This is a test site. The production site with full data is available at GBIF.org
{{nav.loginGreeting}}
  • Get data
      • Occurrences
      • GBIF API
      • Species
      • Datasets
      • Occurrence snapshots
      • Hosted portals
      • Trends
  • How-to
    • Share data

      • Quick-start guide
      • Dataset classes
      • Data hosting
      • Standards
      • Become a publisher
      • Data quality
      • Data papers
    • Use data

      • Featured data use
      • Citation guidelines
      • GBIF citations
      • Citation widget
      • Guides and documentation
  • Tools
    • Publishing

      • IPT
      • Data validator
      • GeoPick
      • New data model
      • GRSciColl
      • Suggest a dataset
      • Metabarcoding data toolkit
    • Data access and use

      • Hosted portals
      • Scientific collections
      • Data processing
      • Derived datasets
      • rgbif
      • pygbif
      • MAXENT
      • Tools catalogue
    • GBIF labs

      • Species matching
      • Name parser
      • Sequence ID
      • Relative observation trends
      • GBIF data blog
  • Community
    • Network

      • Participant network
      • Nodes
      • Publishers
      • Network contacts
      • Community forum
      • alliance for biodiversity knowledge
    • Volunteers

      • Mentors
      • Ambassadors
      • Translators
      • Citizen scientists
    • Activities

      • Capacity development
      • Programmes & projects
      • Training and learning resources
      • Data Use Club
      • Living Atlases
  • About
    • Inside GBIF

      • What is GBIF?
      • Become a member
      • Governance
      • Strategic framework
      • Work Programme
      • Funders
      • Partnerships
      • Release notes
      • Contacts
    • News & outreach

      • News
      • Subscribe
      • Events
      • Awards
      • Science Review
      • Data use
      • Thematic communities
  • User profile

PAMP-tracheo: Vascular plants in Pamplona Basin (Navarra, Spain). Undergraduate thesis, D. Vicente

Citation

Ibáñez R, Imas M, Báscones J C, Vicente D (2018). PAMP-tracheo: Vascular plants in Pamplona Basin (Navarra, Spain). Undergraduate thesis, D. Vicente. Version 2.2. University of Navarra – Department of Environmental Biology. Occurrence dataset https://doi.org/10.15470/tglboy accessed via GBIF.org on 2025-06-17.

Description

This dataset provides information about 2389 preserved specimens from 723 species and subspecies and 80 families of vascular plants. The specimens were collected in the undergraduate thesis project of Vicente (1983), which assessed the vascular plants of Pamplona Basin (Navarra, northern Spain).

Sampling Description

Study Extent

The specimens were collected in Pamplona Basin (Navarra, northern Spain).

Sampling

Samples were collected between the years 1980 and 1983, but most of the specimens were collected in the last two years.

Method steps

  1. Plant collection. Plant vouchers were selected and collected in the field.
  2. Identification to species or subspecies level. Identification was performed between 1980 and 1983 by D. Vicente and J.C. Báscones using Flora europaea (Tutin et al. 1964-1980).
  3. Plant conservation. Specimens were dried and pressed for conservation using standard protocols. Vouchers were deposited in the herbarium of the University of Navarra.
  4. Numbering and digitization of vouchers. From 2012 to date, each specimen was labelled, with a unique collection number, and digitized, using HERBAR software (v3.7.1 Pando et al. 1994-2010).
  5. Revision of species identification. Original identification of some herbarium specimens was revised. Between September 2013 and January 2018, the identification of 140 specimens was corrected, and was refined in 56, either by providing the specific or the subspecific epithet.
  6. Nomenclature was updated using Flora iberica (Castroviejo 1986-2015).
  7. Names of municipalities, localities and place names were standardized according to Toponimia Oficial de Navarra (http://toponimianavarra.tracasa.es/).
  8. Georeferencing. Localities were georeferenced using geographic or UTM or coordinates. Datum and uncertainty were also assigned.
  9. Internet exportation. Data were exported from the HERBAR database under a Darwin Core format (Wieczorek et al. 2012).
  10. Data checking and validation. Coordinates, characters and format of dates were checked for possible mistakes using Darwin test software (v3.3, Ortega-Maqueda & Pando 2008). This software allowed validating data in the Darwin Core format.
  11. Metadata were documented and the dataset was published in the GBIF data portal using the Integrated Publishing Toolkit (IPT v2.3.5) of GBIF.es (http://ipt.gbif.es/).

Additional info

The origin of the PAMP Herbarium dates back to the arrival at the University of Navarra by Professor T.M. Losa España in 1964. One year later M.L. López Fernández began her doctoral thesis, maintaining her contributions to the herbarium uninterruptedly for several decades. Most of the material deposited in the herbarium comes from collections made by researchers from the Department of Environmental Biology (formerly Department of Botany) of the University of Navarra, as a result of theses and dissertations generally carried out in the territory of the Autonomous Community of Navarra (Spain). The herbarium store c. 100 000 sheets with dried specimens. The digitisation of the specimens has been done through the HERBAR v3.7.1 software (Pando et al., 1994-2010) and was supported by the Spanish Government (CGL2007-30978-E, CGL2009-08507-E and CGL2011-15056-E).

Taxonomic Coverages

Out of a total of 2389 specimens, 2363 were identified to species or subspecies level. They belong to 723 species or subspecies and 80 families of vascular plants.
  1. Tracheophyta
    common name: vascular plants rank: phylum
  2. Equisetopsida
    common name: horsetails rank: class
  3. Liliopsida
    common name: monocots rank: class
  4. Magnoliopsida
    common name: dicotyledons rank: class
  5. Pinopsida
    common name: conifers rank: class
  6. Polypodiopsida
    common name: modern ferns rank: class

Geographic Coverages

Specimens were collected in Pamplona Basin (Navarra, northern Spain). The site studied covers an area of over 587 km2. Country: Spain. Province: Navarra (N Spain). Municipalities: Ansoáin, Aranguren, Barañáin, Belascoáin, Beriáin, Berrioplano, Berriozar, Bidaurreta, Burlada, Ciriza, Cizur, Echarri, Egüés, Etxauri, Galar, Goñi, Huarte, Iza, Juslapeña, Noáin - Valle de Elorz, Ollo, Olza, Orcoyen, Pamplona, Tiebas-Muruarte de Reta, Villava – Atarrabia, Zabalza and Zizur Mayor/Zizur Nagusia.

Bibliographic Citations

  1. Ortega-Maqueda I, Pando F (2008): DARWIN TEST (3.3): Una aplicación para la validación y el chequeo de los datos en formato Darwin Core 1.2, Darwin Core 1.4 o Darwin Core Archive. Unidad de Coordinación de GBIF.ES, CSIC, Ministerio de Economía y Competitividad, España. - http://www.gbif.es/Darwin_test/Darwin_test.php
  2. Pando F et al. (1994–2010): HERBAR (3.7): Una aplicación de bases de datos para gestión de herbarios. Unidad de Coordinación de GBIF.ES, CSIC, Ministerio de Ciencia e Innovación, España. - http://www.gbif.es/herbar/herbar.php
  3. Tutin TG, Heywood VH, Burges NA, Moore DM,Valentine DH, Walters SM & Webb DA (eds.) (1964-1980): Flora Europaea, Vols. 1-5, Cambridge UniversityPress, Cambridge. -
  4. Vicente D (1983): Flora vascular de la Cuenca de Pamplona. Undergraduate thesis. University of Navarra. -
  5. Wieczorek J, Bloom D, Guralnick R, Blum S, Döring M, Giovanni R, Robertson T, Vieglais D (2012): Darwin Core: An evolving community-developed biodiversity data standard. PLoS ONE 7(1): e29715. - https://doi.org/10.1371/journal.pone.0029715

Contacts

Ricardo Ibáñez
originator
position: Associate Professor
University of Navarra
C/ Irunlarrea 1
Pamplona
E-31008
Navarra
ES
Telephone: +34948425600
email: ribanez@unav.es
userId: http://orcid.org/0000-0002-1772-4473
María Imas
originator
position: Technician
University of Navarra
C/ Irunlarrea 1
Pamplona
E-31008
Navarra
ES
Telephone: +34948425600
email: mimas@unav.es
Juan Carlos Báscones
originator
position: Professor
University of Navarra
C/ Irunlarrea 1
Pamplona
E-31008
Navarra
ES
Telephone: +34948425600
Doroteo Vicente
originator
position: Researcher
University of Navarra
C/ Irunlarrea 1
Pamplona
E-31008
Navarra
ES
Telephone: +34948425600
Ricardo Ibáñez
metadata author
position: Associate Professor
University of Navarra
C/ Irunlarrea 1
Pamplona
E-31008
Navarra
ES
Telephone: +34948425600
email: ribanez@unav.es
userId: http://orcid.org/0000-0002-1772-4473
María Imas
metadata author
position: Technician
University of Navarra
C/ Irunlarrea 1
Pamplona
E-31008
Navarra
ES
Telephone: +34948425600
email: mimas@unav.es
Leticia Romeo Orradre
processor
position: Technician
University of Navarra
C/ Irunlarrea 1
Pamplona
E-31008
Navarra
ES
Telephone: +34948425600
Ricardo Ibáñez
administrative point of contact
position: Associate Professor
University of Navarra
C/ Irunlarrea 1
Pamplona
E-31008
Navarra
ES
Telephone: +34948425600
email: ribanez@unav.es
userId: http://orcid.org/0000-0002-1772-4473
What is GBIF? API FAQ Newsletter Privacy Terms and agreements Citation Code of Conduct Acknowledgements
Contact GBIF Secretariat Universitetsparken 15 DK-2100 Copenhagen Ø Denmark
GBIF is a Global Core Biodata Resource