Ogasawara DNA barcode database

Natsuko I. Kondo

doi:10.15468/xahaxu

Ogasawara DNA barcode database

Citation

I. Kondo N (2022). Ogasawara DNA barcode database. Version 1.4. National Institute of Genetics, ROIS. Occurrence dataset https://doi.org/10.15468/xahaxu accessed via GBIF.org on 2023-10-04.

Description

This dataset contains 50 specimen records of 1 suborder, 4 family, 2 subfamily, 6 genus and 4 species of insects and freshwater animals in Ogasawara Islands, Japan between 2003 and 2017 published by National Institute for Environmental Studies, Japan (NIES). The Ogasawara DNA barcode database can be found at https://www.nies.go.jp/ogasawara/.

Sampling Description

Study Extent

Freshwater invertebrates were sampled in Ogasawara Islands from 2003 to 2017.

Sampling

Freshwater invertebrates were sampled from rivers and dams in Ogasawara Islands from 2003 to 2017. Samples were collected on D-frame nets with a mesh size of 0.475 mm. We also picked up samples from the underneath the stones on the bottom of rivers. Samples were preserved in 99.5% ethanol until DNA extraction.

Method steps

Specimens were removed from ethanol and identified by morphology.
After morphological identification, samples were subjected to DNA extraction. Based on the partial sequence of COI, we checked for discrepancies in morphological identification and DNA sequence data.

Taxonomic Coverages

Brachycera
rank: suborder
Tipulidae
rank: family
Talitridae
rank: family
Sphaeromatidae
rank: family
Sphaeriidae
rank: family
Orthocladiinae
rank: subfamily
Chironominae
rank: subfamily
Gyraulus
rank: genus
Ablabesmyia
rank: genus
Thienemanniella
rank: genus
Cricotopus
rank: genus
Simulium
rank: genus
Limnophora
rank: genus
Physella
rank: genus
Macropelopia
rank: genus
Chironomus
rank: genus
Stenomelania
rank: genus

Geographic Coverages

Ogasawara Islands

Bibliographic Citations

Contacts

Natsuko I. Kondo
originator
position: Senior Researcher
National Institute for Environmental Studies
16-2 Onogawa
Tsukuba
305-8506
Ibaraki
JP
Telephone: +8129-850-2860
email: kondo.natsuko@nies.go.jp

Natsuko I. Kondo
metadata author
position: Senior Researcher
National Institute for Environmental Studies
16-2 Onogawa
Tsukuba
305-8506
Ibaraki
JP
Telephone: +8129-850-2860
email: kondo.natsuko@nies.go.jp

Natsuko I. Kondo
content provider
position: Senior Researcher
National Institute for Environmental Studies
16-2 Onogawa
Tsukuba
305-8506
Ibaraki
JP
Telephone: +8129-850-2860
email: kondo.natsuko@nies.go.jp

Ryuhei Ueno
content provider
position: Senior Researcher
National Institute for Environmental Studies
16-2 Onogawa
Tsukuba
305-8506
Ibaraki
JP
Telephone: +8129-850-2408
email: uenor@nies.go.jp

Kiyoshi Satake
content provider
position: Senior Research Associate
National Institute for Environmental Studies
16-2 Onogawa
Tsukuba
305-8506
Ibaraki
JP
Telephone: +8129-850-2446
email: satanii@nies.go.jp

Katsuhiko Yoshida
content provider
position: Senior Researcher
National Institute for Environmental Studies
16-2 Onogawa
Tsukuba
305-8506
Ibaraki
JP
Telephone: +8129-850-2443
email: kyoshida@nies.go.jp

Kumiko Totsu
programmer
position: Specialist (Database engineer)
National Institute for Environmental Studies
16-2 Onogawa
Tsukuba
305-8506
Ibaraki
JP
Telephone: +8129-850-2894
email: totsu.kumiko@nies.go.jp

Natsuko I. Kondo
administrative point of contact
position: Senior Researcher
National Institute for Environmental Studies
16-2 Onogawa
Tsukuba
305-8506
Ibaraki
JP
Telephone: +8129-850-2860
email: kondo.natsuko@nies.go.jp

Biodiversity Division
administrative point of contact
National Institute for Environmental Studies
email: biodiv.data@nies.go.jp