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Actualización de la Colección de Microorganismos de importancia acuática

Dataset homepage

Citation

Gómez Gil Rodríguez Sala B, Comisión nacional para el conocimiento y uso de la biodiversidad C (2018). Actualización de la Colección de Microorganismos de importancia acuática. Version 1.5. Comisión nacional para el conocimiento y uso de la biodiversidad. Occurrence dataset https://doi.org/10.15468/gk4rc4 accessed via GBIF.org on 2018-10-20.

Description

La colección CAIM ya gozó de un proyecto de computarización por parte de la CONABIO (CC007). Durante este proyecto se computarizó la Colección, pero varias de las cepas (261) quedaron incompletas en su identificación. De las 1813 cepas (registros) faltan por identificar 210 (11.6 %) y otros 51 sólo están a nivel de género; además se han adquirido varios nuevos ejemplares. Para poder llevar a cabo la actualización de la base de datos (BIOTICA), uno de los objetivos que no se pudo satisfacer plenamente en la propuesta anterior, es necesario identificar esas cepas. Para cumplir con este objetivo, en la presenta propuesta se realizarán secuenciaciones de genes útiles (“housekeeping”) para poder llegar a una identificación correcta de las cepas bacterianas faltantes. Debido a que éstos genes ya se encuentran secuenciados y disponibles en bases de datos públicas (GenBank), los resultados que se ajusten con una similitud muy elevada (superior al 97-98% para el caso del 16S rARN, por ejemplo), será el criterio para identificar la cepa como perteneciente a esa especie. En caso de que el índice de similitud sea menor, se catalogará como potencial nueva especie y sujeta a posterior análisis. Con estos datos, se actualizará la base de datos para reflejar estas nuevas determinaciones y adicionar las bacterias que se han adquirido recientemente.

Reino: 1 Filo: 4 Clase: 6 Orden: 13 Familia: 26 Género: 43 Especie: 183 Epitetoinfraespecifico: 7

Taxonomic Coverages

Reino: Prokaryotae Filo: Proteobacteria, Actinobacteria, Firmicutes, Bacteroidetes Clase: Gammaproteobacteria, Actinobacteria, Bacilli, Mollicutes, Alphaproteobacteria, Flavobacteria Orden: Vibrionales, Enterobacteriales, Pseudomonadales, Alteromonadales, Actinomycetales, Lactobacillales, Bacillales, Aeromonadales, Oceanospirillales, Entomoplasmatales, Rhodobacterales, Flavobacteriales, Rhizobiales Familia: Vibrionaceae, Enterobacteriaceae, Pseudomonadaceae, Pseudoalteromonadaceae, Propionibacteriaceae, Shewanellaceae, Streptococcaceae, Moraxellaceae, Enterococcaceae, Bacillaceae, Aeromonadaceae, Staphylococcaceae, Planococcaceae, Caulobacteraceae, Alteromonadaceae, NO DISPONIBLE, Alcanivoracaceae, Not assigned, Spiroplasmataceae, Oceanospirillaceae, Rhodobacteraceae, Flavobacteriaceae, Micrococcaceae, Halomonadaceae, Brucellaceae, Microbacteriaceae
  1. Prokaryotae
    rank: kingdom
  2. Proteobacteria
    rank: phylum
  3. Actinobacteria
    rank: phylum
  4. Firmicutes
    rank: phylum
  5. Bacteroidetes
    rank: phylum
  6. Gammaproteobacteria
    rank: class
  7. Actinobacteria
    rank: class
  8. Bacilli
    rank: class
  9. Mollicutes
    rank: class
  10. Alphaproteobacteria
    rank: class
  11. Flavobacteria
    rank: class
  12. Vibrionales
    rank: order
  13. Enterobacteriales
    rank: order
  14. Pseudomonadales
    rank: order
  15. Alteromonadales
    rank: order
  16. Actinomycetales
    rank: order
  17. Lactobacillales
    rank: order
  18. Bacillales
    rank: order
  19. Aeromonadales
    rank: order
  20. Oceanospirillales
    rank: order
  21. Entomoplasmatales
    rank: order
  22. Rhodobacterales
    rank: order
  23. Flavobacteriales
    rank: order
  24. Rhizobiales
    rank: order
  25. Vibrionaceae
    rank: family
  26. Enterobacteriaceae
    rank: family
  27. Pseudomonadaceae
    rank: family
  28. Pseudoalteromonadaceae
    rank: family
  29. Propionibacteriaceae
    rank: family
  30. Shewanellaceae
    rank: family
  31. Streptococcaceae
    rank: family
  32. Moraxellaceae
    rank: family
  33. Enterococcaceae
    rank: family
  34. Bacillaceae
    rank: family
  35. Aeromonadaceae
    rank: family
  36. Staphylococcaceae
    rank: family
  37. Planococcaceae
    rank: family
  38. Caulobacteraceae
    rank: family
  39. Alteromonadaceae
    rank: family
  40. NO DISPONIBLE
    rank: family
  41. Alcanivoracaceae
    rank: family
  42. Not assigned
    rank: family
  43. Spiroplasmataceae
    rank: family
  44. Oceanospirillaceae
    rank: family
  45. Rhodobacteraceae
    rank: family
  46. Flavobacteriaceae
    rank: family
  47. Micrococcaceae
    rank: family
  48. Halomonadaceae
    rank: family
  49. Brucellaceae
    rank: family
  50. Microbacteriaceae
    rank: family
  51. Vibrio
    rank: genus
  52. Salinivibrio
    rank: genus
  53. Pantoea
    rank: genus
  54. Pseudomonas
    rank: genus
  55. Pseudoalteromonas
    rank: genus
  56. Edwardsiella
    rank: genus
  57. Tessaracoccus
    rank: genus
  58. Shewanella
    rank: genus
  59. Salmonella
    rank: genus
  60. Streptococcus
    rank: genus
  61. Photobacterium
    rank: genus
  62. Enterovibrio
    rank: genus
  63. Psychrobacter
    rank: genus
  64. Aliivibrio
    rank: genus
  65. Enterobacter
    rank: genus
  66. Escherichia
    rank: genus
  67. Enterococcus
    rank: genus
  68. Bacillus
    rank: genus
  69. Acinetobacter
    rank: genus
  70. Grimontia
    rank: genus
  71. Aeromonas
    rank: genus
  72. Staphylococcus
    rank: genus
  73. Planomicrobium
    rank: genus
  74. Brevundimonas
    rank: genus
  75. Listonella
    rank: genus
  76. Alteromonas
    rank: genus
  77. NO DISPONIBLE
    rank: genus
  78. Alcanivorax
    rank: genus
  79. Agarivorans
    rank: genus
  80. Oceanobacillus
    rank: genus
  81. Spiroplasma
    rank: genus
  82. Marinomonas
    rank: genus
  83. Yersinia
    rank: genus
  84. Marinobacterium
    rank: genus
  85. Roseobacter
    rank: genus
  86. Tenacibaculum
    rank: genus
  87. Marinobacter
    rank: genus
  88. Exiguobacterium
    rank: genus
  89. Micrococcus
    rank: genus
  90. Vagococcus
    rank: genus
  91. Halomonas
    rank: genus
  92. Ochrobactrum
    rank: genus
  93. Microbacterium
    rank: genus
  94. Vibrio orientalis
    rank: species
  95. Vibrio inusitatus
    rank: species
  96. Vibrio vulnificus
    rank: species
  97. Vibrio fortis
    rank: species
  98. Vibrio halioticoli
    rank: species
  99. Pantoea dispersa
    rank: species
  100. Pseudomonas anguilliseptica
    rank: species
  101. Vibrio parahaemolyticus
    rank: species
  102. Pseudoalteromonas piscicida
    rank: species
  103. Edwardsiella tarda
    rank: species
  104. Vibrio ichthyoenteri
    rank: species
  105. Vibrio ponticus
    rank: species
  106. Pseudomonas mosselii
    rank: species
  107. Shewanella loihica
    rank: species
  108. Vibrio hippocampi
    rank: species
  109. Pseudomonas otitidis
    rank: species
  110. Vibrio harveyi
    rank: species
  111. Vibrio rarus
    rank: species
  112. Pseudomonas aeruginosa
    rank: species
  113. Vibrio comitans
    rank: species
  114. Vibrio navarrensis
    rank: species
  115. Vibrio tubiashii
    rank: species
  116. Vibrio marinus
    rank: species
  117. Streptococcus iniae
    rank: species
  118. Vibrio agarivorans
    rank: species
  119. Photobacterium sanguinicancer
    rank: species
  120. Vibrio superstes
    rank: species
  121. Vibrio tapetis
    rank: species
  122. Enterovibrio nigricans
    rank: species
  123. Vibrio neonatus
    rank: species
  124. Psychrobacter marincola
    rank: species
  125. Vibrio tasmaniensis
    rank: species
  126. Photobacterium aquimaris
    rank: species
  127. Pseudomonas beteli
    rank: species
  128. Aliivibrio logei
    rank: species
  129. Enterobacter hormaechei
    rank: species
  130. Escherichia coli
    rank: species
  131. Vibrio natriegens
    rank: species
  132. Enterococcus gallinarum
    rank: species
  133. Photobacterium profundum
    rank: species
  134. Bacillus circulans
    rank: species
  135. Vibrio nigripulchritudo
    rank: species
  136. Vibrio owensii
    rank: species
  137. Vibrio pectenicida
    rank: species
  138. Vibrio aestuarianus
    rank: species
  139. Vibrio pacinii
    rank: species
  140. Vibrio brasiliensis
    rank: species
  141. Pseudomonas taiwanensis
    rank: species
  142. Photobacterium jeanii
    rank: species
  143. Vibrio porteresiae
    rank: species
  144. Vibrio splendidus
    rank: species
  145. Acinetobacter baumannii
    rank: species
  146. Vibrio ordalii
    rank: species
  147. Vibrio mimicus
    rank: species
  148. Grimontia hollisae
    rank: species
  149. Vibrio campbellii
    rank: species
  150. Vibrio furnissii
    rank: species
  151. Vibrio kanaloae
    rank: species
  152. Vibrio casei
    rank: species
  153. Aeromonas veronii
    rank: species
  154. Enterococcus hirae
    rank: species
  155. Enterovibrio coralii
    rank: species
  156. Vibrio mytili
    rank: species
  157. Shewanella baltica
    rank: species
  158. Photobacterium indicum
    rank: species
  159. Vibrio proteolyticus
    rank: species
  160. Enterovibrio calviensis
    rank: species
  161. Aliivibrio salmonicida
    rank: species
  162. Photobacterium rosenbergii
    rank: species
  163. Acinetobacter schindleri
    rank: species
  164. Vibrio alginolyticus
    rank: species
  165. Vibrio rhizosphaerae
    rank: species
  166. Vibrio gazogenes
    rank: species
  167. Photobacterium damselae
    rank: species
  168. Photobacterium swingsii
    rank: species
  169. Vibrio atlanticus
    rank: species
  170. Vibrio mediterranei
    rank: species
  171. Aeromonas jandaei
    rank: species
  172. Vibrio metschnikovii
    rank: species
  173. Photobacterium frigidiphilum
    rank: species
  174. Vibrio nereis
    rank: species
  175. Vibrio cholerae
    rank: species
  176. Staphylococcus sciuri
    rank: species
  177. Planomicrobium okeanokoites
    rank: species
  178. Pseudoalteromonas spongiae
    rank: species
  179. Vibrio coralliilyticus
    rank: species
  180. Vibrio hangzhouensis
    rank: species
  181. Brevundimonas terrae
    rank: species
  182. Listonella pelagia
    rank: species
  183. Pseudoalteromonas prydzensis
    rank: species
  184. Aeromonas hydrophila
    rank: species
  185. Shewanella xiamenensis
    rank: species
  186. Photobacterium aplysiae
    rank: species
  187. Listonella anguillarum
    rank: species
  188. Alcanivorax dieselolei
    rank: species
  189. Photobacterium ganghwense
    rank: species
  190. Vibrio gigantis
    rank: species
  191. Bacillus infantis
    rank: species
  192. Agarivorans albus
    rank: species
  193. Salinivibrio proteolyticus
    rank: species
  194. Oceanobacillus sojae
    rank: species
  195. Spiroplasma penaei
    rank: species
  196. Vibrio crassostreae
    rank: species
  197. Vibrio sinaloensis
    rank: species
  198. Vibrio rotiferianus
    rank: species
  199. Aliivibrio finisterrensis
    rank: species
  200. Photobacterium leiognathi
    rank: species
  201. Photobacterium iliopiscarium
    rank: species
  202. Vibrio chagasii
    rank: species
  203. Marinomonas communis
    rank: species
  204. Vibrio plantisponsor
    rank: species
  205. Photobacterium phosphoreum
    rank: species
  206. Vibrio jasicida
    rank: species
  207. Vibrio cincinnatiensis
    rank: species
  208. Yersinia enterocolitica
    rank: species
  209. Vibrio hispanicus
    rank: species
  210. Psychrobacter submarinus
    rank: species
  211. Bacillus safensis
    rank: species
  212. Vibrio xuii
    rank: species
  213. Vibrio pomeroyi
    rank: species
  214. Marinobacterium coralii
    rank: species
  215. Vibrio litoralis
    rank: species
  216. Shewanella haliotis
    rank: species
  217. Vibrio variabilis
    rank: species
  218. Tenacibaculum mesophilum
    rank: species
  219. Vibrio azureus
    rank: species
  220. Vibrio aerogenes
    rank: species
  221. Photobacterium gaetbulicola
    rank: species
  222. Vibrio neptunius
    rank: species
  223. Vibrio celticus
    rank: species
  224. Vibrio fluvialis
    rank: species
  225. Photobacterium kishitanii
    rank: species
  226. Oceanobacillus profundus
    rank: species
  227. Vibrio ezurae
    rank: species
  228. Aliivibrio fischeri
    rank: species
  229. Exiguobacterium mexicanum
    rank: species
  230. Bacillus tequilensis
    rank: species
  231. Vibrio gallicus
    rank: species
  232. Vibrio scophthalmi
    rank: species
  233. Vibrio rumoiensis
    rank: species
  234. Vibrio diazotrophicus
    rank: species
  235. Vibrio diabolicus
    rank: species
  236. Photobacterium halotolerans
    rank: species
  237. Micrococcus yunnanesis
    rank: species
  238. Staphylococcus gallinarum
    rank: species
  239. Enterobacter cloacae
    rank: species
  240. Vibrio breoganii
    rank: species
  241. Alteromonas macleodii
    rank: species
  242. Vibrio lentus
    rank: species
  243. Bacillus thioparans
    rank: species
  244. Vibrio alfacsensis
    rank: species
  245. Enterovibrio norvegicus
    rank: species
  246. Vagococcus lutrae
    rank: species
  247. Vibrio penaeicida
    rank: species
  248. Vibrio ruber
    rank: species
  249. Halomonas alimentaria
    rank: species
  250. Photobacterium lipolyticum
    rank: species
  251. Vibrio hepatarius
    rank: species
  252. Staphylococcus epidermidis
    rank: species
  253. Vibrio maja
    rank: species
  254. Vibrio artabrorum
    rank: species
  255. Staphylococcus xylosus
    rank: species
  256. Vibrio sagamiensis
    rank: species
  257. Aeromonas salmonicida
    rank: species
  258. Acinetobacter calcoaceticus
    rank: species
  259. Vibrio areninigrae
    rank: species
  260. Ochrobactrum lupini
    rank: species
  261. Vibrio communis
    rank: species
  262. Photobacterium angustum
    rank: species
  263. Vibrio gallaecicus
    rank: species
  264. Aeromonas punctata
    rank: species
  265. Bacillus cereus
    rank: species
  266. Exiguobacterium profundum
    rank: species
  267. Psychrobacter maritimus
    rank: species
  268. Bacillus aryabhattai
    rank: species
  269. Photobacterium aphoticum
    rank: species
  270. Vibrio mangrovi
    rank: species
  271. Photobacterium lutimaris
    rank: species
  272. Staphylococcus arlettae
    rank: species
  273. Staphylococcus saprophyticus
    rank: species
  274. Vibrio cyclitrophicus
    rank: species
  275. Microbacterium paraoxydans
    rank: species
  276. Marinomonas brasilensis
    rank: species
  277. Salinivibrio costicola subsp. costicola
    rank: infraspecificname
  278. Salmonella enterica subsp. enterica
    rank: infraspecificname
  279. Aeromonas salmonicida subsp. salmonicida
    rank: infraspecificname
  280. Photobacterium damselae subsp. damselae
    rank: infraspecificname
  281. Salinivibrio costicola subsp. alcaliphilus
    rank: infraspecificname
  282. Aeromonas hydrophila subsp. hydrophila
    rank: infraspecificname
  283. Salinivibrio costicola subsp. vallismortis
    rank: infraspecificname

Geographic Coverages

País: ALEMANIA País: ARGENTINA (BUENOS AIRES) País: AUSTRALIA (NO DISPONIBLE, QUEENSLAND, TASMANIA, VICTORIA) País: BANGLADESH (DHAKA BIBHAG) País: BELGICA (FLEMISH) País: BRASIL (NO DISPONIBLE, SANTA CATARINA, SAO PAULO) País: CANADA País: CHILE País: CHINA (SHANDONG, TAIWAN, ZHEJIANG) País: COLOMBIA País: COREA DEL SUR (CHUNG-NAM, GYEONGGI, JEJUDO) País: DINAMARCA País: ECUADOR (GUAYAS) País: EGIPTO (SOUTH SINAI) País: ENGLAND País: ESPAÑA (ANDALUCIA, CANARIAS, CATALUÑA, GALICIA, ILLES BALEARS, NAVARRA, VALENCIA, VALENCIANA) País: ESTADOS UNIDOS DE AMERICA (CALIFORNIA, CONNECTICUT, FLORIDA, GEORGIA, HAWAII, MARYLAND, MASSACHUSETTS, NEW YORK, NO DISPONIBLE, NORTH CAROLINA, OHIO, OREGON, SOUTH CAROLINA, TEXAS, VIRGINIA, WASHINGTON) País: FRANCIA (AQUITAINE, BASSE-NORMANDIE, BRETAGNE, CORSICA, LIMOUSIN, LORRAINE, POITOU-CHARENTES) País: GRECIA País: GUATEMALA (SUROCCIDENTAL) País: GUERNSEY (VALE) País: HOLANDA (ZUID-HOLLAND) País: INDIA (TAMIL NADU) País: INDONESIA País: IRAN (FARS) País: ISRAEL (MERIDIONAL) País: ITALIA (CAMPANIA) País: JAPON (HOKKAIDO, IWATE, KAGOSHIMA, KANAGAWA, KOCHI, NAGASAKI, SIZUOKA, TOKYO) País: MEXICO (BAJA CALIFORNIA, BAJA CALIFORNIA SUR, COLIMA, HIDALGO, NAYARIT, SINALOA, SONORA, VERACRUZ DE IGNACIO DE LA LLAVE) País: NEW CALEDONIA País: NORUEGA (HORDALAND) País: NUEVA ZELANDA (WELLINGTON) País: PAPUA NUEVA GUINEA País: PHILIPINES País: PORTUGAL País: REINO UNIDO (GREATER LONDON, WALES) País: SCOTLAND (HIGHLAND) País: TAILANDIA (BANGKOK) País: TANZANIA (ZANZIBAR) País: WALES

Bibliographic Citations

Contacts

Bruno Gómez Gil Rodríguez Sala
originator
position: Responsable
Centro de Investigación en Alimentación y Desarrollo ACCoordinación de Acuicultura y Manejo Ambiental (Mazatlán, Sinaloa)
Mazatlán
82010
Sinaloa
MX
Telephone: Tel 01(669) 989 8700 xt 245 o 221
email: bruno@ciad.mx
CONABIO Comisión nacional para el conocimiento y uso de la biodiversidad
metadata author
position: Dirección General de Sistemas
Comisión Nacional para el Conocimiento y Uso de la Biodiversidad
Liga Periférico-Insurgentes Sur No. 4903, Col. Parques del Pedregal
MÉXICO
14010
Tlalpan
MX
Telephone: 50045000
email: patricia.ramos@conabio.gob.mx
homepage: https://www.gob.mx/conabio
Sonia Alejandra Careaga Olvera
administrative point of contact
position: Subcoordinadora en Información y Análisis
Comisión Nacional para el Conocimiento y Uso de la Biodiversidad
Liga Periférico-Insurgentes Sur No. 4903, Col. Parques del Pedregal
México
14010
Tlalpan
MX
Telephone: 50045000
email: scareaga@conabio.gob.mx
homepage: https://www.gob.mx/conabio
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