Novel Biphenyl Oxidizing Bacteria and Dioxygenase Genes from a Korean Tidal Mudflat
Citation
MGnify (2019). Novel Biphenyl Oxidizing Bacteria and Dioxygenase Genes from a Korean Tidal Mudflat. Sampling event dataset https://doi.org/10.15468/r9si2n accessed via GBIF.org on 2020-01-25.Description
Gene-targeted FLX titanium pyrosequencing integrated with 13C-stable isotope probing (SIP) revealed that tidal mudflat sediments harbor for novel aerobic biphenyl degradative bacteria and aromatic ring hydroxylating dioxygenases (ARHD). Known terrestrial biphenyl oxidizing bacteria and dioxygenase genes were rare in 13C-biphenyl enriched bacterial community. Instead, more than 80% of the detected ARHD genes are not in the public databases.Sampling Description
Sampling
Gene-targeted FLX titanium pyrosequencing integrated with 13C-stable isotope probing (SIP) revealed that tidal mudflat sediments harbor for novel aerobic biphenyl degradative bacteria and aromatic ring hydroxylating dioxygenases (ARHD). Known terrestrial biphenyl oxidizing bacteria and dioxygenase genes were rare in 13C-biphenyl enriched bacterial community. Instead, more than 80% of the detected ARHD genes are not in the public databases.Method steps
- Pipeline used: https://www.ebi.ac.uk/metagenomics/pipelines/4.1
Taxonomic Coverages
Geographic Coverages
Bibliographic Citations
- Lee TK, Lee J, Sul WJ, Iwai S, Chai B, Tiedje JM, Park J. 2011. Novel biphenyl-oxidizing bacteria and dioxygenase genes from a korean tidal mudflat. null vol. 77 - DOI:10.1128/AEM.00023-11
Contacts
originatorYonsei University
metadata author
Yonsei University
administrative point of contact
Yonsei University