We’re sorry, but GBIF doesn’t work properly without JavaScript enabled.
Our website has detected that you are using an outdated insecure browser that will prevent you from using the site. We suggest you upgrade to a modern browser.
{{nav.loginGreeting}}
  • Get data
      • Occurrences
      • GBIF API
      • Species
      • Datasets
      • Occurrence snapshots
      • Hosted portals
      • Trends
  • How-to
    • Share data

      • Quick-start guide
      • Dataset classes
      • Data hosting
      • Standards
      • Become a publisher
      • Data quality
      • Data papers
    • Use data

      • Featured data use
      • Citation guidelines
      • GBIF citations
      • Citation widget
  • Tools
    • Publishing

      • IPT
      • Data validator
      • Scientific Collections
      • Suggest a dataset
      • New data model ⭐️
    • Data access and use

      • Hosted portals
      • Data processing
      • Derived datasets
      • rgbif
      • pygbif
      • MAXENT
      • Tools catalogue
    • GBIF labs

      • Species matching
      • Name parser
      • Sequence ID
      • Relative observation trends
      • GBIF data blog
  • Community
    • Network

      • Participant network
      • Nodes
      • Publishers
      • Network contacts
      • Community forum
      • alliance for biodiversity knowledge
    • Volunteers

      • Mentors
      • Ambassadors
      • Translators
      • Citizen scientists
    • Activities

      • Capacity enhancement
      • Programmes & projects
      • Training and learning resources
      • Data Use Club
      • Living Atlases
  • About
    • Inside GBIF

      • What is GBIF?
      • Become a member
      • Governance
      • Implementation plan
      • Work Programme
      • Funders
      • Partnerships
      • Release notes
      • Contacts
    • News & outreach

      • News
      • Newsletters and lists
      • Events
      • Ebbe Nielsen Challenge
      • Graduate Researchers Award
      • Science Review
      • Data use
  • User profile

Copepod induced bacterial community Raw sequence reads

Dataset homepage

Citation

MGnify (2019). Copepod induced bacterial community Raw sequence reads. Sampling event dataset https://doi.org/10.15468/s0haiz accessed via GBIF.org on 2023-03-27.

Description

Live copepods from the North Atlantic subtropical gyre were collected and rinsed to be used in bioassay-type experiments. Bacteria present in various seawater and copepod treatments were analyzed by targeting the 16S rRNA V3-V4 region. In this study, copepods were observed to increase growth of bacteria which were released to their surroundings. Additionally, copepods may be responsible for inhibiting or inducing growth of specific bacterial groups.

Sampling Description

Sampling

Live copepods from the North Atlantic subtropical gyre were collected and rinsed to be used in bioassay-type experiments. Bacteria present in various seawater and copepod treatments were analyzed by targeting the 16S rRNA V3-V4 region. In this study, copepods were observed to increase growth of bacteria which were released to their surroundings. Additionally, copepods may be responsible for inhibiting or inducing growth of specific bacterial groups.

Method steps

  1. Pipeline used: https://www.ebi.ac.uk/metagenomics/pipelines/4.1

Taxonomic Coverages

Geographic Coverages

Bibliographic Citations

Contacts

originator
University of Massachusetts Dartmouth
metadata author
University of Massachusetts Dartmouth
administrative point of contact
University of Massachusetts Dartmouth
What is GBIF? API FAQ Newsletter Privacy Terms and agreements Citation Code of Conduct Acknowledgements
Contact GBIF Secretariat Universitetsparken 15 DK-2100 Copenhagen Ø Denmark