Appliaction of metagenomic technique for isolation of microbes from mangroves for potential use in biofertilization and bioremediation

doi:10.15468/jqtrkg

Appliaction of metagenomic technique for isolation of microbes from mangroves for potential use in biofertilization and bioremediation

Citation

MGnify (2019). Appliaction of metagenomic technique for isolation of microbes from mangroves for potential use in biofertilization and bioremediation. Sampling event dataset https://doi.org/10.15468/jqtrkg accessed via GBIF.org on 2023-02-03.

Description

The sequences submitted are the fingal ITS metagenomic. The mangrove ecosystem of Goa forms a very important bio-repository. Therefore, the ITS metagenomic DNA sequences obtained from Goa coastline will help to develop a gross idea about the fungal community members present in the mangrove sediments of North and South Goa. This is the first report of fungal metagenomic sequences for Mandovi & Zuari mangrove ecosystem obtained through illumina Miseq platform.

Sampling Description

Sampling

The sequences submitted are the fingal ITS metagenomic. The mangrove ecosystem of Goa forms a very important bio-repository. Therefore, the ITS metagenomic DNA sequences obtained from Goa coastline will help to develop a gross idea about the fungal community members present in the mangrove sediments of North and South Goa. This is the first report of fungal metagenomic sequences for Mandovi & Zuari mangrove ecosystem obtained through illumina Miseq platform.

Method steps

Pipeline used: https://www.ebi.ac.uk/metagenomics/pipelines/4.1

Taxonomic Coverages

Geographic Coverages

Bibliographic Citations

Haldar S, Nazareth SW. 2019. Diversity of fungi from mangrove sediments of Goa, India, obtained by metagenomic analysis using Illumina sequencing. 3 Biotech vol. 9 - DOI:10.1007/s13205-019-1698-4

Contacts

originator
Goa University

metadata author
Goa University

administrative point of contact
Goa University