Marine Microbes from RV Investigator voyage IN2014_E03, Australia (2014)

Mark Brown

doi:10.15468/zkry65

Marine Microbes from RV Investigator voyage IN2014_E03, Australia (2014)

Citation

Brown M (2022). Marine Microbes from RV Investigator voyage IN2014_E03, Australia (2014). CSIRO National Collections and Marine Infrastructure (NCMI) Information and Data Centre (IDC). Occurrence dataset https://doi.org/10.15468/zkry65 accessed via GBIF.org on 2024-12-11.

Description

This dataset was acquired on the RV Investigator voyage IN2014_E03. This was a gear trials voyage testing gear and work procedures prior to beginning scientific surveys. Full details of data, reports and publications of the voyage is at http://www.marine.csiro.au/data/trawler/survey_details.cfm?survey=IN2014_E03

Note on data download/processing: Data downloaded from Australian Microbiome Initiative via Bioplatforms Australia Data Portal on 17 June 2022. The search filter applied to download data from Bioplatforms Australia Data portal are stored in the Darwin Core property (identificationRemarks). Taxonomy is assigned according to the taxonomic database (SILVA 138) and method (Sklearn) which is stored in the Darwin Core Extension DNA derived data property (otu_db). Prefix were removed from the taxonomic names as shown in the example (e.g. d__Bacteria to Bacteria). Scientific name is assigned to the valid name available from the highest taxonomic rank.

This collection is published as Darwin Core Occurrence, so the event level measurements need to be replicated for every occurrence. Instead of data replication, the event level eMoF data are made available separately at https://www.marine.csiro.au/data/services/obisau/emof_export.cfm?ipt_resource=bioplatforms_mm_in2014_e03

Sampling Description

Study Extent

Marine waters of Australia and adjacent seas

Sampling

Samples are typically from Niskin bottles from CTD's.

Method steps

The methods and procedures for the denoised data published here are described at https://data.bioplatforms.com/organization/pages/australian-microbiome/amplicon-datatypes

Additional info

marine, harvested by iOBIS

Taxonomic Coverages

Geographic Coverages

Tasmanian coast

Bibliographic Citations

Contacts

Mark Brown
originator
position: Principal Investigator
School of Environmental and Life Sciences, University of Newcastle
Callaghan
2308
New South Wales
AU
email: mark.brown2@csiro.au

Mark Brown
metadata author
position: Principal Investigator
School of Environmental and Life Sciences, University of Newcastle
Callaghan
2308
New South Wales
AU
email: mark.brown2@csiro.au

OBIS Australia Node manager
publisher
position: OBIS Australia Data Manager
CSIRO National Collections and Marine Infrastructure
Castray Esplanade
Hobart
7000
Tasmania
AU
email: obisau@csiro.au
homepage: http://www.obis.org.au

Mark Brown
administrative point of contact
position: Principal Investigator
School of Environmental and Life Sciences, University of Newcastle
Callaghan
2308
New South Wales
AU
email: mark.brown2@csiro.au