We’re sorry, but GBIF doesn’t work properly without JavaScript enabled.
Our website has detected that you are using an outdated insecure browser that will prevent you from using the site. We suggest you upgrade to a modern browser.
{{nav.loginGreeting}}
  • Get data
      • Occurrences
      • GBIF API
      • Species
      • Datasets
      • Trends
  • How-to
    • Share data

      • Quick-start guide
      • Dataset classes
      • Data hosting
      • Standards
      • Become a publisher
      • Data quality
      • Data papers
    • Use data

      • Featured data use
      • Citation guidelines
      • GBIF citations
      • Citation widget
  • Tools
    • Publishing

      • IPT
      • Data validator
      • Scientific Collections
      • Suggest a dataset
    • Users

      • Data processing
      • Derived datasets
      • rgbif
      • MAXENT
      • Tools catalogue
    • GBIF labs

      • Species matching
      • Name parser
      • Sequence ID
      • Relative observation trends
      • GBIF data blog
  • Community
    • Network

      • Participant network
      • Nodes
      • Publishers
      • Network contacts
      • Community forum
      • alliance for biodiversity knowledge
    • Volunteers

      • Mentors
      • Ambassadors
      • Translators
      • Citizen scientists
    • Activities

      • Capacity enhancement
      • Programmes & projects
      • Training and learning resources
      • Data Use Club
      • Living Atlases
  • About
    • Inside GBIF

      • What is GBIF?
      • Become a member
      • Governance
      • Funders
      • Partnerships
      • Release notes
      • Implementation plan
      • Contacts
    • News & outreach

      • News
      • Newsletters and lists
      • Events
      • Ebbe Nielsen Challenge
      • Young Researchers Award
      • Science Review
  • User profile

Ogasawara DNA barcode database

Citation

I. Kondo N (2022). Ogasawara DNA barcode database. Version 1.4. National Institute of Genetics, ROIS. Occurrence dataset https://doi.org/10.15468/xahaxu accessed via GBIF.org on 2022-05-24.

Description

This dataset contains 50 specimen records of 1 suborder, 4 family, 2 subfamily, 6 genus and 4 species of insects and freshwater animals in Ogasawara Islands, Japan between 2003 and 2017 published by National Institute for Environmental Studies, Japan (NIES). The Ogasawara DNA barcode database can be found at https://www.nies.go.jp/ogasawara/.

Sampling Description

Study Extent

Freshwater invertebrates were sampled in Ogasawara Islands from 2003 to 2017.

Sampling

Freshwater invertebrates were sampled from rivers and dams in Ogasawara Islands from 2003 to 2017. Samples were collected on D-frame nets with a mesh size of 0.475 mm. We also picked up samples from the underneath the stones on the bottom of rivers. Samples were preserved in 99.5% ethanol until DNA extraction.

Method steps

  1. Specimens were removed from ethanol and identified by morphology.
  2. After morphological identification, samples were subjected to DNA extraction. Based on the partial sequence of COI, we checked for discrepancies in morphological identification and DNA sequence data.

Taxonomic Coverages

  1. Brachycera
    rank: suborder
  2. Tipulidae
    rank: family
  3. Talitridae
    rank: family
  4. Sphaeromatidae
    rank: family
  5. Sphaeriidae
    rank: family
  6. Orthocladiinae
    rank: subfamily
  7. Chironominae
    rank: subfamily
  8. Gyraulus
    rank: genus
  9. Ablabesmyia
    rank: genus
  10. Thienemanniella
    rank: genus
  11. Cricotopus
    rank: genus
  12. Simulium
    rank: genus
  13. Limnophora
    rank: genus
  14. Physella
    rank: genus
  15. Macropelopia
    rank: genus
  16. Chironomus
    rank: genus
  17. Stenomelania
    rank: genus

Geographic Coverages

Ogasawara Islands

Bibliographic Citations

Contacts

Natsuko I. Kondo
originator
position: Senior Researcher
National Institute for Environmental Studies
16-2 Onogawa
Tsukuba
305-8506
Ibaraki
JP
Telephone: +8129-850-2860
email: kondo.natsuko@nies.go.jp
Natsuko I. Kondo
metadata author
position: Senior Researcher
National Institute for Environmental Studies
16-2 Onogawa
Tsukuba
305-8506
Ibaraki
JP
Telephone: +8129-850-2860
email: kondo.natsuko@nies.go.jp
Natsuko I. Kondo
content provider
position: Senior Researcher
National Institute for Environmental Studies
16-2 Onogawa
Tsukuba
305-8506
Ibaraki
JP
Telephone: +8129-850-2860
email: kondo.natsuko@nies.go.jp
Ryuhei Ueno
content provider
position: Senior Researcher
National Institute for Environmental Studies
16-2 Onogawa
Tsukuba
305-8506
Ibaraki
JP
Telephone: +8129-850-2408
email: uenor@nies.go.jp
Kiyoshi Satake
content provider
position: Senior Research Associate
National Institute for Environmental Studies
16-2 Onogawa
Tsukuba
305-8506
Ibaraki
JP
Telephone: +8129-850-2446
email: satanii@nies.go.jp
Katsuhiko Yoshida
content provider
position: Senior Researcher
National Institute for Environmental Studies
16-2 Onogawa
Tsukuba
305-8506
Ibaraki
JP
Telephone: +8129-850-2443
email: kyoshida@nies.go.jp
Kumiko Totsu
programmer
position: Specialist (Database engineer)
National Institute for Environmental Studies
16-2 Onogawa
Tsukuba
305-8506
Ibaraki
JP
Telephone: +8129-850-2894
email: totsu.kumiko@nies.go.jp
Natsuko I. Kondo
administrative point of contact
position: Senior Researcher
National Institute for Environmental Studies
16-2 Onogawa
Tsukuba
305-8506
Ibaraki
JP
Telephone: +8129-850-2860
email: kondo.natsuko@nies.go.jp
Biodiversity Division
administrative point of contact
National Institute for Environmental Studies
email: biodiv.data@nies.go.jp
What is GBIF? API FAQ Newsletter Privacy Terms and agreements Citation Code of Conduct Acknowledgements
Contact GBIF Secretariat Universitetsparken 15 DK-2100 Copenhagen Ø Denmark