Amplicon sequencing of gyrA and parC in Escherichia communities in river/lake sediments

doi:10.15468/xwiamz

Amplicon sequencing of gyrA and parC in Escherichia communities in river/lake sediments

Citation

MGnify (2019). Amplicon sequencing of gyrA and parC in Escherichia communities in river/lake sediments. Sampling event dataset https://doi.org/10.15468/xwiamz accessed via GBIF.org on 2021-01-17.

Description

To describe the abundance of fluoroquinolone resistance mutations in environmental Escherichia communities, and investigate the link between abundance of resistance mutations and fluoroquinolone pollution.

Sampling Description

Sampling

To describe the abundance of fluoroquinolone resistance mutations in environmental Escherichia communities, and investigate the link between abundance of resistance mutations and fluoroquinolone pollution.

Method steps

Pipeline used: https://www.ebi.ac.uk/metagenomics/pipelines/4.1

Taxonomic Coverages

Geographic Coverages

Bibliographic Citations

Johnning A, Kristiansson E, Fick J, Weijdegård B, Larsson DG. 2015. Resistance Mutations in gyrA and parC are Common in Escherichia Communities of both Fluoroquinolone-Polluted and Uncontaminated Aquatic Environments. Front Microbiol vol. 6 - DOI:10.3389/fmicb.2015.01355

Contacts

originator
University of Gothenburg

metadata author
University of Gothenburg

administrative point of contact
University of Gothenburg