Niche partitioning of methanotrophs in stratified lakes

doi:10.15468/rcv3bs

Niche partitioning of methanotrophs in stratified lakes

Citation

MGnify (2020). Niche partitioning of methanotrophs in stratified lakes. Sampling event dataset https://doi.org/10.15468/rcv3bs accessed via GBIF.org on 2020-10-22.

Description

A detailed sampling of the water column in proximity to the oxygen-methane interface of four stratified Swiss lakes was performed. Amplicon sequencing analysis of 16S rRNA and pmoA genes and 16S rRNA and pmoA transcripts was used to investigate the active methane-oxidizing bacteria inhabiting the oxygen-methane resource gradient.

Sampling Description

Sampling

A detailed sampling of the water column in proximity to the oxygen-methane interface of four stratified Swiss lakes was performed. Amplicon sequencing analysis of 16S rRNA and pmoA genes and 16S rRNA and pmoA transcripts was used to investigate the active methane-oxidizing bacteria inhabiting the oxygen-methane resource gradient.

Method steps

Pipeline used: https://www.ebi.ac.uk/metagenomics/pipelines/4.1

Taxonomic Coverages

Geographic Coverages

Bibliographic Citations

Mayr MJ, Zimmermann M, Guggenheim C, Brand A, Bürgmann H. 2020. Niche partitioning of methane-oxidizing bacteria along the oxygen-methane counter gradient of stratified lakes. ISME J vol. 14 - DOI:10.1038/s41396-019-0515-8

Contacts

originator
EAWAG

metadata author
EAWAG

administrative point of contact
EAWAG