Vibrio-specific 16S rRNA sequences from seawater, sediment, and oyster hatchery samples
Citation
MGnify (2019). Vibrio-specific 16S rRNA sequences from seawater, sediment, and oyster hatchery samples. Sampling event dataset https://doi.org/10.15468/gxbetv accessed via GBIF.org on 2024-12-07.Description
Vibrionaceae rRNA sequences from seawater, sediment, and oyster hatchery samples. Vibrio-specific 16S rRNA genes were amplified using VF169 and 680R primers (Yong et al. 2006, Thompson et al. 2004) and sequenced on the Illumina MiSeq.Sampling Description
Sampling
Vibrionaceae rRNA sequences from seawater, sediment, and oyster hatchery samples. Vibrio-specific 16S rRNA genes were amplified using VF169 and 680R primers (Yong et al. 2006, Thompson et al. 2004) and sequenced on the Illumina MiSeq.Method steps
- Pipeline used: https://www.ebi.ac.uk/metagenomics/pipelines/4.1
Taxonomic Coverages
Geographic Coverages
Bibliographic Citations
- Gradoville MR, Crump BC, Häse CC, White AE. 2018. Environmental Controls of Oyster-Pathogenic Vibrio spp. in Oregon Estuaries and a Shellfish Hatchery. Appl Environ Microbiol vol. 84 - DOI:10.1128/aem.02156-17
Contacts
originatorOregon State University
metadata author
Oregon State University
administrative point of contact
Oregon State University