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Amplicon sequences from naphthalene biodegradation in Arctic and temperate seawater

Dataset homepage

Citation

MGnify (2019). Amplicon sequences from naphthalene biodegradation in Arctic and temperate seawater. Sampling event dataset https://doi.org/10.15468/cdci5z accessed via GBIF.org on 2021-01-17.

Description

Seawater samples from Arctic and temperate area were collected and used directly as inoculum for microcosm scale (1 L) biodegradation experiments. Two set of naphthalene biodegradation experiments were carried out at four different incubation temperatures (0.5, 4, 8, 15 C) with Arctic and temperate seawater. DNA was extracted and amplicon libraries were prepared from the two original seawater samples and one exposed sample at each incubation temperature.

Sampling Description

Sampling

Seawater samples from Arctic and temperate area were collected and used directly as inoculum for microcosm scale (1 L) biodegradation experiments. Two set of naphthalene biodegradation experiments were carried out at four different incubation temperatures (0.5, 4, 8, 15 C) with Arctic and temperate seawater. DNA was extracted and amplicon libraries were prepared from the two original seawater samples and one exposed sample at each incubation temperature.

Method steps

  1. Pipeline used: https://www.ebi.ac.uk/metagenomics/pipelines/4.1

Taxonomic Coverages

Geographic Coverages

Bibliographic Citations

Contacts

originator
University of Stavanger
metadata author
University of Stavanger
administrative point of contact
University of Stavanger
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