Vibrio-specific 16S rRNA sequences from seawater, sediment, and oyster hatchery samples

doi:10.15468/gxbetv

Vibrio-specific 16S rRNA sequences from seawater, sediment, and oyster hatchery samples

Citation

MGnify (2019). Vibrio-specific 16S rRNA sequences from seawater, sediment, and oyster hatchery samples. Sampling event dataset https://doi.org/10.15468/gxbetv accessed via GBIF.org on 2024-12-14.

Description

Vibrionaceae rRNA sequences from seawater, sediment, and oyster hatchery samples. Vibrio-specific 16S rRNA genes were amplified using VF169 and 680R primers (Yong et al. 2006, Thompson et al. 2004) and sequenced on the Illumina MiSeq.

Sampling Description

Sampling

Vibrionaceae rRNA sequences from seawater, sediment, and oyster hatchery samples. Vibrio-specific 16S rRNA genes were amplified using VF169 and 680R primers (Yong et al. 2006, Thompson et al. 2004) and sequenced on the Illumina MiSeq.

Method steps

Pipeline used: https://www.ebi.ac.uk/metagenomics/pipelines/4.1

Taxonomic Coverages

Geographic Coverages

Bibliographic Citations

Gradoville MR, Crump BC, Häse CC, White AE. 2018. Environmental Controls of Oyster-Pathogenic Vibrio spp. in Oregon Estuaries and a Shellfish Hatchery. Appl Environ Microbiol vol. 84 - DOI:10.1128/aem.02156-17

Contacts

originator
Oregon State University

metadata author
Oregon State University

administrative point of contact
Oregon State University