino acid
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5PREsediment Targeted Locus (Loci)
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1Microbial ecology of archaeal community in sediment from adjacent waters of Rushan Bay
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7Queensland Marine Sediment
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1gas hydrate bearing sediment Raw sequence reads
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195Microbial community structure is affected by cropping sequences and bio-covers under long-term no-tillage
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3Microbial diversity before and after tidal re-instatement
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6Camargue soil and sediment 16S community profiling
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569Compost microbe establishment and growth in agricultural soils
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8Microbial community in PAH-contaminated riverine sediments
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1Bacterias aisladas de líquenes en el Parque Nacional Natural Chingaza
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213Soil microbial diversity in the Maintenance of Exotic vs. Native Diversity experiment (depth study)
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3ZRM sediment metagenome Metagenome
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1Santa Barbara Basin Raw sequence reads
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1archaeal community in Haima cold seep in SCS
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3Transitional subsurface-to-surface microbial diversity in a terrestrial serpentinizing seep (Manleluag, Pangasinan, the Philippines)
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216S rRNA metagenomic investigation of arsenotrophic bacteriome of ground water and soil from arsenic-prone area of Bangladesh
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73Effects of organic matter manipulation on archaeal, bacterial, and fungal community assembly
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9Microbial community response on waste water discharge in recipient freshwater sediments
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3This workpackage details only the prokaryote (Archaea and Bacteria) analyses for the MicroPolar project.
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11)sediments; 2) coral floc Metagenome
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1Bacteria community in the southern East China Sea
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12Metabarcoding surveys of the Arctic marine environment
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22Soil metagenome from healthy and unhealthy agricultural soil
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2Fe3+ and Mn4+ - induced changes in microbial communities of boreal lake sediments
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2Hot springs Metagenome
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1Fluctuating redox regimes raw sequence reads
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2Coastal Sediment Bacterial Community Alterations in Association with Sudden Vegetation Dieback
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1Microbial community in permeable intertidal sediment
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2Cave sediment Metagenome
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3Study of microbial diversity from sediment samples of the SaiGon-DongNai system
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1DSMZ Bacteria
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1photoautotrophic_biofilm
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2Depth profile of ancient sediments
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1surface sediment Raw sequence reads
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15Bacterial 16S rRNA gene sequencing of Antarctic soil
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6Lake sediment sequencing
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14Microbial community in on-site tsunami sediment caused by the Great East Japan Earthquake
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4Sediment surface microbial community changes due to phytoplankton addition
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27Temporal effect of plant diversity and oiling on nitrogen cycling in marsh sediments
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4Global Malaspina 2010 deep ocean expedition - rRNA pyrotags
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4Diversities of bacteria and archaea in Sanya mangrove sediments
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70Soil bacterial communities (Hainich National Park)
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1Effects of triclosan on bacterial community composition in natural seawater microcosms
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186Soil bacterial diversity is associated with human population density in urban greenspaces
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1Porcupine Seabight 16S Ribosomal RNA
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1Municipal Pensacola Beach Sand Metagenome
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74Soil microbial response to organic disturbances
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1ZRD sediment metagenome Metagenome
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458Soil microbial distribution
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1Deep Subsurface Basalts Targeted Locus (Loci)
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5Bacterial community of river sediment enriched with polycyclic aromatic hydrocarbons
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130Marine metagenomes Metagenome
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1soil bacteria and fungi Targeted loci environmental
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6Nuunat- ORMS formation during oil biodegradation at low temperature
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2Microbial ecology of bacteiral community in sediment from adjacent waters of Rushan Bay
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3Diversity of archaeal and bacterial 16S rRNA gene in marine sediment in Aarhus Bay
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1Coastal eutrophication controls the bacterial community composition in different reef habitats of the Spermonde Archipelago, Indonesia.
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9microbial community composition of marine water and sediment
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1Diversity and abundance of Bathyarchaeota (MCG) in South China Sea sediments and the implication of its ecological roles
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2Thermophilic endospores in temperate sediments
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1Bacterial Biogeography of Coastal Water in the Northern East China Sea
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1sediment metagenome Raw sequence reads
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1Research on Airborne Ice Nucleating Species
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2Diversity of SE Pacific benthic Bacteria and Archaea communities Targeted Locus (Loci)
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48SCHEMA_Sediment
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3South China Sea interfaces 16S amplicon sequencing
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6Marine sediment metagenome
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27Sediment Metagenome Raw sequence reads
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1Bacterial community diverisity
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1freshwater sediment metagenome Metagenome
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1Sediment Metagenome
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2Metagenomic investigation of six depths from the anchialine Bundera sinkhole
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2DDCA-metagenome
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11marine sediment metagenome Targeted loci environmental
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1Successional trajectories of coastal bacterioplankton communities in response to co-exposure of cadmium and phenanthrene
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1Niche partitioning of methanotrophs in stratified lakes
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1Spatial and environmental variation in whole microbial communities in Fildes Bay, King George Island, Antarctica Raw sequence reads