Diversity of methyl alkyl succinate synthase genes in hydrocarbon seep sediments (Raw sequence reads)
Citation
MGnify (2019). Diversity of methyl alkyl succinate synthase genes in hydrocarbon seep sediments (Raw sequence reads). Sampling event dataset https://doi.org/10.15468/e1exwn accessed via GBIF.org on 2023-02-03.Description
In this study, the potential of hydrocarbon biodegradation in marine sediments was determined through the detection of a functional biomarker, the masD gene encoding (1-methyl-alkyl) succinate synthase, the key enzyme of anaerobic alkane degradation. We studied the masD diversity in 12 sampling sites from 7 methane, gas and hydrocarbon seeps differing in water depth, sediment depth, temperature, sulfate reduction rate and hydrocarbon composition (alkanes, aromatics) by parallel 454-tagged sequencing.Sampling Description
Sampling
In this study, the potential of hydrocarbon biodegradation in marine sediments was determined through the detection of a functional biomarker, the masD gene encoding (1-methyl-alkyl) succinate synthase, the key enzyme of anaerobic alkane degradation. We studied the masD diversity in 12 sampling sites from 7 methane, gas and hydrocarbon seeps differing in water depth, sediment depth, temperature, sulfate reduction rate and hydrocarbon composition (alkanes, aromatics) by parallel 454-tagged sequencing.Method steps
- Pipeline used: https://www.ebi.ac.uk/metagenomics/pipelines/4.1
Taxonomic Coverages
Geographic Coverages
Bibliographic Citations
Contacts
originatorMax Planck Institute for Marine Microbiology
metadata author
Max Planck Institute for Marine Microbiology
administrative point of contact
Max Planck Institute for Marine Microbiology