Crowdsourcing fungal biodiversity: revision of inaturalist observations in Northwestern Siberia
Citation
Filippova N, Ageev D, Basov Y, Bilous V, Bochkov D, Bolshakov S, Bushmakova G, Butunina E, Davydov Y, Esengeldenova A, Filippov I, Filippova A, Gerasimov S, Kalinina L, Kinnunen J, Korepanov A, Korotkikh N, Kuzmin I, Kvashnin S, Nakonechny N, Nurkhanov R, Popov E, Potapov K, Rebriev Y, Rezvy A, Romanova S, Strus T, Sundström C, Svetasheva T, Tabone M, Tsarakhova S, Vasina A, Vlasenko A, Vlasenko V, Yakovchenko L, Yakovlev A, Zvyagina E (2022). Crowdsourcing fungal biodiversity: revision of inaturalist observations in Northwestern Siberia. Version 1.20. Yugra State University Biological Collection (YSU BC). Occurrence dataset https://doi.org/10.15468/yjdyam accessed via GBIF.org on 2024-12-12.Description
The dataset presents a snapshot of crowdsourcing data collected on iNaturalist.org and identified by a group of professional mycologists during a revision of crowdsourcing data project (https://sibmyco.org/collections/inaturalist-revision/). The resulted data were exported from iNaturalist.org, analysed and described in a related publication (Filippova et al., 2022).
A regional mycological club was established in 2018, encouraging its members to contribute observations of fungi to iNaturalist.org (https://www.inaturalist.org/projects/fungi-and-myxomycetes-in-northern-west-siberia). A total of about 15K observations of fungi and myxomycetes were uploaded so far, by about 200 observers, from three administrative regions (Yamalo-Nenets Autonomous Okrug, Khanty-Mansi Autonomous Okrug and Tyumen Region).
The goal of the work presented in this study consisted in a collaborative effort of professional mycologists who were invited to help with the identification of these observations and analyze the accumulated data. As the result, all observations were reviewed by at least one expert. About a half of all observations have been identified reliably to the species level and received Research Grade status. Of those, 197 records of 92 species represented finds of taxa new to their respective regions; such finds are listed in the Attachment with brief commentaries; 876 records of 53 species of different protection status provide important data for conservation programs.
The remaining half of the observations consists of records that remained under-identified for various reasons: poor quality photographs, complex taxa (impossible to identify without microscopic or molecular study), or lack of experts in a particular taxonomic group.
Despite that the half of presented records already published through GBIF in "iNaturalist Research-grade Observations" dataset (https://doi.org/10.15468/ab3s5x), we decided to publish a dataset which includes all observations updated by the date of paper publishing and preserved at this state for archiving purposes. The dataset is made with the assumed pros and contras in mind:
Pros: 1) We want to preserve the results of revision work with iNaturalist-based observations in a stable archive. On the contraty, the observations data published on iNaturalist.org are always revised and updated; 2) We aim to publish raw (source) data for the revision paper analyses in a single FAIR archive; 3) We want all records published on iNaturalist.org to be used in further study of fungi in the region and globally, including "Needs ID" status observations; provided that these records were reviewed by professional mycologists and received at least two expert opinions; 4) The resulting dataset was augmented with several fields to add information about regional novelties and identification remarks.
Contras: 1) Duplication of records in two dataset (iNaturalist and ours), which nevertheless could be solved by GBIF duplicates search algorithm.
Sampling Description
Study Extent
To monitor and analyze data on fungi and myxomycetes in the region, in May 2018 we started a project called “Fungi observations in Yugra region”, later renamed to “Fungi and Myxomycetes in Northwestern Siberia” with extended geographic boundaries (https://www.inaturalist.org/projects/mushroom-observations-in-northern-west-siberia). Data in the project was filtered by two high-rank taxa (kingdom Fungi and class Myxomycetes) and administrative borders of three regions (Yamal-Nenets Autonomous Okrug, Khanty-Mansi Autonomous Okrug, and Tyumen Region). An important part of communication on iNaturalist.org – the project journal – exists since 2020 to summarize activities, report interesting finds and announce upcoming events. A series of “bioblitzes” was organized to draw attention of the public to the project and iNaturalist.org in general: the most important regular event is “Mushroom iNat Marathon” (Грибной iNat Марафон), taking place for one week every September since 2019 (https://sibmyco.org/events/bioblitz/). The project audit is regularly published on the Siberian Mycological Society page in the social media (in Russian) (https://vk.com/sibmyco).Sampling
The table resulting from the work of experts on iNaturalist.org was downloaded on 24.02.2022 (as a .csv file) and further analyzed and described in a corresponding puplication.Quality Control
The critical component of the project on iNaturalist.org is its expert community, made up of professional mycologists who identify records and provide feedback on the quality of the incoming data and, as well as monitor the total number of uploaded observations. The expert community on iNaturalist.org includes anyone who is interested in a specific taxon and region and is willing to provide identifications. Nonetheless, the initial number of professional mycologists contributing to taxon identification on iNaturalist.org in the region was low (3-5 users). Therefore, we invited more experts, resulting in a group of 16 professional mycologists revising the accumulated observations for the purpose of creating this publication. We set three tasks: 1) to revise all observations in the project, including those with the Research Grade status (to double-check previous identifications), 2) to identify finds down to the lowest possible taxonomic level (species, genus, or family, etc.) from the features visible in the photographs, 3) to provide at least two expert identifications for each observation.Method steps
- The resulting table, based on the original download of iNaturalist observations and complemented with fields indicating species novelty (dynamicProperties) and identification remarks (identifiedBy, identificationRemarks), was published as a dataset through GBIF (Filippova et al., 2022).
- About 600 observations were removed from the final dataset, since they were protected by the Author's copy rights (all other records have CC licence).
Taxonomic Coverages
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Fungirank: kingdom
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Myxomycetesrank: class
Geographic Coverages
Bibliographic Citations
- N. V. Filippova, D. V. Ageev, Yu. M. Basov, V. V. Bilous, D. A. Bochkov, S. Yu. Bolshakov, G. N. Bushmakova, E. A. Butunina, E.A. Davydov, A. Yu. Esengeldenova, I. V. Filippov, A. V. Filippova, S. V. Gerasimov, L. B. Kalinina, J. Kinnunen, A. Korepanov, N. N. Korotkikh, I. V. Kuzmin, S. V. Kvashnin, A. I. Mingalimova, N. V. Nakonechniy, R. N. Nurhanov, E. S. Popov, K. O. Potapov, Yu. A. Rebriev, A. S. Rezviy, S. R. Romanova, T. L. Strus, C. Sundström, T. Yu. Svetasheva, M. Tabone, S. Tsarakhova, A. L. Vasina, A. V. Vlasenko, V A. Vlasenko, L. S. Yakovchenko, A. A. Yakovlev, Е. A. Zvyagina. 2022. Crowdsourcing fungal biodiversity: revision of inaturalist observations in Northwestern Siberia. Nature Conservation Research [submitted to the journal] -
Contacts
Nina Filippovaoriginator
position: senior researcher
Yugra State University
Khanty-Mansiysk
RU
email: filippova.courlee.nina@gmail.com
userId: http://orcid.org/0000-0002-9506-0991
Dmitry Ageev
originator
position: senior technical support specialist
Signatek LLC
Novosibirsk
RU
email: dim@diamondsteel.ru
userId: http://orcid.org/0000-0002-0485-1908
Yuri Basov
originator
position: chief specialist for ecology
OP IPIGAZ-Sever LLC
Tyumen
RU
email: freeman72rus@yandex.ru
userId: http://orcid.org/0000-0003-2161-3001
Viktoria Bilous
originator
position: music teacher
Kinder Garden №18 "Ulybka"
Khanty-Mansiysk
RU
email: bilous75@mail.ru
Dmitry Bochkov
originator
position: post-graduate student
Moscow State University
Moscow
RU
email: convallaria1128@yandex.ru
userId: http://orcid.org/0000-0002-0337-8389
Sergey Bolshakov
originator
position: researcher
Botanical Institute named after V.L. Komarov
St. Petersburg
RU
email: s.bolshakov.ru@gmail.com
userId: http://orcid.org/0000-0002-6208-7792
Galina Bushmakova
originator
position: research assistant
Malaya Sosva State Nature Reserve
Sovetskiy
RU
email: msosva@gmail.com
Elena Butunina
originator
position: senior researcher
Natural Park «Kondinskie Ozera» named after L.F. Stashkevich
Sovetsky
RU
email: anuna77@bk.ru
userId: http://orcid.org/0000-0002-1803-2962
Yevgeniy Davydov
originator
position: senior researcher
Central Siberian Botanical Garden
Novosibirsk
RU
email: eadavydov@yandex.ru
userId: http://orcid.org/0000-0002-2316-8506
Alexandra Esengeldenova
originator
position: researcher
Natural Park «Kondinskie Ozera» named after L.F. Stashkevich
Sovetsky
RU
email: aleksandra090@mail.ru
Ilya Filippov
originator
position: senior researcher
Yugra State University
Khanty-Mansiysk
RU
email: filip83pov@yandex.ru
userId: http://orcid.org/0000-0002-3639-553X
Alexandra Filippova
originator
position: associate professor
Kemerovo State University
Kemerovo
RU
email: sasha1977@ngs.ru
userId: http://orcid.org/0000-0003-2117-1258
Sergey Gerasimov
originator
position: methodologist-teacher
Bashkir Republican Children's Ecological and Biological Center
Ufa
RU
email: gerasimov.1952@mail.ru
Lyudmila Kalinina
originator
position: researcher
Botanical Institute named after V.L. Komarov
St. Petersburg
RU
email: smillak@gmail.com
userId: http://orcid.org/0000-0002-7809-8891
Juha Kinnunen
originator
position: researcher
Botanical Museum, University of Helsinki
Helsinki
FI
email: bodhi.heera@gmail.com
Alexander Korepanov
originator
position: independent researcher
independent researcher
Khanty-Mansiysk
RU
email: urmansky@rambler.ru
Natalia Korotkikh
originator
position: leading researcher
Natural Park «Kondinskie Ozera» named after L.F. Stashkevich
Sovetsky
RU
email: Korotkich@mail.ru
userId: http://orcid.org/0000-0003-4782-2979
Igor Kuzmin
originator
position: researcher
Tyumen State University
Tyumen
RU
email: ivkuzmintgu@yandex.ru
userId: http://orcid.org/0000-0002-6824-4015
Sergey Kvashnin
originator
position: ecologist
Geo-Vector LLC
Ishim
RU
email: diosinland@yandex.ru
Nikolai Nakonechny
originator
position: senior researcher
Surgut State University
Surgut
RU
email: yyd@list.ru
userId: http://orcid.org/0000-0003-4437-5667
Ruslan Nurkhanov
originator
position: independent researcher
independent researcher
Almaty
KZ
email: nurkhanov@gmail.com
userId: http://orcid.org/0000-0003-2338-6455
Evgeniy Popov
originator
position: senior researcher
Botanical Institute named after V.L. Komarov
St. Petersburg
RU
email: epopov@binran.ru
userId: http://orcid.org/0000-0001-8599-3117
Kim Potapov
originator
position: senior lecturer
Kazan (Volga Region) Federal University
Kazan
RU
email: potapov_ko@mail.ru
userId: http://orcid.org/0000-0002-5103-1021
Yuri Rebriev
originator
position: leading researcher
Southern Scientific Center RAS
Rostov-on-Don
RU
email: rebriev@yandex.ru
userId: http://orcid.org/0000-0001-5156-8593
Anton Rezvy
originator
position: senior researcher
Museum of Nature and Man
Khanty-Mansiysk
RU
email: croc74@mail.ru
userId: http://orcid.org/0000-0002-4694-0861
Sofia Romanova
originator
position: a kindergareen student
Kindergarden N1 "Kolokolchik"
Khanty-Mansiysk
RU
email: bilous75@mail.ru
Tatyana Strus
originator
position: independent researcher
independent researcher
Khanty-Mansiysk
RU
email: strustatjana@yandex.ru
userId: http://orcid.org/0000-0001-5384-5558
Carl Sundström
originator
position: programmer
INTERACT International Network for Terrestrial Research and Monitoring in the Arctic
SE
email: carl.sundstrom95@gmail.com
Tatyana Svetasheva
originator
position: associate professor
Tula State Pedagogical University named after L.N. Tolstoy
Tula
RU
email: foxtail_svett@mail.ru
userId: http://orcid.org/0000-0001-8968-9518
Massimo Tabone
originator
position: researcher of Livorno Mycological Group
Museum of Natural History of the Mediterranean
Girona
ES
email: mastabo@inwind.it
Svetlana Tsarakhova
originator
position: independent researcher
independent researcher
Khanty-Mansiysk
RU
email: tsarakhovasg@gmail.com
Alexandra Vasina
originator
position: deputy director for research
Malaya Sosva State Nature Reserve
Sovetskiy
RU
email: msosva@gmail.com
Anastasia Vlasenko
originator
position: head of the laboratory
Central Siberian Botanical Garden
Novosibirsk
RU
email: Anastasiamix81@mail.ru
userId: http://orcid.org/0000-0002-4342-4482
Vyacheslav Vlasenko
originator
position: senior researcher
Central Siberian Botanical Garden
Novosibirsk
RU
email: vlasenkomyces@mail.ru
userId: http://orcid.org/0000-0001-5928-0041
Lidia Yakovchenko
originator
position: senior researcher
Central Siberian Botanical Garden
Novosibirsk
RU
email: lidiyakovchenko@mail.ru
userId: http://orcid.org/0000-0002-4342-7771
Alexander Yakovlev
originator
position: independent researcher
independent researcher
Cheboksary district, Sinyaly village
RU
email: ekoasio@yandex.ru
userId: http://orcid.org/0000-0002-1841-4047
Elena Zvyagina
originator
position: researcher
Yugra State University
Khanty-Mansiysk
RU
email: mycena@yandex.ru
userId: http://orcid.org/0000-0003-2063-4847
Nina Filippova
metadata author
position: senior researcher
Yugra State University
Khanty-Mansiysk
RU
email: filippova.courlee.nina@gmail.com
userId: http://orcid.org/0000-0002-9506-0991
Nina Filippova
administrative point of contact
position: senior researcher
Yugra State University
Khanty-Mansiysk
RU
email: filippova.courlee.nina@gmail.com
userId: http://orcid.org/0000-0002-9506-0991