Chironomid Specimen records in the Chironomid DNA Barcode Database.
Citation
Takamura K, Ueno R, I. Kondo N, Hirabayashi K, Kawai K (2024). Chironomid Specimen records in the Chironomid DNA Barcode Database.. Version 1.12. National Institute of Genetics, ROIS. Occurrence dataset https://doi.org/10.15468/hxhow5 accessed via GBIF.org on 2025-04-21.Description
This dataset contains 917 specimen records of 179 chironomid species between 1989 and 2015 in Japan, which are based on the Chironomid DNA Barcode Database published by National Institute for Environmental Studies, Japan (NIES). The Chironomid DNA Barcode Database can be found at https://www.nies.go.jp/yusurika/en/index.html.Sampling Description
Study Extent
Chironomid species were captured in Japan and Tuvalu from 1989 to 2015.Sampling
Specimens were collected in three major ways. (1) Larvae and pupae in bottom sediments were captured with a Ekman bottom grab sampler or a dip net in lentic waters and with a Surber sampler or a D-frame net in lotic waters. Aquatic weeds were also hand-collected for periphytic species. (2) A part of chironomids captured underwater was reared to adults in the laboratory. They were kept in water aerated with a pump in tanks. (3) Midges were collected with an emergence trap or a sweeping net on and around waters where they emerged.Quality Control
Scientific names were validated against the Catalogue of the Insects of Japan Vol.8 (Yamamoto and Yamamoto 2014) and the GBIF Backbone Taxonomy.Method steps
- Morphological identification was used to determine the species names of specimens, along with DNA barcoding and ecological observations for a limited number of species. Geographic coordinates and uncertainties were measured using gazetteers such as Google Maps following procedures described in Chapman and Wieczorek (2006). Chironomid specimen records were extracted from the Chironomid DNA Barcode Database and organized into species occurrence data using a MySQL database.
Taxonomic Coverages
-
Ablabesmyiarank: genus
-
Ainuyusurikarank: genus
-
Benthaliarank: genus
-
Biwatendipesrank: genus
-
Brilliarank: genus
-
Bryophaenocladiusrank: genus
-
Cardiocladiusrank: genus
-
Chironomusrank: genus
-
Cladopelmarank: genus
-
Cladotanytarsusrank: genus
-
Compterosmittiarank: genus
-
Conchapelopiarank: genus
-
Corynoneurarank: genus
-
Cricotopusrank: genus
-
Cryptochironomusrank: genus
-
Demicryptochironomusrank: genus
-
Diamesarank: genus
-
Dicrotendipesrank: genus
-
Endochironomusrank: genus
-
Eukiefferiellarank: genus
-
Euryhapsisrank: genus
-
Glyptotendipesrank: genus
-
Harnischiarank: genus
-
Heleniellarank: genus
-
Heterotrissocladiusrank: genus
-
Kiefferulusrank: genus
-
Limnophyesrank: genus
-
Lipiniellarank: genus
-
Metriocnemusrank: genus
-
Microchironomusrank: genus
-
Micropsectrarank: genus
-
Microtendipesrank: genus
-
Nanocladiusrank: genus
-
Neozavreliarank: genus
-
Nilodorumrank: genus
-
Nilotanypusrank: genus
-
Nilothaumarank: genus
-
Orthocladiusrank: genus
-
Parachironomusrank: genus
-
Paracladopelmarank: genus
-
Parakiefferiellarank: genus
-
Paramerinarank: genus
-
Parametriocnemusrank: genus
-
Paraphaenocladiusrank: genus
-
Paratanytarsusrank: genus
-
Paratendipesrank: genus
-
Polypedilumrank: genus
-
Potthastiarank: genus
-
Procladiusrank: genus
-
Prodiamesarank: genus
-
Propsilocerusrank: genus
-
Psectrocladiusrank: genus
-
Psectrotanypusrank: genus
-
Pseudorthocladiusrank: genus
-
Rheocricotopusrank: genus
-
Rheopelopiarank: genus
-
Rheotanytarsusrank: genus
-
Smittiarank: genus
-
Stempellinellarank: genus
-
Stenochironomusrank: genus
-
Stictochironomusrank: genus
-
Synorthocladiusrank: genus
-
Tanypusrank: genus
-
Tanytarsusrank: genus
-
Telmatogetonrank: genus
-
Thienemanniellarank: genus
-
Thienemannimyiarank: genus
-
Trissopelopiarank: genus
-
Tveteniarank: genus
-
Virgatanytarsusrank: genus
-
Yaetanytarsusrank: genus
Geographic Coverages
Japan
Bibliographic Citations
- Chapman, A.D. and Wieczorek, J. (Eds) (2006) Guide to Best Practices for Georeferencing. Global Biodiversity Information Facility, Copenhagen, 90 pp. -
- Yamamoto, M. and Yamamoto, N. (2014) Family Chironomidae. In: Editorial Committee of Catalogue of the Insects of Japan (ed.): Catalogue of the Insects of Japan Vol.8 Diptera. Part 1: Nematocera-Brachycera Aschiza, Touka Shobo, Fukuoka, Japan, pp. 237-362. -
Contacts
Kenzi Takamuraoriginator
position: Visiting researcher
National Institute for Environmental Studies
16-2 Onogawa
Tsukuba
305-8506
Ibaraki
JP
Ryuhei Ueno
originator
position: Senior Researcher
National Institute for Environmental Studies
16-2 Onogawa
Tsukuba
305-8506
Ibaraki
JP
Telephone: +8129-850-2408
email: uenor@nies.go.jp
Natsuko I. Kondo
originator
position: Senior Researcher
National Institute for Environmental Studies
16-2 Onogawa
Tsukuba
305-8506
Ibaraki
JP
Telephone: +8129-850-2860
email: kondo.natsuko@nies.go.jp
Kimio Hirabayashi
originator
position: Professor
Shinshu University
JP
Koichiro Kawai
originator
position: Professor
Hiroshima University
JP
Kenzi Takamura
metadata author
position: Visiting researcher
National Institute for Environmental Studies
16-2 Onogawa
Tsukuba
305-8506
Ibaraki
JP
Kenzi Takamura
content provider
position: Visiting researcher
National Institute for Environmental Studies
16-2 Onogawa
Tsukuba
305-8506
Ibaraki
JP
Ryuhei Ueno
content provider
position: Senior Researcher
National Institute for Environmental Studies
16-2 Onogawa
Tsukuba
305-8506
Ibaraki
JP
Telephone: +8129-850-2408
email: uenor@nies.go.jp
Natsuko I. Kondo
content provider
position: Senior Researcher
National Institute for Environmental Studies
16-2 Onogawa
Tsukuba
305-8506
Ibaraki
JP
Telephone: +8129-850-2860
email: kondo.natsuko@nies.go.jp
Kimio Hirabayashi
content provider
position: Professor
Shinshu University
JP
Koichiro Kawai
content provider
position: Professor
Hiroshima University
JP
Kumiko Totsu
programmer
position: Specialist (Database engineer)
National Institute for Environmental Studies
16-2 Onogawa
Tsukuba
305-8506
Ibaraki
JP
Telephone: +8129-850-2894
email: totsu.kumiko@nies.go.jp
Biodiversity Division
administrative point of contact
National Institute for Environmental Studies
email: biodiv.data@nies.go.jp