We’re sorry, but GBIF doesn’t work properly without JavaScript enabled.
Our website has detected that you are using an outdated insecure browser that will prevent you from using the site. We suggest you upgrade to a modern browser.
{{nav.loginGreeting}}
  • Get data
      • Occurrences
      • GBIF API
      • Species
      • Datasets
      • Occurrence snapshots
      • Hosted portals
      • Trends
  • How-to
    • Share data

      • Quick-start guide
      • Dataset classes
      • Data hosting
      • Standards
      • Become a publisher
      • Data quality
      • Data papers
    • Use data

      • Featured data use
      • Citation guidelines
      • GBIF citations
      • Citation widget
  • Tools
    • Publishing

      • IPT
      • Data validator
      • Scientific Collections
      • Suggest a dataset
      • New data model ⭐️
    • Data access and use

      • Hosted portals
      • Data processing
      • Derived datasets
      • rgbif
      • pygbif
      • MAXENT
      • Tools catalogue
    • GBIF labs

      • Species matching
      • Name parser
      • Sequence ID
      • Relative observation trends
      • GBIF data blog
  • Community
    • Network

      • Participant network
      • Nodes
      • Publishers
      • Network contacts
      • Community forum
      • alliance for biodiversity knowledge
    • Volunteers

      • Mentors
      • Ambassadors
      • Translators
      • Citizen scientists
    • Activities

      • Capacity enhancement
      • Programmes & projects
      • Training and learning resources
      • Data Use Club
      • Living Atlases
  • About
    • Inside GBIF

      • What is GBIF?
      • Become a member
      • Governance
      • Implementation plan
      • Work Programme
      • Funders
      • Partnerships
      • Release notes
      • Contacts
    • News & outreach

      • News
      • Newsletters and lists
      • Events
      • Ebbe Nielsen Challenge
      • Graduate Researchers Award
      • Science Review
      • Data use
  • User profile

Stratification of anaerobic methanotrophs in cold-seep sediments

Dataset homepage

Citation

MGnify (2019). Stratification of anaerobic methanotrophs in cold-seep sediments. Sampling event dataset https://doi.org/10.15468/ipnigo accessed via GBIF.org on 2023-01-27.

Description

Methane seepages typically harbor communities of anaerobic methane oxidizers (ANME), however knowledge about fine-scale vertical variation of ANME in response to geochemical gradients is limited. Here we investigate microbial communities in sediments at two different locations at thge Nyegga field; (1) a push-core below a white microbial mat in the G11 pockmark, and (2) a Gravity-core at CNO3. Both experiments were analysed using 16S rRNA gene tag pyrosequencing and real time quantitative PCR.

Sampling Description

Sampling

Methane seepages typically harbor communities of anaerobic methane oxidizers (ANME), however knowledge about fine-scale vertical variation of ANME in response to geochemical gradients is limited. Here we investigate microbial communities in sediments at two different locations at thge Nyegga field; (1) a push-core below a white microbial mat in the G11 pockmark, and (2) a Gravity-core at CNO3. Both experiments were analysed using 16S rRNA gene tag pyrosequencing and real time quantitative PCR.

Method steps

  1. Pipeline used: https://www.ebi.ac.uk/metagenomics/pipelines/4.1

Taxonomic Coverages

Geographic Coverages

Bibliographic Citations

  1. Roalkvam I, Jørgensen SL, Chen Y, Stokke R, Dahle H, Hocking WP, Lanzén A, Haflidason H, Steen IH. 2011. New insight into stratification of anaerobic methanotrophs in cold seep sediments. null vol. 78 - DOI:10.1111/j.1574-6941.2011.01153.x

Contacts

originator
University of Bergen
metadata author
University of Bergen
administrative point of contact
University of Bergen
What is GBIF? API FAQ Newsletter Privacy Terms and agreements Citation Code of Conduct Acknowledgements
Contact GBIF Secretariat Universitetsparken 15 DK-2100 Copenhagen Ø Denmark