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Actualización de la Colección de Microorganismos de importancia acuática

Dataset homepage

Citation

Gómez Gil Rodríguez Sala B, Comisión nacional para el conocimiento y uso de la biodiversidad C (2023). Actualización de la Colección de Microorganismos de importancia acuática. Version 1.13. Comisión nacional para el conocimiento y uso de la biodiversidad. Occurrence dataset https://doi.org/10.15468/gk4rc4 accessed via GBIF.org on 2023-10-01.

Description

La colección CAIM ya gozó de un proyecto de computarización por parte de la CONABIO (CC007). Durante este proyecto se computarizó la Colección, pero varias de las cepas (261) quedaron incompletas en su identificación. De las 1813 cepas (registros) faltan por identificar 210 (11.6 %) y otros 51 sólo están a nivel de género; además se han adquirido varios nuevos ejemplares. Para poder llevar a cabo la actualización de la base de datos (BIOTICA), uno de los objetivos que no se pudo satisfacer plenamente en la propuesta anterior, es necesario identificar esas cepas. Para cumplir con este objetivo, en la presenta propuesta se realizarán secuenciaciones de genes útiles ("housekeeping") para poder llegar a una identificación correcta de las cepas bacterianas faltantes. Debido a que éstos genes ya se encuentran secuenciados y disponibles en bases de datos públicas (GenBank), los resultados que se ajusten con una similitud muy elevada (superior al 97-98% para el caso del 16S rARN, por ejemplo), será el criterio para identificar la cepa como perteneciente a esa especie. En caso de que el índice de similitud sea menor, se catalogará como potencial nueva especie y sujeta a posterior análisis. Con estos datos, se actualizará la base de datos para reflejar estas nuevas determinaciones y adicionar las bacterias que se han adquirido recientemente.

Reino: 1 Filo: 5 Clase: 5 Orden: 14 Familia: 23 Género: 39 Especie: 120 Epitetoinfraespecifico: 4

Taxonomic Coverages

Reino: Prokaryotae Filo: Proteobacteria, Firmicutes, Bacteroidetes, Tenericutes, Actinobacteria Clase: Gammaproteobacteria, Bacilli, Alphaproteobacteria, Flavobacteriia, No asignado Orden: Vibrionales, Alteromonadales, Bacillales, Lactobacillales, Pseudomonadales, Enterobacteriales, Aeromonadales, Rhizobiales, Oceanospirillales, Flavobacteriales, Caulobacterales, Entomoplasmatales, Rhodobacterales, Actinomycetales Familia: Vibrionaceae, Bacillaceae, Alteromonadaceae, Staphylococcaceae, Shewanellaceae, Streptococcaceae, Moraxellaceae, Enterobacteriaceae, No asignado, Enterococcaceae, Pseudoalteromonadaceae, Pseudomonadaceae, Aeromonadaceae, Brucellaceae, Oceanospirillaceae, Flavobacteriaceae, Halomonadaceae, Alcanivoracaceae, Caulobacteraceae, Micrococcaceae, Spiroplasmataceae, Rhodobacteraceae, Microbacteriaceae
  1. Prokaryotae
    rank: kingdom
  2. Proteobacteria
    rank: phylum
  3. Firmicutes
    rank: phylum
  4. Bacteroidetes
    rank: phylum
  5. Tenericutes
    rank: phylum
  6. Actinobacteria
    rank: phylum
  7. Gammaproteobacteria
    rank: class
  8. Bacilli
    rank: class
  9. Alphaproteobacteria
    rank: class
  10. Flavobacteriia
    rank: class
  11. No asignado
    rank: class
  12. Vibrionales
    rank: order
  13. Alteromonadales
    rank: order
  14. Bacillales
    rank: order
  15. Lactobacillales
    rank: order
  16. Pseudomonadales
    rank: order
  17. Enterobacteriales
    rank: order
  18. Aeromonadales
    rank: order
  19. Rhizobiales
    rank: order
  20. Oceanospirillales
    rank: order
  21. Flavobacteriales
    rank: order
  22. Caulobacterales
    rank: order
  23. Entomoplasmatales
    rank: order
  24. Rhodobacterales
    rank: order
  25. Actinomycetales
    rank: order
  26. Vibrionaceae
    rank: family
  27. Bacillaceae
    rank: family
  28. Alteromonadaceae
    rank: family
  29. Staphylococcaceae
    rank: family
  30. Shewanellaceae
    rank: family
  31. Streptococcaceae
    rank: family
  32. Moraxellaceae
    rank: family
  33. Enterobacteriaceae
    rank: family
  34. No asignado
    rank: family
  35. Enterococcaceae
    rank: family
  36. Pseudoalteromonadaceae
    rank: family
  37. Pseudomonadaceae
    rank: family
  38. Aeromonadaceae
    rank: family
  39. Brucellaceae
    rank: family
  40. Oceanospirillaceae
    rank: family
  41. Flavobacteriaceae
    rank: family
  42. Halomonadaceae
    rank: family
  43. Alcanivoracaceae
    rank: family
  44. Caulobacteraceae
    rank: family
  45. Micrococcaceae
    rank: family
  46. Spiroplasmataceae
    rank: family
  47. Rhodobacteraceae
    rank: family
  48. Microbacteriaceae
    rank: family
  49. Vibrio
    rank: genus
  50. Bacillus
    rank: genus
  51. Marinobacter
    rank: genus
  52. Photobacterium
    rank: genus
  53. Staphylococcus
    rank: genus
  54. Oceanobacillus
    rank: genus
  55. Shewanella
    rank: genus
  56. Streptococcus
    rank: genus
  57. Listonella
    rank: genus
  58. Psychrobacter
    rank: genus
  59. Escherichia
    rank: genus
  60. Exiguobacterium
    rank: genus
  61. Enterococcus
    rank: genus
  62. Alteromonas
    rank: genus
  63. Pseudoalteromonas
    rank: genus
  64. Pseudomonas
    rank: genus
  65. Grimontia
    rank: genus
  66. Aeromonas
    rank: genus
  67. Pantoea
    rank: genus
  68. Agarivorans
    rank: genus
  69. Ochrobactrum
    rank: genus
  70. Marinomonas
    rank: genus
  71. Acinetobacter
    rank: genus
  72. Tenacibaculum
    rank: genus
  73. Enterobacter
    rank: genus
  74. Halomonas
    rank: genus
  75. Aliivibrio
    rank: genus
  76. Alcanivorax
    rank: genus
  77. Brevundimonas
    rank: genus
  78. Vagococcus
    rank: genus
  79. Micrococcus
    rank: genus
  80. Spiroplasma
    rank: genus
  81. Yersinia
    rank: genus
  82. Enterovibrio
    rank: genus
  83. Roseobacter
    rank: genus
  84. Salmonella
    rank: genus
  85. Edwardsiella
    rank: genus
  86. Microbacterium
    rank: genus
  87. Salinivibrio
    rank: genus
  88. Vibrio fortis
    rank: species
  89. Vibrio alginolyticus
    rank: species
  90. Vibrio harveyi
    rank: species
  91. Bacillus safensis
    rank: species
  92. Vibrio parahaemolyticus
    rank: species
  93. Vibrio ponticus
    rank: species
  94. Vibrio campbellii
    rank: species
  95. Vibrio mediterranei
    rank: species
  96. Vibrio rotiferianus
    rank: species
  97. Staphylococcus saprophyticus
    rank: species
  98. Oceanobacillus sojae
    rank: species
  99. Vibrio chagasii
    rank: species
  100. Streptococcus iniae
    rank: species
  101. Vibrio owensii
    rank: species
  102. Vibrio crassostreae
    rank: species
  103. Photobacterium damselae
    rank: species
  104. Vibrio inusitatus
    rank: species
  105. Listonella pelagia
    rank: species
  106. Vibrio azureus
    rank: species
  107. Vibrio cyclitrophicus
    rank: species
  108. Vibrio coralliilyticus
    rank: species
  109. Vibrio brasiliensis
    rank: species
  110. Psychrobacter maritimus
    rank: species
  111. Shewanella baltica
    rank: species
  112. Vibrio communis
    rank: species
  113. Photobacterium leiognathi
    rank: species
  114. Bacillus tequilensis
    rank: species
  115. Vibrio orientalis
    rank: species
  116. Vibrio natriegens
    rank: species
  117. Bacillus aryabhattai
    rank: species
  118. Psychrobacter marincola
    rank: species
  119. Photobacterium swingsii
    rank: species
  120. Vibrio navarrensis
    rank: species
  121. Vibrio proteolyticus
    rank: species
  122. Vibrio splendidus
    rank: species
  123. Vibrio kanaloae
    rank: species
  124. Vibrio xuii
    rank: species
  125. Escherichia coli
    rank: species
  126. Vibrio ichthyoenteri
    rank: species
  127. Bacillus infantis
    rank: species
  128. Vibrio gigantis
    rank: species
  129. Vibrio tubiashii
    rank: species
  130. Shewanella xiamenensis
    rank: species
  131. Oceanobacillus profundus
    rank: species
  132. Exiguobacterium profundum
    rank: species
  133. Vibrio sinaloensis
    rank: species
  134. Staphylococcus gallinarum
    rank: species
  135. Enterococcus hirae
    rank: species
  136. Staphylococcus xylosus
    rank: species
  137. Staphylococcus sciuri
    rank: species
  138. Exiguobacterium mexicanum
    rank: species
  139. Bacillus thioparans
    rank: species
  140. Shewanella haliotis
    rank: species
  141. Vibrio rumoiensis
    rank: species
  142. Alteromonas macleodii
    rank: species
  143. Pseudoalteromonas spongiae
    rank: species
  144. Vibrio alfacsensis
    rank: species
  145. Photobacterium indicum
    rank: species
  146. Vibrio halioticoli
    rank: species
  147. Vibrio cholerae
    rank: species
  148. Pseudomonas beteli
    rank: species
  149. Vibrio artabrorum
    rank: species
  150. Vibrio vulnificus
    rank: species
  151. Grimontia hollisae
    rank: species
  152. Pseudomonas otitidis
    rank: species
  153. Vibrio hepatarius
    rank: species
  154. Vibrio neptunius
    rank: species
  155. Staphylococcus epidermidis
    rank: species
  156. Pseudomonas aeruginosa
    rank: species
  157. Aeromonas hydrophila
    rank: species
  158. Pantoea dispersa
    rank: species
  159. Vibrio mimicus
    rank: species
  160. Agarivorans albus
    rank: species
  161. Ochrobactrum lupini
    rank: species
  162. Vibrio nereis
    rank: species
  163. Marinomonas communis
    rank: species
  164. Vibrio fluvialis
    rank: species
  165. Vibrio ordalii
    rank: species
  166. Pseudomonas taiwanensis
    rank: species
  167. Staphylococcus arlettae
    rank: species
  168. Listonella anguillarum
    rank: species
  169. Acinetobacter baumannii
    rank: species
  170. Photobacterium lutimaris
    rank: species
  171. Aeromonas punctata
    rank: species
  172. Pseudoalteromonas piscicida
    rank: species
  173. Pseudoalteromonas prydzensis
    rank: species
  174. Tenacibaculum mesophilum
    rank: species
  175. Enterobacter cloacae
    rank: species
  176. Halomonas alimentaria
    rank: species
  177. Bacillus circulans
    rank: species
  178. Vibrio cincinnatiensis
    rank: species
  179. Shewanella loihica
    rank: species
  180. Aliivibrio fischeri
    rank: species
  181. Alcanivorax dieselolei
    rank: species
  182. Bacillus cereus
    rank: species
  183. Photobacterium gaetbulicola
    rank: species
  184. Photobacterium jeanii
    rank: species
  185. Acinetobacter schindleri
    rank: species
  186. Brevundimonas terrae
    rank: species
  187. Enterococcus gallinarum
    rank: species
  188. Vagococcus lutrae
    rank: species
  189. Micrococcus yunnanesis
    rank: species
  190. Vibrio diabolicus
    rank: species
  191. Aliivibrio logei
    rank: species
  192. Spiroplasma penaei
    rank: species
  193. Enterobacter hormaechei
    rank: species
  194. Yersinia enterocolitica
    rank: species
  195. Vibrio aestuarianus
    rank: species
  196. Enterovibrio nigricans
    rank: species
  197. Vibrio gazogenes
    rank: species
  198. Vibrio pomeroyi
    rank: species
  199. Vibrio rarus
    rank: species
  200. Enterovibrio norvegicus
    rank: species
  201. Edwardsiella tarda
    rank: species
  202. Aeromonas veronii
    rank: species
  203. Aeromonas jandaei
    rank: species
  204. Pseudomonas anguilliseptica
    rank: species
  205. Microbacterium paraoxydans
    rank: species
  206. Pseudomonas mosselii
    rank: species
  207. Photobacterium angustum
    rank: species
  208. Photobacterium damselae subsp. damselae
    rank: infraspecificname
  209. Aeromonas hydrophila subsp. hydrophila
    rank: infraspecificname
  210. Salmonella enterica subsp. enterica
    rank: infraspecificname
  211. Salinivibrio costicola subsp. vallismortis
    rank: infraspecificname

Geographic Coverages

País: País: ALEMANIA País: ARGENTINA (BUENOS AIRES) País: AUSTRALIA (NO DISPONIBLE, QUEENSLAND, TASMANIA, VICTORIA) País: BANGLADESH (DHAKA BIBHAG) País: BELGICA (FLEMISH) País: BRASIL (NO DISPONIBLE, SANTA CATARINA, SAO PAULO) País: CANADA País: CHILE País: CHINA (, SHANDONG, TAIWAN, ZHEJIANG) País: COLOMBIA País: COREA DEL SUR (, CHUNG-NAM, GYEONGGI, JEJUDO) País: DINAMARCA País: ECUADOR (GUAYAS) País: EGIPTO (SOUTH SINAI) País: ENGLAND País: ESPAÑA (, ANDALUCIA, CANARIAS, CATALUÑA, GALICIA, ILLES BALEARS, NAVARRA, VALENCIA, VALENCIANA) País: ESTADOS UNIDOS DE AMERICA (, CALIFORNIA, CONNECTICUT, FLORIDA, GEORGIA, HAWAII, MARYLAND, MASSACHUSETTS, NEW YORK, NORTH CAROLINA, OHIO, OREGON, SOUTH CAROLINA, TEXAS, VIRGINIA, WASHINGTON) País: FRANCIA (, AQUITAINE, BASSE-NORMANDIE, BRETAGNE, CORSICA, LIMOUSIN, LORRAINE, POITOU-CHARENTES) País: GRECIA País: GUATEMALA (RETALHULEU) País: GUERNSEY (VALE) País: HOLANDA (ZUID-HOLLAND) País: INDIA (TAMIL NADU) País: INDONESIA País: IRAN (FARS) País: ISRAEL (, MERIDIONAL) País: ITALIA (CAMPANIA) País: JAPON (, HOKKAIDO, IWATE, KAGOSHIMA, KANAGAWA, KOCHI, NAGASAKI, SIZUOKA, TOKYO) País: MEXICO (, BAJA CALIFORNIA, BAJA CALIFORNIA SUR, COLIMA, HIDALGO, NAYARIT, SINALOA, SONORA, VERACRUZ DE IGNACIO DE LA LLAVE) País: NEW CALEDONIA País: NORUEGA (, HORDALAND) País: NUEVA ZELANDA (WELLINGTON) País: PAPUA NUEVA GUINEA País: PHILIPINES País: PORTUGAL País: REINO UNIDO (GREATER LONDON, WALES) País: SCOTLAND (HIGHLAND) País: TAILANDIA (, BANGKOK) País: TANZANIA (ZANZIBAR) País: WALES

Bibliographic Citations

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  2. Chester, F. 1901. A Manual of Determinative Bacteriology. The MacMillan Co. New York. pp. 1-401. -
  3. Gamaleia, M. N. 1888. Vibrio metschnikovi (n. sp.) et ses rapports avec le microbe du choléra asiatique. Annales de l'Institut Pasteur. 2: 482-488. -
  4. Bannatyne, R. M. & Cheung, R. 1981. Ticarcillin bioassay. Antimicrobial Agents and Chemotherapy. 20: 493-495. -
  5. Yumoto, I., Iwata, H., Sawabe, T., Ueno, K., Ichise, H. & Matsuyama, H. 1999. Characterization of a facultatively psychrophilic bacterium, Vibrio rumoiensis sp. nov., that exhibits high catalase activity. Applied and Environmental Microbiology. 65: 67-72. -
  6. Castro, D., Luque, A., Santamaria, J. A., Maes, P., Martínez-Manzanares, E. & Borrego, J. 1995. Development of immunological techniques for the detection of the potential causative agent of the brown ring disease. Aquaculture. 132: 97-104. -
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  12. Baumann, P., Baumann, L., Bang, S. S. & Woolkalis, M. J. 1980. Reevaluation of the taxonomy of Vibrio, Beneckea, and Photobacterium: abolition of the genus Beneckea. Current Microbiology. 4: 127-132. -
  13. Schiewe, M. H. , Trust, T. & Crosa, J. H. 1981. Vibrio ordalii sp. nov. : A Causative agent of vibriosis in Fish. Current Microbiology. 6: 343-348. -
  14. Nogi, Y., Masui, N. & Kato, C. 1998. Photobacterium profundum sp. nov., a new, moderately barophilic bacterial species isolated from a deep-sea sediment. Extremophiles: life under extreme conditions. 2: 1-7. -
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  17. Toranzo, A. E., Barja, J. L., Potter, S. A., Colwell, R. R. & Hetrick, F. M. 1983. Molecular factors associated with virulence of marine vibrios isolated from striped bass in Chesapeake Bay. Infection and Immunity. 39: 1220-1227. -
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  19. Skerman, V. B. D., McGowan, V. & Sneath, P. H. A. 1980. Approved lists of bacterial names. International Journal of Systematic Bacteriology. 30: 225-420. -
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  21. Smith, S. K., Sutton, D. C., Fuerst, J. A. & Reichelt, J. L. 1991. Evaluation of the genus Listonella and reassignment of Listonella damsela (Love et al.) MacDonell and Colwell to the genus Photobacterium as Photobacterium damsela comb. nov. with an emended description. International Journal of Systematic Bacteriology. 41: 529-534. -
  22. West, P. A. 1986. Numerical taxonomy of vibrios isolated from aquatic environments. International Journal of Systematic Bacteriology. 36: 531-543. -
  23. Pujalte, M. & Garay, E. 1986. Proposal of Vibrio mediterranei sp. nov.: A new Marine Member of the Genus Vibrio. International Journal of Systematic Bacteriology. 36: 278-281. -
  24. Hendrie, M. S. 1971. Proposal that the species Vibrio anguillarum Bergman 1909, Vibrio piscium David 1927, and Vibrio ichtyodermis (Wells and ZoBell) Shewan, Hobbs, and Hodgkiss 1960 be combined as a single species, Vibrio anguillarum. International Journal of Systematic Bacteriology. 21: 64-68. -
  25. Urakawa, H., Kita-Tsukamoto, K. & Ohwada, R. R. 1999. Reassessment of the taxonomic position of Vibrio iliopiscarius (Onarheim et al. 1994) and proposal for Photobacterium iliopiscarium comb. nov. International Journal of Systematic Bacteriology. 49(1): 257-260. -
  26. Farmer III, J. J. 1980. Revival of the name Vibrio vulnificus. International Journal of Systematic Bacteriology. 30: 656. -
  27. Truper, H. G. & De Clari, L. 1997. Taxonomic note: Necessary correction of specific epithets formed as substantives (nouns) "in apposition". International Journal of Systematic Bacteriology. 47: 908-909. -
  28. García, M. T., Ventosa, A., Ruiz-Berraquero, F. & Kocur, M. 1987. Taxonomic study and amended description of Vibrio costicola. International Journal of Systematic Bacteriology. 37: 251-256. -
  29. Bouvet, P. J. & Grimont, P. A. 1986. Taxonomy of the genus Acinetobacter with the recongnition of Acinetobacter baumanii sp. nov., Acinetobacter haemolyticus sp. nov., Acinetobacter johnsonii sp. nov., and Acinetobacter junii sp. nov. and emended descriptions of Acinetobacter calcoaceticus. International Journal of Systematic Bacteriology. 36: 288-240. -
  30. ND. 1983. Validation list no. 11. International Journal of Systematic Bacteriology. 33: 672-674. -
  31. ND. 1984. Validation list no. 13. International Journal of Systematic Bacteriology. 34: 91-92. -
  32. ND. 1986. Validation list no. 20. International Journal of Systematic Bacteriology. 36: 354-356. -
  33. ND. 1995. Validation list no. 53. International Journal of Systematic Bacteriology. 45: 370-379. -
  34. ND. 1981. Validation list no. 6. International Journal of Systematic Bacteriology. 31: 215-218. -
  35. ND. 1982. Validation list no. 8. International Journal of Systematic Bacteriology. 32: 266-268. -
  36. ND. 1982. Validation list no. 9. International Journal of Systematic Bacteriology. 32: 384-385. -
  37. Tison, D. L. & Seidler, R. J. 1983. Vibrio aestuarianus: a new species from estuarine waters and shellfish. International Journal of Systematic Bacteriology. 33: 699-702. -
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