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Typotheca of the higher vascular plants stored in M.G. Popov Herbarium (NSK) at the Central Siberian botanical garden SB RAS

Dataset homepage

Citation

Kovtonyuk N, Han I, Ovchinnikova S, Nikiforova O, Vlasova N, Shekhovtsova I, Doron′kin V, Troshkina V, Pinzhenina E, Belyaeva I, Eremin I (2019). Typotheca of the higher vascular plants stored in M.G. Popov Herbarium (NSK) at the Central Siberian botanical garden SB RAS. Version 1.5. Central Siberian Botanical Garden SB RAS. Occurrence dataset https://doi.org/10.15468/qdfdqq accessed via GBIF.org on 2021-01-26.

Description

The herbaria at the Central Siberian Botanical Garden Siberian Branch of the Russian Academy of Sciences (CSBG) were started in 1946. There are two herbarium collections with their own codes and registrations in the Index Herbariorum: M.G.Popov Herbarium (NSK) and I.M.Krasnoborov Herbarium (NS). Approximately 800000 herbarium specimens of vascular plants, mosses, lichens and fungi collected in Siberia, the Russian Far East, Europe, Asia and North America are stored in NSK and NS. Digitization of the herbarium specimens of vascular plants at the resolution of 600 dpi began in 2014 using a special scanner, Herbscan, starting with type specimens. In 2017 a new research group Unique Scientific Unit – Herbarium (USU-Herbarium) was organized in the CSBG for the digitization and management of herbarium collections. Herbarium specimens are being digitized using three customized scanners: Herbscan and two ObjectScan 1600, according to the international standards, at 600 dpi, with a barcode, 24-color scale and spatial scale bar. Images and metadata are stored in the CSBG Database generated by ScanWizard Botany and MiVapp Botany software (Microtek, Taiwan).

We started creating the Typotheca since 2014 year by digitized type specimens and the protoloques. Typotheca - a collection of type specimen images and copies of pertaining protologues, as many protologues published in Russian have not been available in digital format (Kovtonyuk, Han, Gatilova, 2018b). Images and metadata for 568 type specimens preserved at the NSK are currently available on the Virtual Herbaria web site at the University of Vienna, Austria (http://herbarium.univie.ac.at/database) and 580 in JSTOR (https://plants.jstor.org). Here we published full checklist of type specimens

Purpose

We started creating the Typotheca since 2014 year by digitized type specimens and the protoloques. Typotheca - a collection of type specimen images and copies of pertaining protologues, as many protologues published in Russian have not been available in digital format.

Sampling Description

Study Extent

Type specimens were digitized since 2014 year.

Sampling

Currently digitization of samples is carried out using Herbscan and two ObjectScan 1600 scanners. Each workstation consists of an ObjectScan 1600 scanner, ScanWizard_Botany software (reg. number I41-018966) and MiVapp_Botany archive management system (reg. number I41-018969) software (Microtek, Taiwan).

Quality Control

Specimens were scanned using international standards: with the resolution of 600 dpi, a barcode for each specimen, and a 24-color scale and scale

Method steps

  1. Digitization have made by ObjectScan 1600.This integrated workstation is characterized by on-top scan design for full-frame focus, a maximum of 1600 dpi (equal to 1 Gigabyte pixels), color CCD, Optical Character Recognition (OCR) for specimen label and ID barcode, and image archive and privileged-account cloud management system. Verification of digitized images was made by I. Han and N. Kovtonyuk.

Additional info

Type specimens are kept in the CSBG SB RAS in designated cabinets for better preservation and control of handling.

Taxonomic Coverages

Type specimens from families Asteraceae (106), Poaceae (106), Fabaceae (94), Boraginaceae (80), Rosaceae (79), Ranunculaceae (48), Papaveraceae (47), Cyperaceae (44), Caryophyllaceae (40), Polygonaceae (23), Amaryllidaceae (22), Portulacaceae (22), Geraniaceae (14), Saxifragaceae (14), Brassicaceae (13), Juncaceae (12), Apiaceae (11), Primulaceae (11), Salicaceae (10), Euphorbiaceae (9), Violaceae (9), Orobanchaceae (9), Betulaceae (6), Gentianaceae (6), Lamiaceae (6), Amaranthaceae (4), Asparagaceae (4), Chenopodiaceae (3), Crassulaceae (3), Ericaceae (3), Grossulariaceae (2), Lentibulariaceae (2), Linaceae (2), Onagraceae (2), Tofieldiaceae (2), Caprifoliaceae (1), Iridaceae (1), Potamogetonaceae (1), Plantaginaceae (1).
  1. Asteraceae
    rank: family
  2. Poaceae
    rank: family
  3. Fabaceae
    rank: family
  4. Boraginaceae
    rank: family
  5. Rosaceae
    rank: family
  6. Ranunculaceae
    rank: family
  7. Papaveraceae
    rank: family
  8. Cyperaceae
    rank: family
  9. Caryophyllaceae
    rank: family
  10. Polygonaceae
    rank: family
  11. Amaryllidaceae
    rank: family
  12. Portulacaceae
    rank: family
  13. Geraniaceae
    rank: family
  14. Saxifragaceae
    rank: family
  15. Brassicaceae
    rank: family
  16. Juncaceae
    rank: family
  17. Apiaceae
    rank: family
  18. Primulaceae
    rank: family
  19. Salicaceae
    rank: family
  20. Euphorbiaceae
    rank: family
  21. Violaceae
    rank: family
  22. Betulaceae
    rank: family
  23. Gentianaceae
    rank: family
  24. Lamiaceae
    rank: family
  25. Scrophulariaceae
    rank: family
  26. Amaranthaceae
    rank: family
  27. Asparagaceae
    rank: family
  28. Orobanchaceae
    rank: family
  29. Chenopodiaceae
    rank: family
  30. Crassulaceae
    rank: family
  31. Ericaceae
    rank: family
  32. Grossulariaceae
    rank: family
  33. Lentibulariaceae
    rank: family
  34. Linaceae
    rank: family
  35. Onagraceae
    rank: family
  36. Tofieldiaceae
    rank: family
  37. Caprifoliaceae
    rank: family
  38. Iridaceae
    rank: family
  39. Potamogetonaceae
    rank: family

Geographic Coverages

Type specimens of higher vascular plants collected in Siberia, the Russian Far East, Europe, Asia.

Bibliographic Citations

  1. Buzunova I.O., Kovtonyuk N. K. 2010. Typical samples of Primula L. (Primulaceae) taxa from Siberia and the Russian Far East, kept in Herbarium of V. L. Komarov Institute of botany (LE) // Rastitel’niy mir Asiatskoy Rossii, 1: 12–18. -
  2. Kovtonyuk N.K. 2015. Virtual collection of type specimens in M.G. Popov Herbarium (NSK) // Rastitel’niy mir Asiatskoy Rossii, 3: 88-93. - http://www.izdatgeo.ru/pdf/rast/2015-3/88.pdf
  3. Kovtonyuk N.K., Belyaeva I.V. 2015. Nomenclatural and taxonomic notes on the names published by M.G. Popov in Salix L. and Populus L. (Salicaceae) // Skvortsovia, 2, 2: 126–140. - http://skvortsovia.uran.ru/2015/2203.pdf
  4. Elisafenko T.V., Ovchinnikova S.V. 2015. Lectotypification of Viola taynensis (Violaceae) // Rastitel’niy mir Asiatskoy Rossii, 4: 12–23. - http://www.izdatgeo.ru/pdf/rast/2015-4/12.pdf
  5. Han I.V. 2016. Taxa of Asteraceae, Euphorbiaceae and Scrophulariaceae in collection of types of M.G. Popov Herbarium (NSK) // Rastitel’niy mir Asiatskoy Rossii, 3: 41-54. - DOI: 10.21782/RMAR1995-2449-2016-3(41-54)
  6. Nikiforova O.D. 2016. The type specimens of the taxa of Hedysarum, Vicia, and Trifolium (Fabaceae) in collection of the M.G. Popov Herbarium (NSK) // Systematic notes, 113: 26–36. - DOI: 10.17223/20764103.113.2
  7. Nikiforova O.D. 2016. Type specimens of the taxa of the genus Papaver (Papaveraceae) in collections of M.G. Popov Herbarium (NSK) // Rastitel’niy mir Asiatskoy Rossii, 2: 14-20. - http://www.izdatgeo.ru/pdf/rast/2016-2/14.pdf
  8. Ovchinnikova S.V., Nikiforova O.D., Doron′kin, V.M., Vlasova N.V., Shekhovtsova I.N., Pinzhenina E.A. 2016. Type specimens of the taxa of Poaceae family in collection of M.G. Popov (NSK) // Rastitel’niy mir Asiatskoy Rossii, 1: 48 – 64. - http://www.izdatgeo.ru/pdf/rast/2016-1/48.pdf
  9. Troshkina V.I. 2016. Notes on systematic and chorology of Geranium pseudosibiricum and related species (Geraniaceae) // Rastitel’niy mir Asiatskoy Rossii, 3: 22-32. - DOI: 10.21782/RMAR1995-2449-2016-3(22-32)
  10. Vlasova N.V., Baikov K.S. 2016. Type specimens for taxa of the genus Dianthus (Caryophyllaceae) in the collection of M.G. Popov herbarium (NSK) // Rastitel’niy mir Asiatskoy Rossii, 3: 18–21. - DOI: 10.21782/RMAR1995-2449-2016-3(18-21)
  11. Kovtonyuk N.K. (2017) Typification Primula macrocalyx and P. maximowiczii (Primulaceae) // Rastitel’niy mir Asiatskoy Rossii, 4: 11-16. - DOI:10.21782/RMAR1995-2449-2017-4(11-16)
  12. Kovtonyuk N. 2017. Typification of names in Primula L. (Primulaceae), described by A.R. Franchet // Adansonia, 39, 2: 1-16. - DOI:10.5252/a2017n2a4 (29 Dec 2017)
  13. Kovtonyuk N.K. (2017) Virtual herbarium collections as a resource for taxonomy and biodiversity study // Rastitel’niy mir Asiatskoy Rossii, 1: 98-104. - DOI:10.21782/RMAR1995-2449-2017-4(11-16).
  14. Troshkina V.I. 2017. Systematics and chorology of Geranium albiflorum and related species (Geraniaceae) // Rastitel’niy mir Asiatskoy Rossii, 3: 22-33. - DOI:10.21782/RMAR1995-2449-2017-3(22-33)
  15. Kovtonyuk N.K., Han I.V., Gatilova E.A. 2018a Family Primulaceae in digital Herbarium of the Central Siberian Botanical garden SB RAS // Rastitel’niy mir Asiatskoy Rossii, 4: 19-29. - DOI: 10.21782/RMAR1995-2449-2018-4(19-29)
  16. Kovtonyuk N., Han I. and Gatilova E. 2018b Digitization of vascular plant herbarium collections at the Central Siberian Botanical Garden, Novosibirsk, Russia // Skvortsovia, 4 (3): 100 – 111. - http://skvortsovia.uran.ru/2018/4302.pdf
  17. Kovtonyuk N.K. 2018. Lectotypification of name Ranunculus taigaensis (Ranunculaceae) // Nov. Syst. Plant. Vasc. 48: 65 –67. - https://www.binran.ru/files/journals/Novitates/2017_48/NSPV-48_8-Kovtonyuk.pdf
  18. Ovchinnikova S.V., Shekhovtsova I.N., Pinzhenina E.A. 2018. Type specimens of the name of taxa of Rosaceae family in collection of the M.G. Popov Herbarium (NSK) // Rastitel’niy mir Asiatskoy Rossii, 2: 9–20. - DOI:10.21782/RMAR1995-2449-2018-2(9-20)
  19. Ovchinnikova S.V., Pinzhenina E.A. 2018. Type specimens of genera Astragalus and Oxytropis (Fabaceae) in collection of M.G. Popov Herbarium (NSK) // Rastitel’niy mir Asiatskoy Rossii, 4:37-50. - DOI: 10.21782/RMAR1995-2449-2018-4(37-50)
  20. Vlasova N.V. 2018. Type specimens of taxon names in genera Silene and Lichnis (Caryophyllaceae) in the collection of M.G. Popov Herbarium (NSK) // Rastitel’niy mir Asiatskoy Rossii 3 (23): 18–21. - DOI: doi||10.21782/RMAR1995-2449-2018-3(36-41)
  21. Shekhovtsova I.N. 2018. Type specimens of taxon names of the Cyperaceae family from the M.G. Popov herbarium (NSK) // Rastitel’niy mir Asiatskoy Rossii, 3: 42-52. - DOI: 10.21782/RMAR1995-2449-2018-3(42-52)
  22. Doronkin, V.M., Vlasova, N.V., Pinzhenina, E.A. 2019.Type specimens of the names of the families Betulaceae, Ranunculaceae, Asparagaceae and Tofieldiaceae taxa in collection of M. G. Popov Herbarium (NSK). Acta Biologica Sibirica, 5 (2): 23-29. - https://doi.org/10.14258/abs.v5.i2.5927
  23. Nikiforova O.D. 2019. Type specimens of the taxa family Polygonaceae in collections of M.G. Popov herbarium (NSK) // Rastitel’niy mir Asiatskoy Rossii, 1: 41-47. - DOI: 10.21782/RMAR1995-2449-2019-1(41-47)
  24. Kovtonyuk N., Andro-Durand V. (2019) Typification of Primula L. (Primulaceae), described by A. Franchet in 1886 from China and eastern Tibet // Adansonia, 41, 1. P. 75-89. - https://doi.org/10.5252/adansonia2019v41a9

Contacts

Nataliya Kovtonyuk
originator
position: Senior Researcher
Central Siberian Botanical Garden, SB RAS
Zolotodolinskaya St. 101
Novosibirsk
630090
Novosibirskaya oblast'
RU
Telephone: +79529365495
email: knat2008@yandex.ru
homepage: https://csbg-nsk.ru/kovtonyuk_nk
userId: http://orcid.org/0000-0002-4018-6634
Irina Han
originator
position: main engineer
Central Siberian Botanical Garden, SB RAS
Zolotodolinskaya St. 101
Novosibirsk
630090
Novosibirskaya oblast'
RU
email: irahan81@gmail.com
homepage: https://csbg-nsk.ru/unu_herbarium#rec92516349
userId: http://orcid.org/0000-0001-8385-5247
Svetlana Ovchinnikova
originator
position: Researcher
Central Siberian Botanical Garden, SB RAS
Zolotodolinskaya St. 101
Novosibirsk
Novosibirskaya oblast'
RU
homepage: https://csbg-nsk.ru/lab-systematics-and-florogenetics#rec103113309
userId: http://orcid.org/0000-0002-3876-954
Olga Nikiforova
originator
position: Researcher
Central Siberian Botanical Garden, SB RAS
Novosibirsk
RU
homepage: https://csbg-nsk.ru/lab-systematics-and-florogenetics#rec103113309
Natalia Vlasova
originator
Central Siberian Botanical Garden, SB RAS
Novosibirsk
RU
homepage: https://csbg-nsk.ru/lab-systematics-and-florogenetics#rec103113309
Irina Shekhovtsova
originator
Central Siberian Botanical Garden, SB RAS
Novosibirsk
RU
homepage: https://csbg-nsk.ru/lab-systematics-and-florogenetics#rec103113309
Vladimir Doron′kin
originator
position: researcher
Central Siberian Botanical Garden, SB RAS
Zolotodolinskaya, 101
Novosibirsk
630090
RU
email: norbo@ngs.ru
homepage: https://csbg-nsk.ru/lab-systematics-and-florogenetics#rec103113309
userId: http://orcid.org/0000-0001-6344-7588
Viktoria Troshkina
originator
position: researcher
Central Siberian Botanical Garden, SB RAS
Zolotodolinskaya, 101
Novosibirsk
630090
RU
email: vitroshkina@csbg.nsc.ru
homepage: https://csbg-nsk.ru/lab-systematics-and-florogenetics#rec103113309
userId: http://orcid.org/0000-0001-5762-4357
Ekaterina Pinzhenina
originator
position: researcher
Central Siberian Botanical Garden, SB RAS
Novosibirsk
RU
Irina Belyaeva
originator
position: researcher
Royal Botanical Gardens Kew
London
GB
Irina Han
metadata author
position: main engineer
Central Siberian Botanical Garden, SB RAS
Zolotodolinskaya St. 101
Novosibirsk
630090
Novosibirskaya oblast'
RU
email: irahan81@gmail.com
homepage: https://csbg-nsk.ru/unu_herbarium#rec92516349
userId: http://orcid.org/0000-0001-8385-5247
Ilya Eremin
metadata author
position: programmer
Central Siberian Botanical Garden, SB RAS
Novosibirsk
RU
Nataliya Kovtonyuk
author
position: Senior Researcher
Central Siberian Botanical Garden, SB RAS
Zolotodolinskaya St. 101
Novosibirsk
630090
Novosibirskaya oblast'
Telephone: +79529365495
email: knat2008@yandex.ru
homepage: https://csbg-nsk.ru/kovtonyuk_nk
userId: http://orcid.org/0000-0002-4018-6634
Nataliya Kovtonyuk
administrative point of contact
position: head of research group USU-Herbarium CSBG
Central Siberian Botanical Garden, SB RAS
Zolotodolinskaya St. 101
Novosibirsk
630090
RU
Telephone: +79529365495
email: knat2008@yandex.ru
homepage: https://csbg-nsk.ru/kovtonyuk_nk
userId: http://orcid.org/0000-0002-4018-6634
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