Amplicon sequencing of Tara Oceans DNA samples corresponding to size fractions for  large DNA viruses.

doi:10.15468/p2sjj2

Amplicon sequencing of Tara Oceans DNA samples corresponding to size fractions for large DNA viruses.

Citation

MGnify (2020). Amplicon sequencing of Tara Oceans DNA samples corresponding to size fractions for large DNA viruses.. Sampling event dataset https://doi.org/10.15468/p2sjj2 accessed via GBIF.org on 2023-09-27.

Description

Seawater was filtered from different depths to retain small cell sizes (Girus Organisms). The DNA was extracted and amplified by PCR.

Sampling Description

Sampling

Seawater was filtered from different depths to retain small cell sizes (Girus Organisms). The DNA was extracted and amplified by PCR.

Method steps

Pipeline used: https://www.ebi.ac.uk/metagenomics/pipelines/5.0

Taxonomic Coverages

Geographic Coverages

Bibliographic Citations

Cuadrat RRC, Sorokina M, Andrade BG, Goris T, Dávila AMR. 2020. Global ocean resistome revealed: Exploring antibiotic resistance gene abundance and distribution in TARA Oceans samples. Gigascience vol. 9 - DOI:10.1093/gigascience/giaa046

Contacts

originator
The French National Sequencing Center (Genoscope)
Le Ponant Building D - 25 rue Leblanc
PARIS - RCS B 775 685 019
75015
FR
Telephone: +33 (0) 1 64 50 20 59

metadata author
The French National Sequencing Center (Genoscope)
Le Ponant Building D - 25 rue Leblanc
PARIS - RCS B 775 685 019
75015
FR
Telephone: +33 (0) 1 64 50 20 59

administrative point of contact
The French National Sequencing Center (Genoscope)
Le Ponant Building D - 25 rue Leblanc
PARIS - RCS B 775 685 019
75015
FR
Telephone: +33 (0) 1 64 50 20 59