Genus Hedysarum in CSBG SB RAS Digital herbarium
Citation
Kovtonyuk N, Gatilova E, Han I, Nuzhdina N (2022). Genus Hedysarum in CSBG SB RAS Digital herbarium. Version 1.1. Central Siberian Botanical Garden SB RAS. Occurrence dataset https://doi.org/10.15468/8fhrmd accessed via GBIF.org on 2023-04-01.Description
All specimens from the genus Hedysarum stored in NS and NSK herbarium collections at the Central Siberian Botanical Garden SB RAS were digitized and placed in CSBG SB RAS Digital herbarium (http://herb.csbg.nsc.ru:8081).
The dataset consists of 2005 records of digitized Hedysarum herbarium specimens collected from 19th century to present. For each specimen, the species name, locality, collection date, collector, ecology and revision label are recorded.
Purpose
The purpose of this publication is to share biodiversity data by using GBIF on example of the sweetvetches stored at the Central Siberian Botanic Garden SB RAS in NS and NSK collections and provide open online access to the CSBG SB RAS Digital herbarium (http://herb.csbg.nsc.ru:8081) as a data worldwide resource for studying biodiversity.Sampling Description
Study Extent
All sweetvetches stored in NS and NSK herbarium collections were digitized by staff of the Digitization group in the Vascular Plant Systematics Laboratory of CSBG SB RAS.Sampling
Dried and pressed herbarium specimens were digitized using two special scanners, ObjectScan 1600, according to the international standards, at 600 dpi, with a barcode, 24-color scale and spatial scale bar (Kovtonyuk, 2017; Kovtonyuk, Han, Gatilova, 2018). Images (*.jpg files) and metadata are stored in the CSBG SB RAS Digital Herbarium generated by ScanWizard Botany and MiVapp Botany software (Microtek, Taiwan).Method steps
- The digitization process includes the following 6 steps (Kovtonyuk, Han, Gatilova, 2018): 1. Mounting of dry plant material onto a herbarium sheet; 2. Checking the identification and nomenclature by a specialist; 3. Barcoding the specimen: printing a barcode on the thermal printer and affixing it to the herbarium sheet; 4. Placing the herbarium sheet, 24-color scale and scale bar on the scanner platform and image capturing; 5. Generating metadata, labeling OCR by ScanWizard Botany and verification of the label text by experts; 6. Archive management by MiVapp-Botany.
Taxonomic Coverages
Fabaceae, Hedysarum
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Hedysarumcommon name: Копеечник rank: genus
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Fabaceaecommon name: Бобовые rank: family
Geographic Coverages
Europe, Asia and North America were included in this dataset.
Herbarium materials from 17 countries are presented: Russia (1816), United States of America (45), Mongolia (40), Kazakhstan (35), Tajikistan (17), Canada (15), Kyrgyzstan (10), Azerbaijan (7), Georgia (5), Turkey (5), Japan (3), China (2), Ukraine (2), Italy (1), Slovakia (1), Turkmenistan (1), Uzbekistan (1).
Bibliographic Citations
- Малышев Л.И., Доронькин В.М., Власова Н.В., Никифорова О.Д., Овчинникова С.В., Байков К.С., & Ковтонюк Н.К. (2012). Конспект флоры Азиатской России: Сосудистые растения/ Л.И. Малышев [и др.]; под ред. К.С. Байкова. Новосибирск: Издательство СО РАН. - http://doi.org/10.5281/zenodo.4146886
- Kovtonyuk N., Han I., Gatilova E. (2019). Digital Herbarium Collections of the Central Siberian Botanical Garden SB RAS, Novosibirsk, Russia. In: Bychkov I., Voronin V. (eds). Information Technologies in the Research of Biodiversity. Springer Proceedings in Earth and Environmental Sciences. Springer, Cham. P.22–27. - https://doi.org/10.1007/978-3-030-11720-7_4
- Nuzhdina N.S., Dorogina O.V. & Bondar A.A. (2020). Chloroplast and nuclear ribosomal DNA variation in two geographically and ecologically overlapping Hedysarum species. — Ann. Bot. Fennici 57: 299–308. - https://doi.org/10.5735/085.057.0413
- Nuzhdina N.S, Bondar А.А., Dorogina O.V.(2018). New data on taxonomic and geographic distribution of the trnLUAA intron deletion of chloroplast DNA in Hedysarum L. (Fabaceae L.). - Russian Journal of Genetics. Vol. 54(11):1263-1274. - https://doi.org/10.1134/S1022795418110108
- Gatilova E, Han I, Kovtonyuk N, Shaulo D, Artemov I, Shekhovtsova I, Ankova T, Doronkin V, Troshkina V, Pinzhenina E, Vlasova N, Baikov K, Lomonosova M, Banaev E (2021). Foreign Asia herbarium collection in CSBG (NS). Version 1.5. Central Siberian Botanical Garden SB RAS. Occurrence dataset. - https://doi.org/10.15468/c1y9q2
- Kovtonyuk N, Han I, Gatilova E (2020): Vascular plants from European Russia in the CSBG SB RAS Digital herbarium. v1.9. Central Siberian Botanical Garden SB RAS. Dataset/Occurrence. - http://www.csbg.nsc.ru:8080/ipt/resource?r=euvrus&v=1.9
- Kovtonyuk N, Han I, Gatilova E (2020) Vascular plants from European Russia in the CSBG SB RAS Digital Herbarium. Biodiversity Data Journal 8: e56504. - https://doi.org/10.3897/BDJ.8.e56504
- Gatilova E., Han I., Kovtonyuk N.(2020). Digital inventory of the Foreign Asia section in I.M. Krasnoborov herbarium collection.- Botanica Pacifica. A journal of plant science and conservation. 29(2). P. 155-159. - https://doi.org/10.17581/bp.2020.09213
Contacts
Nataliya Kovtonyukoriginator
position: Senior Researcher
Central Siberian Botanical Garden SB RAS
Zolotodolinskaya Str., 101
Novosibirsk
630090
Novosibirskaya obl.
RU
email: knat2008@yandex.ru
homepage: https://csbg-nsk.ru/kovtonyuk_nk
userId: http://orcid.org/0000-0002-4018-6634
Evgeniya Gatilova
originator
position: main specialist
Central Siberian Botanical Garden SB RAS
Zolotodolinskaya Str., 101
Novosibirsk
630090
Novosibirskaya obl.
RU
email: zhenya_kl@mail.ru
userId: http://orcid.org/0000-0001-9478-0244
Irina Han
originator
position: main engineer
Central Siberian Botanical Garden SB RAS
Zolotodolinskaya Str., 101
Novosibirsk
630090
Novosibirskaya obl.
RU
email: irahan81@gmail.com
userId: http://orcid.org/0000-0001-8385-5247
Natalia Nuzhdina
originator
position: Senior researcher
Central Siberian Botanical Garden SB RAS
Zolotodolinskaya Str., 101
Novosibirsk
630090
Novosibirskaya obl.
RU
email: nszvyagina@mail.ru
homepage: https://csbg-nsk.ru/nuzhdina_ns
userId: http://orcid.org/0000-0002-0634-8820
Nataliya Kovtonyuk
metadata author
position: Senior Researcher
Central Siberian Botanical Garden SB RAS
Zolotodolinskaya Str., 101
Novosibirsk
630090
Novosibirskaya obl.
RU
email: knat2008@yandex.ru
homepage: https://csbg-nsk.ru/kovtonyuk_nk
userId: http://orcid.org/0000-0002-4018-6634
Evgeniya Gatilova
metadata author
position: main specialist
Central Siberian Botanical Garden SB RAS
Zolotodolinskaya Str., 101
Novosibirsk
630090
Novosibirskaya obl.
email: zhenya_kl@mail.ru
userId: http://orcid.org/0000-0001-9478-0244
Nataliya Kovtonyuk
author
position: Senior Researcher
Central Siberian Botanical Garden SB RAS
Zolotodolinskaya Str., 101
Novosibirsk
630090
Novosibirskaya obl.
RU
email: knat2008@yandex.ru
homepage: https://csbg-nsk.ru/kovtonyuk_nk
userId: http://orcid.org/0000-0002-4018-6634
Nataliya Kovtonyuk
administrative point of contact
position: Senior Researcher
Central Siberian Botanical Garden SB RAS
Zolotodolinskaya Str., 101
Novosibirsk
630090
Novosibirskaya obl.
RU
email: knat2008@yandex.ru
homepage: https://csbg-nsk.ru/kovtonyuk_nk
userId: http://orcid.org/0000-0002-4018-6634