We’re sorry, but GBIF doesn’t work properly without JavaScript enabled.
Our website has detected that you are using an outdated insecure browser that will prevent you from using the site. We suggest you upgrade to a modern browser.
{{nav.loginGreeting}}
  • Get data
      • Occurrences
      • GBIF API
      • Species
      • Datasets
      • Occurrence snapshots
      • Hosted portals
      • Trends
  • How-to
    • Share data

      • Quick-start guide
      • Dataset classes
      • Data hosting
      • Standards
      • Become a publisher
      • Data quality
      • Data papers
    • Use data

      • Featured data use
      • Citation guidelines
      • GBIF citations
      • Citation widget
  • Tools
    • Publishing

      • IPT
      • Data validator
      • Scientific Collections
      • Suggest a dataset
      • New data model ⭐️
    • Data access and use

      • Hosted portals
      • Data processing
      • Derived datasets
      • rgbif
      • pygbif
      • MAXENT
      • Tools catalogue
    • GBIF labs

      • Species matching
      • Name parser
      • Sequence ID
      • Relative observation trends
      • GBIF data blog
  • Community
    • Network

      • Participant network
      • Nodes
      • Publishers
      • Network contacts
      • Community forum
      • alliance for biodiversity knowledge
    • Volunteers

      • Mentors
      • Ambassadors
      • Translators
      • Citizen scientists
    • Activities

      • Capacity enhancement
      • Programmes & projects
      • Training and learning resources
      • Data Use Club
      • Living Atlases
  • About
    • Inside GBIF

      • What is GBIF?
      • Become a member
      • Governance
      • Implementation plan
      • Work Programme
      • Funders
      • Partnerships
      • Release notes
      • Contacts
    • News & outreach

      • News
      • Newsletters and lists
      • Events
      • Ebbe Nielsen Challenge
      • Graduate Researchers Award
      • Science Review
      • Data use
  • User profile

Bacterial community profiles in a bioreduced uranium contaminated site after reoxidation

Dataset homepage

Citation

MGnify (2019). Bacterial community profiles in a bioreduced uranium contaminated site after reoxidation. Sampling event dataset https://doi.org/10.15468/n5r6lk accessed via GBIF.org on 2023-02-07.

Description

A site contaminated with uranium was bioreduced through multiple injections of ethanol to immobilize the uranium in situ. Then it was allowed to reoxidize via the invasion of low-pH , high-nitrate groundwater back into the reduced zone for about 4 years. To examine the biogeochemical response, high-throughput sequencing were applied to characterize bacterial population shifts.

Sampling Description

Sampling

A site contaminated with uranium was bioreduced through multiple injections of ethanol to immobilize the uranium in situ. Then it was allowed to reoxidize via the invasion of low-pH , high-nitrate groundwater back into the reduced zone for about 4 years. To examine the biogeochemical response, high-throughput sequencing were applied to characterize bacterial population shifts.

Method steps

  1. Pipeline used: https://www.ebi.ac.uk/metagenomics/pipelines/4.1

Taxonomic Coverages

Geographic Coverages

Bibliographic Citations

  1. Bagwell CE, Noble PA, Milliken CE, Li D, Kaplan DI. 2018. Amplicon Sequencing Reveals Microbiological Signatures in Spent Nuclear Fuel Storage Basins. Front Microbiol vol. 9 - DOI:10.3389/fmicb.2018.00377
  2. Li B, Wu WM, Watson DB, Cardenas E, Chao Y, Phillips DH, Mehlhorn T, Lowe K, Kelly SD, Li P, Tao H, Tiedje JM, Criddle CS, Zhang T. 2018. Bacterial Community Shift and Coexisting/Coexcluding Patterns Revealed by Network Analysis in a Uranium-Contaminated Site after Bioreduction Followed by Reoxidation. Appl Environ Microbiol vol. 84 - DOI:10.1128/aem.02885-17

Contacts

originator
The University of Hong Kong
metadata author
The University of Hong Kong
administrative point of contact
The University of Hong Kong
What is GBIF? API FAQ Newsletter Privacy Terms and agreements Citation Code of Conduct Acknowledgements
Contact GBIF Secretariat Universitetsparken 15 DK-2100 Copenhagen Ø Denmark