Archaeal 16S Ribosomal RNA RefSeq Targeted Loci Project

Richard McVeigh

doi:10.15468/sn5bha

Archaeal 16S Ribosomal RNA RefSeq Targeted Loci Project

Citation

McVeigh R (2023). Archaeal 16S Ribosomal RNA RefSeq Targeted Loci Project. National Center for Biotechnology Information (NCBI). Occurrence dataset https://doi.org/10.15468/sn5bha accessed via GBIF.org on 2023-06-04.

Description

The small subunit ribosomal RNA is a useful phylogenetic marker that has been used extensively for evolutionary analyses. The RefSeq dataset contains curated 16S ribosomal RNA sequences that correspond to archaea type materials. The RefSeq records may contain corrections to the sequence or taxonomy as compared to the original INSD submission, and may have additional information added that is not found in the original. All sequences will have the same project ID and can be found as such. Database URL: http://www.ncbi.nlm.nih.gov/bioproject/PRJNA33317.

Taxonomic Coverages

Geographic Coverages

Bibliographic Citations

O'Leary, N.A., Wright, M.W., Brister, J.R., Ciufo, S., Haddad, D., McVeigh, R., Rajput, B., Robbertse, B., Smith-White, B., Ako-Adjei, D., Astashyn, A., Badretdin, A., Bào, Y., Blinkova, O., Brover, V., Chetvernin, V., Choi, J., Cox, E., Ermolaeva, O.D., Farrell, C.M., Goldfarb, T., Gupta, T., Haft, D.H., Hatcher, E., Hlavina, W., Joardar, V.S., Kodali, V.K., Li, W.J., Maglott, D.R., Masterson, P., McGarvey, K.M., Murphy, M.R., O'Neill, K., Pujar, S., Rangwala, S.H., Rausch, D., Riddick, L.D., Schoch, C.L., Shkeda, A., Storz, S.S., Sun, H., Thibaud-Nissen, F., Tolstoy, I., Tully, R.E., Vatsan, A.R., Wallin, C., Webb, D., Wu, W.X., Landrum, M.J., Kimchi, A., Tatusova, T.A., DiCuccio, M., Kitts, P.A., Murphy, T.D., Pruitt, K.D. (2016). Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation. Nucleic Acids Research, 44, D733 - D745. - DOI:10.1093/nar/gkv1189
Conrad L Schoch, Stacy Ciufo, Mikhail Domrachev, Carol L Hotton, Sivakumar Kannan, Rogneda Khovanskaya, Detlef Leipe, Richard Mcveigh, Kathleen O’Neill, Barbara Robbertse, Shobha Sharma, Vladimir Soussov, John P Sullivan, Lu Sun, Seán Turner, Ilene Karsch-Mizrachi, NCBI Taxonomy: a comprehensive update on curation, resources and tools, Database, Volume 2020, 2020, baaa062, https://doi.org/10.1093/database/baaa062 - DOI:10.1093/database/baaa062

Contacts

Richard McVeigh
originator
position: Prokaryote RefSeq curator
National Center for Biotechnology Information
8600 Rockville Pike
Bethesda
20894
MD
US
email: mcveigh@ncbi.nlm.nih.gov
homepage: https://www.ncbi.nlm.nih.gov/