Niche partitioning of methanotrophs in stratified lakes
Citation
MGnify (2022). Niche partitioning of methanotrophs in stratified lakes. Sampling event dataset https://doi.org/10.15468/rcv3bs accessed via GBIF.org on 2025-06-16.Description
A detailed sampling of the water column in proximity to the oxygen-methane interface of four stratified Swiss lakes was performed. Amplicon sequencing analysis of 16S rRNA and pmoA genes and 16S rRNA and pmoA transcripts was used to investigate the active methane-oxidizing bacteria inhabiting the oxygen-methane resource gradient.Sampling Description
Sampling
A detailed sampling of the water column in proximity to the oxygen-methane interface of four stratified Swiss lakes was performed. Amplicon sequencing analysis of 16S rRNA and pmoA genes and 16S rRNA and pmoA transcripts was used to investigate the active methane-oxidizing bacteria inhabiting the oxygen-methane resource gradient.Method steps
- Pipeline used: https://www.ebi.ac.uk/metagenomics/pipelines/4.1
Taxonomic Coverages
Geographic Coverages
Bibliographic Citations
- Mayr MJ, Zimmermann M, Guggenheim C, Brand A, Bürgmann H. 2020. Niche partitioning of methane-oxidizing bacteria along the oxygen-methane counter gradient of stratified lakes. ISME J vol. 14 - DOI:10.1038/s41396-019-0515-8
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