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GBIF.org (19 March 2019) GBIF Occurrence Download https://doi.org/10.15468/dl.xjbgpf
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Archaea
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1Baselines Initiative 16S rRNA gene dataset: Baselines Amplicon Release 1 (R1) Indian Ocean 2015
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4Mesocosm Targeted Locus (Loci)
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268Comparative 16S analysis of hydrothermal vent samples from the Mid-Atlantic Ridge (MAR)
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7Microcosms Metagenome
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4kEffects of organic matter manipulation on archaeal, bacterial, and fungal community assembly
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63Archaea Collection in BCRC
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205SCS SEATS Raw sequence reads
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531This workpackage details only the prokaryote (Archaea and Bacteria) analyses for the MicroPolar project.
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145Microbial communities associated with ferromanganese nodules and the surrounding sediments
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33Seawater Metagenome
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1Botany (UPS)
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7Marine Metagenome
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8DSMZ Bacteria
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15Sea water sample Targeted Locus (Loci)
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6Atlantic salmon microbiota
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38Water and Sediment samples Targeted loci environmental
-
56Microbial indicators of anthropogenic marine pollution identified by 16S and 18S metagenomic library analysis
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422Microbial diversity in the Tongyeong-Geoje coastal area of Korea
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19IFO Bacteria database
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1nifH diversity in the North Pacific Ocean
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334It was verified the impact of irrigation treatments (wet, optimal, dry and very dry) and three potato cultivars on soil microbial community.
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639Microbial community structure and dynamics in the oxygen minimum zone of the Northeast subarctic Pacific Ocean
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116S rRNA metagenomic investigation of arsenotrophic bacteriome of ground water and soil from arsenic-prone area of Bangladesh
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10Microbial Diversity in Antarctic marine sediments (Admiralty Bay and Bransfield Strait)
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7Microbial induced mineral precipitations caused by nitrate treatment for souring control during microbial enhanced oil recovery (MEOR)
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3Bacteria Collection in BCRC
-
50Trichodesmium spiralis associated microbiome Targeted loci
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884North Pacific Subtropical Gyre Microbial Community
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100Seawater Targeted Locus (Loci)
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872Macroalgal Morphology affects composition and settlement of microbial communities
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265Microbial diversity in the Tongyeong-Geoje coastal area of Korea
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6Marine Water Column Samples Targeted loci environmental
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103INVESTIGATING THE MICROBIAL EUKARYOTIC COMMUNITIES IN THE SURFACE WATERS OF THE ARAFURA SEA AND CORAL SEA
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33Microbial associations in temperate marine copepods from the Gulf of Maine
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38Bacterial communities from the water column and the surface sediments along a transect in the East Sea (Sea of Japan)
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5Ecología de comunidades microbianas en las aguas subterráneas de Cuatrociénegas, Coahuila
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562Marine metagenome Targeted loci environmental
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35Prokaryotic community response to microalgal lysates
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153Baltic Sea high-frequency temporal study 2012 at the Linnaeus Microbial Observatory Targeted Locus (Loci)
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332Effect of size fractionation and DNA extraction on the diversity and composition of prokaryotic and eukaryotic plankton community
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346resuscitation mechanisms during enrichment culture
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110Diet analysis of Japanese sardine and Pacific round herring larvae
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358Bacterial Diversity in the East China Sea
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104Limited influence of primary treated sewage waters on bacterial abundance, production and community composition in coastal seawaters
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175marine sediment metagenome Raw sequence reads
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4Comparative study in validity of three regions of 18S-rRNA for eukaryote amplicon sequence analyses
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48Species-specific associations between bacterioplankton and photosynthetic picoeukaryotes
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561Impact of a major inflow event on the composition and distribution of bacterioplankton communities in the Baltic Sea
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583Microbial community in marine sediments
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60Oceanic microplankton do not adhere to the latitudinal diversity gradient
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6Spirulina necromass degradartion in arctic marine sediments
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2Japan Collection of Microorganisms(Bacteria)
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19Antarctic Snow Algae 2014/15 16S and 18S Illumina Seq of snow algae communities around Ryder Bay, Antarctica
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170Equatorial Pacific Ocean Targeted loci environmental
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91suspended particulate matter Raw sequence reads
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3CARBOM cruise 2013 flow cytometry sorted phytoplankton
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1kBacteria exposure experiment North Sea
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150Microbial Processes and Biodiversity: OCEAN
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1kEMOSE (2017) Inter-Comparison of Marine Plankton Metagenome Analysis Methods
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57marine sediment metagenome Raw sequence reads
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3The cryptogamy collection (PC) at the Herbarium of the Muséum national d'Histoire Naturelle (MNHN - Paris)
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173Groundwater microbiome
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59the assembly of abundant and rare bacterioplankton subcommunities in three subtropical bays
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603Extracellular DNA marine sediment Targeted Locus (Loci)
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180Reciprocal transplantation experiment of salt marsh sediments Targeted loci
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223MiSeq 16S rRNA gene (prokaryotic 16S rRNA gene) sequences of 16 SCS sediments
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306IMPACT OF SAHARAN DUST DEPOSITION ON BACTERIOPLANKTON IN MARINE SURFACE WATER
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22CCA_pathobiome
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795Little Sippewissett Marsh Targeted Locus (Loci)
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30Ocean sediment-basement interface Targeted Locus (Loci)
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128Aarhus Bay sediment PCR amplified product sequencing
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430Standard filtration practices significantly distort planktonic microbial diversity estimates
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372Marine sediment Raw sequence reads
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4Soil DNA extracted from Robinson Ridge, East Antarctica Raw sequence reads
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82Bacterial diversity in snow from mid-latitude mountain areas: Alps, Eastern Anatolia, Karakoram and Himalaya.
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1Mount Hope Bay bacteria Targeted Locus (Loci)
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53Sediment Microcosm Metagenome
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1kMicrobial diversity in the Benguela coastal upwelling system as derived from 16S rRNA sequencing and RNA Stable Isotope Probing (SIP)
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46A practical introduction to microbial molecular ecology through the use of iChips
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735Bacterias y Arqueas de la transición Andino-Amazónica del departamento del Caquetá - Proyecto Colombia BIO
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3kYarwun Port Curtis Sediment Bacterial 16S rRNA (V6) 454 sequence
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1kMariana and Kermadec Trench sediment 16S rRNA gene sequencing
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203Bacterial communitiy compositions on natural and artificial substrates in the Spermonde Archipelago, Indonesia
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475ADDOMEx
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358Microbial diversity in the Tongyeong-Geoje coastal area of Korea2
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186Marine bacteria metagenome
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78Submarine Ligurian Canyons Water Prokaryotic and Protist Communities
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7Environmental zooplankton Targeted Locus (Loci)
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139Mediterranean Contaminated Pelagic communities
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366ADDOMEx Tier 3 Experiments: Mesocosm Si with Gulf of Mexico coastal waters
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24616S rRNA amplicon from marine Bacteria Raw sequence reads
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8Biodiversidad microbiana de los ecosistemas marinos en la Isla Cayo Serrana durante la Expedición Seaflower 2016 - Proyecto Colombia BIO
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18Genebank, National Institute of Agrobiological Sciences
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7Diversity of microbial community (bacteria, micro-eukaryotes and fungi) in the Passage of Lascaux Cave.
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276Marine Sediment from the Berkeley Bay Targeted Locus (Loci)
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679Hydrate Ridge, OR - Deep sea cold seep ecosystem Targeted Locus (Loci)
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24CABI Bioscience Fungus Collection
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61Archaea Collection in BCRC
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4envinronment Metagenome
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145marine Archaea metagenome
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29Centre de Ressources Biologiques de l'Institut Pasteur
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448Pelagic Gulf of Mexico Targeted loci environmental
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200Gulf of Mexico open ocean Targeted Locus (Loci)
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28716S amplicons Subtropical Frontal Zone New Zealand
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13Comparison of copper contaminated soils, with similar uncontaminated controls.
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175Sea water microorganisms Raw sequence reads
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210Taxonomic study of endospores in a marine sediment
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28216S data describing Antarctic benthic sediment
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364Northern Gulf of Mexico Hypoxia can Alter Sediment Communities of Nitrifying Archaea
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71Distribution and composition of thiotrophic mats in the hypoxic zone of the Black Sea (150-170m water depth, Crimea margin)
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19ocean bacteria Metagenomic assembly
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3Manchester Museum, University of Manchester, Botany Collection
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309Nutrient addition mesocosm experiment Targeted Locus (Loci)
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1Eukaryotic natural population from Northern Baffin Bay - Raw sequence reads
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1kMarine methane seep Targeted Locus (Loci)
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2kZostera Marina Ammonification environmental
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51Biogeography of pelagic bacterioplankton across an antagonistic temperature-salinity gradient in the Red Sea
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66Archaea Arctic Ocean Survey Targeted Locus (Loci)
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2kBacterial 16s Amplicon Sequencing of the Atlantic Ocean
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2kGeographically tagged INSDC sequences
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13Dissolved compounds excreted by copepods reshape the diversity and the activity of marine bacterioplankton community
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8Marine metagenome ICM_AWP
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16Microbial eukaryotes
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278Temporal dynamics of the particle-attached and free-living microbial communities from coastal seawater
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144Microbial communities in marine surface water
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76Marine sediment metagenome ICM_FIS
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153Gulf Oil Spill underwater oil plume samples Targeted Locus (Loci)
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278Abundance, diversity and distribution of Legionellales in wet environments in Sweden
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29Diet analysis of Pacific Bluefin Tuna larvae
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468Sea spray aerosols at Three California Beaches
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1Diesel contamination of Antarctic soils and sediments
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225Southern Ocean microorganisms Targeted Locus (Loci)
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13Ocean Acidification baceria sample Targeted loci environmental
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55Southern Ocean
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20Metabolically active microbial communities in marine sediment under high-CO2 and low-pH extremes
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19Global Ocean Sampling Expedition
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25Effect of genetics and environment on gut bacteria in Anopheles and Aedes mosquitoes.
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2Ocean Water Metagenome
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29Bacterial communities in sandy sediment at submarine volcanic vents off Panarea Island (Italy)
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64Marine metagenome ICM_JRV
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422Caspian Sea Sediment - 16S Survey Targeted Locus (Loci)
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2kDEEPEND: Microbiome and bacterioplankton rRNA gene sequence data collected from Gulf of Mexico seawater samples. Cruises DP03 and DP04 from Jan 2016 - December 2016
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1kShort-term interaction of pyrene and cadmium in prokaryotic community in coastal sediment microcosms
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1Bacterial community dynamics during polysaccharide degradation at contrasting sites in the Southern and Atlantic Oceans
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1kNahant Collection
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148US East Coast Salt Marshes Targeted Locus (Loci)
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70aquatic bacterial metagenome Raw sequence reads
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24rDNA amplicon sequencing of Western North Atlantic microbial community
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224Marine sediment metagenome ICM_GMS
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479Variations in prokaryotic community assembly and predicted metabolic potential of surface sediments with geography in the coastal northern Zhejiang, East China Sea
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6Bacteria Collection in BCRC
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249Zooplankton communities in the coastal water of northeastern Hokkaido
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46Metagenetic analysis of the 18S nuclear small subunit ribosomal RNA gene of a mixed zooplankton assemblage was carried out using the 454 pyrosequencing platform.
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136CTD water column metabarcoding
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114marine sediment metagenome Raw sequence reads
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3Intertidal Mixing Zone Targeted Locus (Loci)
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1Deposit_of_Patent_Bio-Material_in_BCRC
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1Metagenomic sequence from soil bacteria
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408Effects of Fecal Input, Environmental Conditions, and Environmental Sources on Enterococci Concentrations in an Estuarine Ecosystem
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64Deep mud-volcano biosphere in the Nankai accretionary wedge
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172Pelagic Microbiome: viruses to protists. 16S and 18S data from oceanic samples collected at the chlorophyll maximum.
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125Metagenome data from DNA stable isotope probing of Stiffkey saltmarsh sediment microcosms to investigate methanogenesis from choline
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323Patagonian fjord prokaryote community
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7CECT Spanish Type Culture Collection(Bacteria)
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226water Raw sequence reads
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23A Method for Studying Protistan Diversity Using Massively Parallel Sequencing of V9 Hypervariable Regions of Small-Subunit Ribosomal RNA Genes
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2Amundsen Gulf Overwintering Eukaryote Community
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41Hydrothermal Deposit Targeted Locus (Loci)
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15Anammox bacteria in sediment cores of Daya Bay, China
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175Studies of marine microbial dark matter
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21Bacteria in domestic water-storage containers with or without mosquito larvae
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1kCommunity structure of Archaea in the western North Pacific and the Arctic Ocean
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109marine sediment metagenome Targeted loci environmental
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15Distinctive community structure and high diversity in particle-associated prokaryotes in tropical and subtropical Pacific Ocean surface seawater
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1Diversity and structure of benthic bacterial community from South-Eastern Pacific Ocean, Targeted Locus (Loci)
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1iNaturalist Research-grade Observations
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398Northern Gulf of Mexico Hypoxic Zone Raw sequence reads
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89Whale fall
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36Microbial diversity of marine sediments from Ross Sea
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116S and 18S sequences from the epiphytic biofilm on leaves of Enhalus acroides
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725Seasonal and spatial diversity of bacterial communities in marine sediments of Ningbo Xiangshan Coastal Ocean
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2Microbial diversity associated with copepods in the North Atlantic subtropical gyre
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2Bacterial diversity in the South Adriatic Sea during winter of 2016
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146marine sediment metagenome Raw sequence reads
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125Archaea diversity in marine sediment
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1kPolymetallic nodule field Targeted loci environmental
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824Po river Prodelta and Mar Piccolo of Taranto surface sediments bacterial communities targeted loci
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637eDNA_Subseafloor
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261Abyssal Baseline Study & Geophysical Survey (ABYSSLINE 02)_AB01_Re-sequenced Targeted loci environmental
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209Marine methane seep Targeted Locus (Loci)
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920marine sediment metagenome Metagenome
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1UK coast natural seawater Genome sequencing
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247Incubation of marine methane seep sediments with a bioorthogonal amino acid
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1216S rRNA sequences of bacterioplankton spatial distributions in the Baltic Proper
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987Queensland Marine Sediment
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175gas hydrate bearing sediment Raw sequence reads
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2Xylophaga in situ Eclusion Experiment
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56Marine metagenome ICM_LCR
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235marine metagenome Raw sequence reads
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497archaeal community in Haima cold seep in SCS
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1716S rRNA metagenomic investigation of arsenotrophic bacteriome of ground water and soil from arsenic-prone area of Bangladesh
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1BCCM/LMG Bacteria collection
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590DSMZ Prokarya Collection Catalogue
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474Santa Monica Basin seep sediment incubations to assess C and N sources for F430 synthesis
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524dsrB sequencing of sulfate-reducing microbial communities in Skagerrak and Baltic sediment
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4kAmplicon sequencing of Tara Oceans DNA samples corresponding to size fractions for protists.
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4kCoral
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486Microbial Biogeography and Potential Ecological Function Deep Indian Ocean Ridge
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269Comparison of marine sediments from the Beguela upwelling zone
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1k16S Amplicon Data from an Antarctic Cold Seep
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226Coastal seawater influenced by the municipal effluents Raw sequence reads
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5White sea picoplankton Metagenome
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3Type Localities for organisms and fossils first described from Antarctica
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61Baltic Sea
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11Transplant and re-transplant microcosms of Baltic Proper and Bothnian Sea bacterioplankton Targeted Locus (Loci)
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337A long-standing complex tropical dipole shapes marine microbial biogeography
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121Archaea
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616marine sediment metagenome Metagenome
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714Biological rejuvenation of iron oxides in bioturbated marine sediments
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96Amplicon sequencing of Tara Oceans RNA samples corresponding to size fractions for protists.
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216Arctic Ocean
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10Distributions and Abundances of Sublineages of the N2-Fixing Cyanobacterium Candidatus Atelocyanobacterium thalassa (UCYN-A) in the Noumea Lagoon
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7Life in a toxic environment
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13kMICROBIS database
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1Marine metagenome ICM_VAG
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71Ocean crust Targeted Locus (Loci)
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66Sediment surface microbial community changes due to phytoplankton addition
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14marine metagenome Targeted Locus (Loci)
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92Green Edge microcosms Raw sequence reads
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94Global Malaspina 2010 deep ocean expedition - rRNA pyrotags
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69Marine subseafloor sediment Targeted Locus (Loci)
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120Cascading influence of inorganic nitrogen sources on DOM production composition lability and microbial community structure in the open ocean
-
1peptide incubation in GOM C6 seawater bacteria Metagenome
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12Porcupine Seabight 16S Ribosomal RNA
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284Soil microbial response to organic disturbances
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1kmarine sediment metagenome Targeted loci environmental
-
350Marine metagenomes Metagenome
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172Nuunat- ORMS formation during oil biodegradation at low temperature
-
116Red Sea Zooplankton Raw sequence reads
-
723Diversity of archaeal and bacterial 16S rRNA gene in marine sediment in Aarhus Bay
-
202Red Sea microbial plankton Raw sequence reads
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1De novo whole metagenome sequencing studies
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664Development and validation of a multi-trophic metabarcoding biotic index for benthic organic enrichment biomonitoring using a salmon farm case-study.
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241Thermophilic endospores in temperate sediments
-
258Diversity and abundance of Bathyarchaeota (MCG) in South China Sea sediments and the implication of its ecological roles
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749Bacterial Biogeography of Coastal Water in the Northern East China Sea
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181Nitrate-storing microorganisms in sediments of the Bornholm Basin
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36516S_Sediment_Bolinao
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1kHeterogeneity of methane seep microbiomes in the NE Pacific
-
85Biological Resource Center, Department of Biotechnology, National Institute of Technology and Evaluation
-
408Diversity of SE Pacific benthic Bacteria and Archaea communities Targeted Locus (Loci)
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480Japan Collection of Microorganisms, RIKEN BioResource Center
-
503Mediterranean mud volcano flow Targeted loci
-
5kSCHEMA_Sediment
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61ATCC Bacteria Collection Catalog
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308South China Sea interfaces 16S amplicon sequencing
-
72Marine metagenome ICM_GPS
-
1CCUG Microorganisms databases(Bacteria)
-
2Microbial diversity studies of Arabian Sea sediment
-
384Dark ocean microbial diversity
-
70Sediment Metagenome
-
189Metagenomes of Sediments from Red Sea Atlantis II and Discovery Deep Brine Pools
-
151Metagenomic investigation of six depths from the anchialine Bundera sinkhole
-
282marine sediment metagenome Targeted loci environmental
-
12Sediment bacteria in the Southern Ocean