Ocean Sampling Day (OSD) 2014: AUTHORITY-RAW amplicon and metagenome sequencing study from the June solstice in the year 2014
Citation
MGnify (2022). Ocean Sampling Day (OSD) 2014: AUTHORITY-RAW amplicon and metagenome sequencing study from the June solstice in the year 2014. Sampling event dataset https://doi.org/10.15468/3zbdqm accessed via GBIF.org on 2024-10-06.Description
Sequencing of amplicon and metagenome samples from the main OSD event, representing joint effort of marine sampling stations around the world. The OSD campaign aims to analyze marine microbial community compositions and embedded functional traits on a single day, the solstice on 2014-06-21.Sampling Description
Sampling
Sequencing of amplicon and metagenome samples from the main OSD event, representing joint effort of marine sampling stations around the world. The OSD campaign aims to analyze marine microbial community compositions and embedded functional traits on a single day, the solstice on 2014-06-21.Method steps
- Pipeline used: https://www.ebi.ac.uk/metagenomics/pipelines/5.0
Taxonomic Coverages
Geographic Coverages
Bibliographic Citations
- Mitchell AL, Scheremetjew M, Denise H, Potter S, Tarkowska A, Qureshi M, Salazar GA, Pesseat S, Boland MA, Hunter FMI, Ten Hoopen P, Alako B, Amid C, Wilkinson DJ, Curtis TP, Cochrane G, Finn RD. 2018. EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies. Nucleic Acids Res vol. 46 - DOI:10.1093/nar/gkx967
- Gibson R, Alako B, Amid C, Cerdeño-Tárraga A, Cleland I, Goodgame N, Ten Hoopen P, Jayathilaka S, Kay S, Leinonen R, Liu X, Pallreddy S, Pakseresht N, Rajan J, Rosselló M, Silvester N, Smirnov D, Toribio AL, Vaughan D, Zalunin V, Cochrane G. 2016. Biocuration of functional annotation at the European nucleotide archive. Nucleic Acids Res vol. 44 - DOI:10.1093/nar/gkv1311
Contacts
originatorOSD-CONSORTIUM
metadata author
OSD-CONSORTIUM
administrative point of contact
OSD-CONSORTIUM