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Ferns at the Central Siberian Botanical Garden herbarium collections (NS, NSK)

Dataset homepage

Citation

Kovtonyuk N, Han I, Gatilova E, Ovchinnikov Y, Ovchinnikova S, Troshkina V, Lukmanova L, Ebel A, Yakubov V, Lashchinskiy N, Gureyeva I, Artemov I, Zibzeev E (2021). Ferns at the Central Siberian Botanical Garden herbarium collections (NS, NSK). Version 1.4. Central Siberian Botanical Garden SB RAS. Occurrence dataset https://doi.org/10.15468/7k3kz6 accessed via GBIF.org on 2023-06-01.

Description

Herbarium specimens of ferns kept at the Central Siberian Botanical Garden SB RAS (NS, NSK) were digitised in 2021. Specimens of 20 families of Polypodiopsida were included in this dataset except Equisetaceae. Family Ophioglossaceae was digitised and published separately (Kovtonyuk et al., 2021). Specimens published in datasets "Vascular plants from European Russia in the CSBG SB RAS Digital herbarium" (Kovtonyuk, Han, Gatilova, 2020, 2021) and "Foreign Asia herbarium collection in CSBG (NS)" (Gatilova et al., 2020) were also excluded.

In the dataset specimens from 43 countries of Europe, Asia, America, Africa and Australia (Oceania) are presented, most of them are from Russia (6918). 5092 specimens from Russia are published in the first time.

Collectors with most gathered specimens are: Krasnoborov I. M. (913), Ivanova M. M. (565), Shaulo D. N. (538), Malyshev L. I. (296), Kiseleva A. A. (281), Lashchinsky N. N. (270), Hanminchun V. M. (251), Vodopyanova N. S. (230), Bardunov L. V. (196), Peshkova G. A. (147), Lomonosova M. N. (133), Petrochenko Yu. N. (126), Andrulaitis S. Yu. (126), Artemov I. A. (116), Arslanova N. K. (Kovtonyuk N. K.) (104), Molchanov E. F. (93), Bolshakov N. M. (88), Chepurnov A. A. (85), Maskaev Yu. M. (81), Vlasova N. V. (76), Ronginskaya A.V. (73), Vereshchagin V. I. (73), Doronkin V. M. (71), Friesen N. V. (67), Popov M. G. (62), Zuev V. V. (61), Titov E. (49), Starovoitova Z. (49), Pospelov I. N. (44), Tyulina L. N. (42), Nechaev A. A. (42).

Purpose

The purpose of this publication is to share biodiversity data by using GBIF on example of the ferns stored at the Central Siberian Botanic Garden SB RAS in NS and NSK collections and provide open online access to the CSBG SB RAS Digital herbarium (http://herb.csbg.nsc.ru:8081) as a data worldwide resource for studying biodiversity.

Sampling Description

Study Extent

All ferns stored in NS and NSK herbarium collections were digitized by staff of the Digitization group in the Vascular Plant Systematics Laboratory of CSBG SB RAS.

Sampling

Dried and pressed herbarium specimens were digitized using two special scanners, ObjectScan 1600, according to the international standards, at 600 dpi, with a barcode, 24-color scale and spatial scale bar (Kovtonyuk, 2017; Kovtonyuk, Han, Gatilova, 2018). Images (*.jpg files) and metadata are stored in the CSBG SB RAS Digital Herbarium generated by ScanWizard Botany and MiVapp Botany software (Microtek, Taiwan).

Quality Control

Specialists from the Tomsk State Univercity, Altay State Univercity (Barnaul), Irkutsk State University, Taymyr Nature Reserve, Main botanical Garden (Moskow), and the CSBG SB RAS took part in the identification of herbarium specimens.

Method steps

  1. The digitization process includes the following 6 steps (Kovtonyuk, Han, Gatilova, 2018): 1. Mounting of dry plant material onto a herbarium sheet; 2. Checking the identification and nomenclature by a specialist; 3. Barcoding the specimen: printing a barcode on the thermal printer and affixing it to the herbarium sheet; 4. Placing the herbarium sheet, 24-color scale and scale bar on the scanner platform and image capturing; 5. Generating metadata, labeling OCR by ScanWizard Botany and verification of the label text by experts; 6. Archive management by MiVapp-Botany.

Taxonomic Coverages

Specimens of 20 families of ferns were included in this dataset: Anemiaceae (2), Aspleniaceae (391), Athyriaceae (1132), Blechnaceae (21), Cyatheaceae (9), Cystopteridaceae (1816), Dennstaedtiaceae (232), Dryopteridaceae (1594), Hymenophyllaceae (8), Lygodiaceae (2), Marsileaceae (4), Onocleaceae (232), Osmundaceae (39), Plagiogyriaceae (1), Polypodiaceae (439), Psilotaceae (1), Pteridaceae (425), Salviniaceae (58), Thelypteridaceae (284), Woodsiaceae (1068). The Ophioglossaceae family was previously published in dataset “Ophioglossaceae at the Central Siberian Botanical Garden herbarium collections (NS, NSK)”. The Equisetaceae family was excluded from this dataset. Most specimens are from the genera Dryopteris (1280), Cystopteris (1098), Woodsia (1067), Athyrium (803), Gymnocarpium (709), Polypodium (416), Asplenium (340), Diplazium (325), Polystichum (233), Pteridium (205), Cryptogramma (201), Phegopteris (158), Matteuccia (154), Cheilanthes (120), Thelypteris (85), Aspidium (68), Salvinia (56), Adiantum (55), Struthiopteris (46), Camptosorus (41).
  1. Anemiaceae
    rank: family
  2. Aspleniaceae
    rank: family
  3. Athyriaceae
    rank: family
  4. Blechnaceae
    rank: family
  5. Cyatheaceae
    rank: family
  6. Cystopteridaceae
    rank: family
  7. Dennstaedtiaceae
    rank: family
  8. Dryopteridaceae
    rank: family
  9. Hymenophyllaceae
    rank: family
  10. Lygodiaceae
    rank: family
  11. Marsileaceae
    rank: family
  12. Onocleaceae
    rank: family
  13. Osmundaceae
    rank: family
  14. Plagiogyriaceae
    rank: family
  15. Polypodiaceae
    rank: family
  16. Psilotaceae
    rank: family
  17. Pteridaceae
    rank: family
  18. Salviniaceae
    rank: family
  19. Thelypteridaceae
    rank: family
  20. Woodsiaceae
    rank: family
  21. Acrostichum
    rank: genus
  22. Adiantopsis
    rank: genus
  23. Adiantum
    rank: genus
  24. Aleuritopteris
    rank: genus
  25. Ananthacorus
    rank: genus
  26. Anchistea
    rank: genus
  27. Anemia
    rank: genus
  28. Arachniodes
    rank: genus
  29. Argyrochosma
    rank: genus
  30. Aspidium
    rank: genus
  31. Asplenium
    rank: genus
  32. Athyrium
    rank: genus
  33. Azolla
    rank: genus
  34. Blechnum
    rank: genus
  35. Bolbitis
    rank: genus
  36. Camptosorus
    rank: genus
  37. Campyloneurum
    rank: genus
  38. Ceterach
    rank: genus
  39. Cheilanthes
    rank: genus
  40. Coniogramme
    rank: genus
  41. Crypsinus
    rank: genus
  42. Cryptogramma
    rank: genus
  43. Ctenitis
    rank: genus
  44. Cyathea
    rank: genus
  45. Cyclophorus
    rank: genus
  46. Cyrtomium
    rank: genus
  47. Cystopteris
    rank: genus
  48. Dennstaedtia
    rank: genus
  49. Deparia
    rank: genus
  50. Diplazium
    rank: genus
  51. Dryopteris
    rank: genus
  52. Gymnocarpium
    rank: genus
  53. Hymenophyllum
    rank: genus
  54. Hypolepis
    rank: genus
  55. Lepisorus
    rank: genus
  56. Leptorumohra
    rank: genus
  57. Loxogramme
    rank: genus
  58. Lygodium
    rank: genus
  59. Marsilea
    rank: genus
  60. Matteuccia
    rank: genus
  61. Mecodium
    rank: genus
  62. Microlepia
    rank: genus
  63. Monachosorum
    rank: genus
  64. Neocheiropteris
    rank: genus
  65. Nephrodium
    rank: genus
  66. Notholaena
    rank: genus
  67. Onoclea
    rank: genus
  68. Oreopteris
    rank: genus
  69. Osmunda
    rank: genus
  70. Osmundastrum
    rank: genus
  71. Parablechnum
    rank: genus
  72. Parathelypteris
    rank: genus
  73. Pellaea
    rank: genus
  74. Phanerophlebia
    rank: genus
  75. Phegopteris
    rank: genus
  76. Phyllitis
    rank: genus
  77. Pilularia
    rank: genus
  78. Plagiogyria
    rank: genus
  79. Pleopeltis
    rank: genus
  80. Pleurosoriopsis
    rank: genus
  81. Polypodium
    rank: genus
  82. Polystichum
    rank: genus
  83. Protowoodsia
    rank: genus
  84. Pseudocystopteris
    rank: genus
  85. Psilotum
    rank: genus
  86. Pteridium
    rank: genus
  87. Pteris
    rank: genus
  88. Pyrrosia
    rank: genus
  89. Rhizomatopteris
    rank: genus
  90. Salvinia
    rank: genus
  91. Scolopendrium
    rank: genus
  92. Sphaerocionium
    rank: genus
  93. Stegnogramma
    rank: genus
  94. Struthiopteris
    rank: genus
  95. Thelypteris
    rank: genus
  96. Trichomanes
    rank: genus
  97. Woodsia
    rank: genus
  98. Woodwardia
    rank: genus

Geographic Coverages

Specimens from 43 countries presented: Russia (6918), United States of America (270), Germany (145), Canada (60), Georgia (40), Japan (31), Kazakhstan (29), Mongolia (27), Ukraine (25), Paraguay (20), Finland (20), Costa Rica (13), Turkey (12), Switzerland (12), Poland (12), Azerbaijan (12), Hungary (9), Bulgaria (9), Armenia (9), Norway (8), Kyrgyzstan (6), Italy (6), France (6), Moldova (5), Estonia (5), Czechia (5), Belize (5), Sweden (4), Mexico (4), Tajikistan (3), Slovakia (3), Romania (3), Luxembourg (3), Dominican Republic (3), Belarus (3), Uzbekistan (1), Turkmenistan (1), Seychelles (1), New Zealand (1), New Caledonia (1), Greenland (1), China (1), Austria (1). 52 regions of Russia are presented. Among them are all regions of Siberia, Russian Far East, Ural, but most of the specimens from European Russian regions were already published in the dataset "Vascular plants from European Russia in the CSBG SB RAS Digital herbarium" (Kovtonyuk, Han, Gatilova, 2020). Most specimens were collected from Republic of Buryatia (1032), Krasnoyarsk Krai (935), Irkutsk Oblast (823), Tuva Republic (773), Altai Republic (572), Novosibirsk Oblast (456), Primorsky Krai (382), Republic of Khakassia (351), Sakha (Yakutia) Republic (275), Zabaykalsky Krai (252).

Bibliographic Citations

  1. Kovtonyuk N., Han I., Gatilova E. (2019). Digital Herbarium Collections of the Central Siberian Botanical Garden SB RAS, Novosibirsk, Russia. In: Bychkov I., Voronin V. (eds). Information Technologies in the Research of Biodiversity. Springer Proceedings in Earth and Environmental Sciences. Springer, Cham. P.22–27. - DOI: https://doi.org/10.1007/978-3-030-11720-7_4
  2. Kovtonyuk N.K., Han I.V., Gatilova E.A., Pshenichkina Yu.A. (2019). Digital Herbarium of the CSBG SB RAS in Global Biodiversity Information Facilities // Rast. Mir Asian. Russia. N 4 (36). P.68–73. - DOI: 10.21782/RMAR1995-2449-2019-4(68-73).
  3. Kovtonyuk N, Han I, Gatilova E (2020) Vascular plants from European Russia in the CSBG SB RAS Digital Herbarium. Biodiversity Data Journal 8: e56504. - https://doi.org/10.3897/BDJ.8.e56504
  4. Kovtonyuk N., Han I. and Gatilova E. (2018). Digitization of the herbarium specimens of higher vascular plants in the Central Siberian Botanical Garden // Skvortsovia. V. 4, N 3. P.100-111. - http://skvortsovia.uran.ru/2018/4302.pdf
  5. Kovtonyuk, N.K. (2017). Virtual herbarium collections as a resource for taxonomy and biodiversity study // Rast. Mir Asian. Russia. N 1(25). P. 98–104. - DOI:10.21782/RMAR1995-2449-2017-1(98-104).
  6. Shmakov A.I. (2009). Key for the ferns of Russia. Barnaul: Artika, 126 p. ISBN 978-5-904016-12-8 -
  7. Shmakov A.I. (2011). Ferns of North Asia. Barnaul: Artika, 209 p. ISBN 978-5-905454-13-4 -
  8. Малышев Л.И., Доронькин В.М., Власова Н.В., Никифорова О.Д., Овчинникова С.В., Байков К.С., & Ковтонюк Н.К. (2012). Конспект флоры Азиатской России: Сосудистые растения/ Л.И. Малышев [и др.]; под ред. К.С. Байкова. Новосибирск: Издательство СО РАН. - http://doi.org/10.5281/zenodo.4146886
  9. Kovtonyuk N, Han I, Gatilova E, Grant J (2021). Ophioglossaceae at the Central Siberian Botanical Garden herbarium collections (NS, NSK). Version 1.4. Central Siberian Botanical Garden SB RAS. Occurrence dataset - https://doi.org/10.15468/wabgnr
  10. Kovtonyuk N, Han I, Gatilova E (2021). Vascular plants from European Russia in the CSBG SB RAS Digital herbarium. Version 1.9. Central Siberian Botanical Garden SB RAS. Occurrence dataset - https://doi.org/10.15468/7anvyu

Contacts

Nataliya Kovtonyuk
originator
position: Senior researcher
Central Siberian Botanical Garden SB RAS
Zolotodolinskaya Str., 101
Novosibirsk
630090
Novosibirskaya obl.
RU
Telephone: +79529365495
email: knat2008@yandex.ru
userId: http://orcid.org/0000-0002-4018-6634
Irina Han
originator
position: Main engineer
Central Siberian Botanical Garden SB RAS
Zolotodolinskaya Str., 101
Novosibirsk
630090
Novosibirskaya obl.
RU
email: irahan81@gmail.com
userId: http://orcid.org/0000-0001-8385-5247
Evgeniya Gatilova
originator
position: Main specialists
Central Siberian Botanical Garden SB RAS
Zolotodolinskaya Str., 101
Novosibirsk
630090
Novosibirskaya obl.
RU
email: zhenya_kl@mail.ru
userId: http://orcid.org/0000-0001-9478-0244
Yuri Ovchinnikov
originator
position: Main specialist
Central Siberian Botanical Garden SB RAS
Zolotodolinskaya Str., 101
Novosibirsk
630090
Novosibirskaya obl.
RU
email: ovchin60@yandex.ru
Svetlana Ovchinnikova
originator
position: Leading researcher
Central Siberian Botanical Garden SB RAS
Zolotodolinskaya Str., 101
Novosibirsk
630090
Novosibirskaya obl.
RU
email: sv-ovchin@yandex.ru
userId: http://orcid.org/0000-0002-3876-954X
Viktoria Troshkina
originator
position: Head of laboratory
Central Siberian Botanical Garden SB RAS
Zolotodolinskaya Str., 101
Novosibirsk
630090
Novosibirskaya obl.
RU
email: vitroshkina@csbg.nsc.ru
userId: http://orcid.org/0000-0001-5762-4357
Lyalya Lukmanova
originator
position: Senior laboratory assistant
Central Siberian Botanical Garden SB RAS
Zolotodolinskaya Str., 101
Novosibirsk
630090
Novosibirskaya obl.
RU
email: llukz@mail.ru
Alexander Ebel
originator
position: Leading researcher
Central Siberian Botanical Garden SB RAS
Zolotodolinskaya Str., 101
Novosibirsk
630090
Novosibirskaya obl.
RU
email: alex-08@mail2000.ru
Valentin Yakubov
originator
position: Senior Researcher
Federal Scientific Center of the East Asia Terrestrial Biodiversity FEB RAS
Prospekt 100‑let Vladivostoka, 159
Vladivostok
690022
Primorsky Krai
email: yakubov@biosoil.ru
Nikolay Lashchinskiy
originator
position: Сhief researcher
Central Siberian Botanical Garden SB RAS
Zolotodolinskaya Str., 101
Novosibirsk
630090
Novosibirskaya obl.
email: nick_lash@mail.ru
homepage: https://csbg-nsk.ru/lashchinskiy_nn
userId: http://orcid.org/0000-0002-4196-7619
Irina Gureyeva
originator
position: Head of Herbarium
Tomsk State University
36, Lenin Avenue
Tomsk
634050
Tomskaya obl.
RU
email: gureyeva@yandex.ru
homepage: https://persona.tsu.ru/Home/UserProfile/95
Igor Artemov
originator
position: Senior researcher
Central Siberian Botanical Garden SB RAS
Zolotodolinskaya Str., 101
Novosibirsk
630090
Novosibirskaya obl.
RU
email: artemov_1@mail.ru
Evgeniy Zibzeev
originator
position: Head of laboratory
Central Siberian Botanical Garden SB RAS
Zolotodolinskaya Str., 101
Novosibirsk
630090
Novosibirskaya obl.
email: egzibzeev@gmail.com
homepage: https://csbg-nsk.ru/zibzeev_eg
userId: http://orcid.org/0000-0002-7135-0724
Nataliya Kovtonyuk
metadata author
position: Senior researcher
Central Siberian Botanical Garden SB RAS
Zolotodolinskaya Str., 101
Novosibirsk
630090
Novosibirskaya obl.
RU
email: knat2008@yandex.ru
userId: http://orcid.org/0000-0002-4018-6634
Irina Han
metadata author
position: Main engineer
Central Siberian Botanical Garden SB RAS
Zolotodolinskaya Str., 101
Novosibirsk
630090
Novosibirskaya obl.
email: irahan81@gmail.com
userId: http://orcid.org/0000-0001-8385-5247
Nataliya Kovtonyuk
author
position: Senior Researcher
Central Siberian Botanical Garden SB RAS
Zolotodolinskaya Str., 101
Novosibirsk
630090
Novosibirskaya obl.
RU
Telephone: +79529365495
email: knat2008@yandex.ru
userId: http://orcid.org/0000-0002-4018-6634
Nataliya Kovtonyuk
administrative point of contact
position: Senior Researcher
Central Siberian Botanical Garden SB RAS
Zolotodolinskaya Str., 101
Novosibirsk
630090
Novosibirskaya obl.
RU
Telephone: +79529365495
email: knat2008@yandex.ru
userId: http://orcid.org/0000-0002-4018-6634
Irina Han
administrative point of contact
position: main engineer
Central Siberian Botanical Garden SB RAS
Zolotodolinskaya Str., 101
Novosibirsk
630090
Novosibirskaya obl.
RU
email: irahan81@gmail.com
userId: http://orcid.org/0000-0001-8385-5247
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