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Mapping the wild ectomycorrhizal fungi of Meise Botanic Garden from 2006 to 2012

Citation

Meise Botanic Garden, Huybrechts P, Van der Beeten I, Van de Kerckhove O (2021). Mapping the wild ectomycorrhizal fungi of Meise Botanic Garden from 2006 to 2012. Version 1.6. Meise Botanic Garden. Occurrence dataset https://doi.org/10.15468/tewbkf accessed via GBIF.org on 2022-05-26.

Description

Between 2006 and 2012 the ectomycorrhizal Fungi of Meise Botanic Garden were surveyed by monitoring species rich sites. By recording the precise location of the fruiting bodies we also aimed to infer the extent of their subterranean mycelia. Surveys were repeated on the same sites over time to facilitate monitoring of changes in species composition within and between sites.

Sampling Description

Study Extent

Starting from 2006 and up to 2012 the fungal communities of Meise Botanic Garden were surveyed by taking inventory of the most species rich sites within the domain. Some sites were added to the survey when interesting observational opportunities presented themselves. A dataset containing these sites was published separately (https://doi.org/10.5281/zenodo.4778742)

Sampling

Fruiting bodies were mapped between June and the beginning of November over several years. Due to time constraints, not all fruiting bodies were mapped when they were very abundant.

Method steps

  1. Sites were surveyed opportunistically between June and the beginning of November each year. When fruiting bodies were particularly abundant a subset of individuals were mapped to represent the larger colony.
  2. Fungi observed were hand drawn onto accurate template scale maps (1:100) using fixed landmarks, such as trees, lamp posts, benches and paths. A tape measure was used to locate the fruiting bodies accurately from these locations.
  3. These maps were photographed using a medium format digital SLR camera (Pentax 645Z with Pentax FA-645 45-85mm lens at f/7.1) and imported into QGIS as separate layers.
  4. Before map project transformation all maps using the same template were digitally aligned to avoid the shifting of common features. This allows for common parameters to be used when transforming maps that are based on the same template.
  5. Each map was transformed to Web Mercator projection (EPSG:3857) by using these known ground reference points of which GPS coordinates were already stored in an internal GIS database (QGIS 3.14.15-Pi, GDAL/OGR 3.0.4). In some cases known additional points could be constructed from the drawn maps when drawn features had distances noted from known or projected reference points. Spatial information was added to the TIFF metadata according to the GeoTIFF standard. The algorithms employed were Helmert/Linear transformation when few control points were available, and Thin Plate Spline when more points were available.
  6. Each fruiting body marked on a map was added as a point feature in a shapefile layer using the QGIS digitizing tools.
  7. Coordinate uncertainty was determined by comparing the given distance measurements on the maps to the distances returned by the measuring tool in QGIS.
  8. The resulting spatial data were exported from QGIS and transformed into Darwin Core and are presented in this dataset. Coordinates were transformed to World Geodetic System 84 (EPSG:4326) to facilitate reusability.

Taxonomic Coverages

ectomycorrhizal Fungi of Meise Botanic Garden
  1. Russula melliolens f. atropurpurea Singer
    rank: form
  2. Amanita Dill. ex Boehm.
    rank: genus
  3. Armillaria (Fr.) Staude
    rank: genus
  4. Clitocybe (Fr.) Staude
    rank: genus
  5. Cortinarius (Pers.) Gray
    rank: genus
  6. Hebeloma (Fr.) P.Kumm.
    rank: genus
  7. Inocybe (Fr.) Fr.
    rank: genus
  8. Lactarius Pers.
    rank: genus
  9. Psathyrella (Fr.) Quél.
    rank: genus
  10. Russula Pers.
    rank: genus
  11. Amanita aspera (Fr.) Gray
    rank: species
  12. Amanita excelsa (Fr.) Bertill.
    rank: species
  13. Russula plumbeobrunnea
    rank: species
  14. Amanita franchetii (Boud.) Fayod
    rank: species
  15. Amanita excelsa
    rank: species
  16. Amanita fulva Fr.
    rank: species
  17. Amanita pantherina (DC.) Krombh.
    rank: species
  18. Amanita phalloides (Vaill. ex Fr.) Link
    rank: species
  19. Amanita rubescens Pers.
    rank: species
  20. Amanita strobiliformis (Paulet ex Vittad.) Bertill.
    rank: species
  21. Armillaria ostoyae (Romagn.) Herink
    rank: species
  22. Boletus aereus Bull.
    rank: species
  23. Boletus appendiculatus Peck
    rank: species
  24. Boletus erythropus Krombh.
    rank: species
  25. Boletus impolitus Fr.
    rank: species
  26. Boletus luridus Viv.
    rank: species
  27. Boletus queletii Schulzer
    rank: species
  28. Boletus radicans Rostk.
    rank: species
  29. Boletus reticulatus Schaeff.
    rank: species
  30. Butyriboletus fuscoroseus (Smotl.) Vizzini & Gelardi
    rank: species
  31. Cantharellus ferruginascens P.D.Orton
    rank: species
  32. Clitopilus prunulus (Scop.) P.Kumm.
    rank: species
  33. Cortinarius decipiens (Pers.) Fr.
    rank: species
  34. Cortinarius elatior Fr.
    rank: species
  35. Cortinarius emollitoides Bidaud, Moënne-Locc. & Reumaux
    rank: species
  36. Cortinarius hinnuleus Fr.
    rank: species
  37. Cortinarius obtusus (Fr.) Fr.
    rank: species
  38. Cortinarius rigens (Pers.) Fr.
    rank: species
  39. Cortinarius subsafranopes Rob.Henry
    rank: species
  40. Cortinarius torvus (Fr.) Fr.
    rank: species
  41. Hebeloma crustuliniforme (Bull.) Quél.
    rank: species
  42. Hebeloma sacchariolens Quél.
    rank: species
  43. Hebeloma sinapizans (Paulet) Gillet
    rank: species
  44. Helvella crispa (Scop.) Fr.
    rank: species
  45. Hortiboletus engelii (Hlaváček) Biketova & Wasser
    rank: species
  46. Hortiboletus rubellus (Krombh.) Simonini, Vizzini & Gelardi
    rank: species
  47. Hydnum repandum L.
    rank: species
  48. Inocybe cookei Bres.
    rank: species
  49. Inocybe corydalina Quél.
    rank: species
  50. Inocybe geophylla (Bull.) P.Kumm.
    rank: species
  51. Inocybe jurana (Pat.) Sacc.
    rank: species
  52. Inocybe maculata Boud.
    rank: species
  53. Inocybe petiginosa (Fr.) Gillet
    rank: species
  54. Inocybe phaeocomis (Pers.) Kuyper
    rank: species
  55. Inocybe tabacina Furrer-Ziogas
    rank: species
  56. Laccaria amethystina Cooke
    rank: species
  57. Laccaria laccata (Scop.) Cooke
    rank: species
  58. Lactarius blennius (Fr.) Fr.
    rank: species
  59. Lactarius circellatus Fr.
    rank: species
  60. Lactarius controversus Pers.
    rank: species
  61. Lactarius decipiens Quél.
    rank: species
  62. Lactarius fluens Boud.
    rank: species
  63. Lactarius fulvissimus Romagn.
    rank: species
  64. Lactarius necator (Bull.) Pers.
    rank: species
  65. Lactarius pallidus Pers.
    rank: species
  66. Lactarius pubescens Fr.
    rank: species
  67. Lactarius quietus (Fr.) Fr.
    rank: species
  68. Lactarius serifluus (DC.) Fr.
    rank: species
  69. Lactarius subdulcis (Pers.) Gray
    rank: species
  70. Lactarius subsericatus Kühner & Romagn.
    rank: species
  71. Leccinum carpini (R.Schulz) M.M.Moser ex D.A.Reid
    rank: species
  72. Leccinum duriusculum (Schulzer ex Kalchbr.) Singer
    rank: species
  73. Leccinum scabrum (Bull.) Gray
    rank: species
  74. Parasola conopilea (Fr.) Örstadius & E.Larss.
    rank: species
  75. Paxillus involutus (Batsch) Fr.
    rank: species
  76. Russula amoenolens Romagn.
    rank: species
  77. Russula atropurpurea (Krombh.) Britzelm.
    rank: species
  78. Russula carpini R.Girard & Heinem.
    rank: species
  79. Russula chloroides (Krombh.) Bres.
    rank: species
  80. Russula clariana R.Heim ex Kuyper & Vuure
    rank: species
  81. Russula cuprea Krombh.
    rank: species
  82. Russula curtipes F.H.Møller & Jul.Schäff.
    rank: species
  83. Russula cyanoxantha (Schaeff.) Fr.
    rank: species
  84. Russula delica Fr.
    rank: species
  85. Russula farinipes Romell
    rank: species
  86. Russula fellea (Fr.) Fr.
    rank: species
  87. Russula foetens Pers.
    rank: species
  88. Russula grisea Fr.
    rank: species
  89. Russula ionochlora Romagn.
    rank: species
  90. Russula langei Bon
    rank: species
  91. Russula laurocerasi Melzer
    rank: species
  92. Russula lutea Vent.
    rank: species
  93. Russula mairei Singer
    rank: species
  94. Russula melliolens Quél.
    rank: species
  95. Russula melzeri Zvára
    rank: species
  96. Russula nigricans Fr.
    rank: species
  97. Russula nitida (Pers.) Fr.
    rank: species
  98. Russula ochroleuca Fr.
    rank: species
  99. Russula olivacea (Schaeff.) Fr.
    rank: species
  100. Russula parazurea Jul.Schäff.
    rank: species
  101. Russula persicina Krombh.
    rank: species
  102. Russula plumbeobrunnea Jurkeit & Schössler
    rank: species
  103. Russula praetervisa Sarnari
    rank: species
  104. Russula pseudointegra Arnould & Goris
    rank: species
  105. Russula puellaris Fr.
    rank: species
  106. Russula puellula Ebbesen, F.H.Møller & Jul.Schäff.
    rank: species
  107. Russula risigallina (Batsch) Sacc.
    rank: species
  108. Russula solaris Ferd. & Winge
    rank: species
  109. Russula velenovskyi Melzer & Zvára
    rank: species
  110. Russula vesca Fr.
    rank: species
  111. Russula veternosa Fr.
    rank: species
  112. Russula virescens (Schaeff.) Fr.
    rank: species
  113. Scleroderma bovista Fr.
    rank: species
  114. Suillus grevillei (Klotzsch) Singer
    rank: species
  115. Tricholoma acerbum (Bull.) Quél.
    rank: species
  116. Tricholoma fulvum (DC.) Bigeard & H.Guill.
    rank: species
  117. Tricholoma inocyboides Corner
    rank: species
  118. Tricholoma saponaceum (Fr.) P.Kumm.
    rank: species
  119. Tricholoma scalpturatum (Fr.) Quél.
    rank: species
  120. Tricholoma sulphureum
    rank: species
  121. Tricholoma ustale (Fr.) P.Kumm.
    rank: species
  122. Tuber aestivum (Wulfen) Spreng.
    rank: species
  123. Xerocomellus porosporus (Imler ex Watling) Šutara
    rank: species
  124. Xerocomellus rubellus (Krombh.) Šutara
    rank: species
  125. Xerocomus chrysenteron (Fr.) Quel.
    rank: species
  126. Xerocomus cisalpinus Simonini, H.Ladurner & Peintner
    rank: species
  127. Xerocomus moravicus (Vaček) Herink
    rank: species
  128. Xerocomus porosporus Imler
    rank: species
  129. Xerocomus pruinatus (Fr. & Hök) Quél.
    rank: species
  130. Xerocomus rubellus (Krombh.) Quél.
    rank: species
  131. Xerocomus subtomentosus (L.) Quél.
    rank: species

Geographic Coverages

The grounds of Meise Botanic Garden, Meise, Belgium

Bibliographic Citations

  1. Alessio C. L. (1985). Boletus. Fungi Europaei Vol. 2. Libreria editrice Giovanna. Saronno. -
  2. Basso, M.T. (1999). Lactarius. Fungi Europaei Vol. 7. Mykoflora, Italia. -
  3. Brandrud T.E., Lindström H., Marklund H., Melot J. & Muskos S. (1989-1998). Cortinarius, Flora Photographica. 1-4 Matfors, Cortinarius HB. -
  4. Breitenbach J. & Kränzlin F (1991). Champignons de Suisse Tome 3, Bolets et Champignons à lames 1ère partie. Mykologia, Luzern. -
  5. Breitenbach J. & Kränzlin F (1995). Champignons de Suisse Tome 4, Champignons à lames 2ème partie. Mykologia, Luzern. -
  6. Breitenbach J. & Kränzlin F (2000). Champignons de Suisse Tome 5, Champignons à lames 3ème partie. Mykologia, Luzern. -
  7. Breitenbach J. & Kränzlin F (2005). Champignons de Suisse Tome 6, Russulaceae. Mykologia, Luzern. -
  8. Buyck B. (1990). Determinatiesleutel voor het geslacht Russula aan de hand van veldkenmerken. UGent, België. -
  9. Dam N. & Kuyper T. W. (2011). Het geslacht Cortinarius in Nederland 10: een voorlopige sleutel. Coolia 54 (4): 189-208. -
  10. den Bakker H. C. & Noordeloos M. E. (2005). A revision of European species of Leccinum Gray and notes on extralimital species. Persoonia 18 (4): 511-574. -
  11. Heilmann-Clausen J., Verbeken A. & Vesterholt J. (1998). The genus Lactarius. Fungi of Northern Europe Vol. 2. Svampetryk, Denmark. -
  12. Knudsen H. & Vesterholt J. Editors (2008). Funga Nordica. Agaricoid, boletoid and cyphelloid genera. Nordsvamp, Denmark. -
  13. Ladurner H. & Simonini G. (2003). Xerocomus. Fungi Europaei Vol. 6. Edizioni Canduso, Italia. -
  14. Munnoz J. A. 2005. Boletus s.l. (2005). Fungi Europaei Vol. 2b. Edizioni Canduso, Italia. -
  15. Noordeloos M. E. (1999). Hoe geraak ik thuis in de Ridderzwammen? Coolia 42 (3): 163-182. -
  16. Phillips R. (1981). Paddestoelen van West-Europa. Uitgeverij Het Spectrum, Nederland. -
  17. Riva A. (2003). Tricholoma suppl. Fungi Europaei Vol. 3a. Edizioni Canduso, Italia. -
  18. Romagnesi H. (1967). Les Russules d’Europe et d’Afrique du Nord. Bordas, Paris. -
  19. Sarnari M. (1995-2005). Monografia illustrata del genere Russula in Europa. Associazione Micologica Bresadola, Trento. -
  20. Stangl J. (1989). Die Gattung Inocybe in Bayern. Hoppea 46: 5-388. -
  21. Van De Kerckhove, O. (2011). Red List ectomycorrhizal fungi and their dependence on park management. Scripta Botanica Belgica, 47(47), 181–191. -
  22. Walleyn, R., Kesel, A. D., Verbeken, A., & Kerckhove, O. (1998). Mycorrhizal fungi in the Domein van Bouchout. AMK Mededelingen, (1), 14-17. -
  23. Wieczorek, J., Bloom, D., Guralnick, R., Blum, S., Döring, M., Giovanni, R., ... & Vieglais, D. (2012). Darwin Core: an evolving community-developed biodiversity data standard. PloS one, 7(1), e29715. - https://doi.org/10.1371/journal.pone.0029715

Contacts

Meise Botanic Garden
originator
position: Garden
Meise Botanic Garden
BE
Pieter Huybrechts
metadata author
position: Researcher
Meise Botanic Garden
BE
email: pieter.huybrechts@plantentuinmeise.be
userId: http://orcid.org/0000-0002-6658-6062
Iris Van der Beeten
metadata author
position: Researcher
Meise Botanic Garden
BE
email: iris.vanderbeeten@plantentuinmeise.be
Omer Van de Kerckhove
metadata author
position: Researcher
Meise Botanic Garden
BE
email: omer.vandekerckhove@plantentuinmeise.be
userId: https://www.linkedin.com/profile/view?id=omer-van-de-kerckhove-2836a7156
Pieter Huybrechts
programmer
position: RESEARCHER
Meise Botanic Garden
1860
BE
email: pieter.huybrechts@plantentuinmeise.be
userId: http://orcid.org/0000-0002-6658-6062
Omer Van de Kerckhove
content provider
position: RESEARCHER
Meise Botanic Garden
Nieuwelaan 38
Meise
1860
BE
email: omer.vandekerckhove@plantentuinmeise.be
userId: https://www.linkedin.com/profile/view?id=omer-van-de-kerckhove-2836a7156
Iris Van der Beeten
administrative point of contact
position: RESEARCHER
Meise Botanic Garden
Meise
1860
BE
email: iris.vanderbeeten@plantentuinmeise.be
Pieter Huybrechts
administrative point of contact
position: RESEARCHER
Meise Botanic Garden
Meise
1860
BE
userId: http://orcid.org/0000-0002-6658-6062
Omer Van de Kerckhove
originator
position: RESEARCHER
Meise Botanic Garden
Nieuwelaan 38
1860
BE
email: omer.vandekerckhove@plantentuinmeise.be
userId: https://www.linkedin.com/profile/view?id=omer-van-de-kerckhove-2836a7156
Pieter Huybrechts
administrative point of contact
position: Researcher
Meise Botanic Garden
BE
email: pieter.huybrechts@meisebotanicgarden.be
userId: http://orcid.org/0000-0002-6658-6062
Omer Van de Kerckhove
administrative point of contact
position: Researcher
Meise Botanic Garden
BE
email: omer.vandekerckhove@plantentuinmeise.be
userId: https://www.linkedin.com/profile/view?id=omer-van-de-kerckhove-2836a7156
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