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CO1 Amplicon Sequence Variants of bulk arthropod samples (mild lysis) collected with Malaise traps from the Insect Biome Atlas project in Sweden

Dataset homepage

Citation

Miraldo A, Sundh J, Iwaszkiewicz-Eggebrecht E, Granqvist E, Manoharan L, Łukasik P, Tack A J M, Andersson A F, Roslin T, Ronquist F (2025). CO1 Amplicon Sequence Variants of bulk arthropod samples (mild lysis) collected with Malaise traps from the Insect Biome Atlas project in Sweden. Version 1.3. Swedish Museum of Natural History. Occurrence dataset https://doi.org/10.15468/veahzb accessed via GBIF.org on 2025-07-15.

Description

Amplicon Sequence Variants of 418bp of CO1 from mild lysed arthropod community samples collected with Malaise traps from the Insect Biome Atlas project in Sweden, as described in the IBA data paper.

This dataset was published via the SBDI ASV portal, and has been updated from 'Metadata only' to 'Occurrence' type.

Occurrence data were compiled from the following IBA Figshare items:

Processed ASV data from the Insect Biome Atlas Project v3:

  • cleaned_noise_filtered_cluster_taxonomy_SE.tsv.gz
  • spikeins_tax_SE.tsv.gz

Amplicon sequence variants from the Insect Biome Atlas project v6:

  • co1_asv_counts_se.tsv.gz
  • co1_asv_seqs_se.fasta.gz

The following samples were excluded from this resource due to sequencing failure: P23412_1633, P23412_1638, P23412_1641, P23412_1647; or lack of non-zero counts for annotated ASVs: P20863_1580, P23412_1318, P25061_1224, P25061_1440, P25061_1463, P25061_1711, P25061_1734, P25259_1134, P25259_1250.

Sampling Description

Study Extent

Malaise trap locations of the Insect Biome Atlas project in Sweden.

Sampling

Malaise trap samples were collected at all sampling locations of the Insect Biome Atlas project in Sweden (203 Malaise traps in total). Arthropods were collected in individually barcoded bottles pre-filled with 400 mL of 95% ethanol. Malaise traps were active between January and December 2019. Samples were collected every week during spring and summer (March/April to September/October depending on latitude) and monthly or bi-weekly in the autumn and winter (October/November to March/April, depending on latitude). This resulted in 4753 malaise trap samples. Please note that the results presented here correspond only to samples processed using the FAVIS protocol (mild lysis). See 'Malaise trap samples' and 'Mild lysis' extraction in https://doi.org/10.1038/s41597-025-05151-0.

Method steps

  1. See 'Malaise trap samples' and 'Mild lysis' extraction in https://doi.org/10.1038/s41597-025-05151-0.

Taxonomic Coverages

Insects
  1. Symphypleona
    rank: order
  2. Arthropoda
    rank: phylum
  3. Hydrozoa
    rank: class
  4. Psocoptera
    rank: order
  5. Ostracoda
    rank: class
  6. Decapoda
    rank: order
  7. Chromista
    rank: kingdom
  8. Hemiptera
    rank: order
  9. Gadiformes
    rank: order
  10. Sarcoptiformes
    rank: order
  11. Anseriformes
    rank: order
  12. Opiliones
    rank: order
  13. Artiodactyla
    rank: order
  14. Platyhelminthes_X
    rank: class
  15. Clitellata
    rank: class
  16. Gasterosteiformes
    rank: order
  17. Galliformes
    rank: order
  18. Perissodactyla
    rank: order
  19. Passeriformes
    rank: order
  20. Echiniscoidea
    rank: order
  21. Unionida
    rank: order
  22. Annelida
    rank: phylum
  23. Polydesmida
    rank: order
  24. Enchytraeida
    rank: order
  25. Florideophyceae
    rank: class
  26. Lagomorpha
    rank: order
  27. Podocopida
    rank: order
  28. Chordata_X
    rank: class
  29. Arachnida
    rank: class
  30. Chordata
    rank: phylum
  31. Gruiformes
    rank: order
  32. Rhodophyta
    rank: phylum
  33. Aves
    rank: class
  34. Apodiformes
    rank: order
  35. Megaloptera
    rank: order
  36. Siphonaptera
    rank: order
  37. Ceramiales
    rank: order
  38. Julida
    rank: order
  39. Raphidioptera
    rank: order
  40. Bivalvia
    rank: class
  41. Diplopoda
    rank: class
  42. Blattodea
    rank: order
  43. Carnivora
    rank: order
  44. Ixodida
    rank: order
  45. Crassiclitellata
    rank: order
  46. Thysanoptera
    rank: order
  47. Neuroptera
    rank: order
  48. Dermaptera
    rank: order
  49. Salmoniformes
    rank: order
  50. Mammalia
    rank: class
  51. Diplura
    rank: order
  52. Soricomorpha
    rank: order
  53. Anthoathecata
    rank: order
  54. Collembola
    rank: class
  55. Chilopoda
    rank: class
  56. Ephemeroptera
    rank: order
  57. Araneae
    rank: order
  58. Mesostigmata
    rank: order
  59. Plecoptera
    rank: order
  60. Chordeumatida
    rank: order
  61. Tricladida
    rank: order
  62. Anostraca
    rank: order
  63. Tubificida
    rank: order
  64. Oomycota
    rank: phylum
  65. Gastropoda
    rank: class
  66. Amphibia
    rank: class
  67. Lepidoptera
    rank: order
  68. Mollusca
    rank: phylum
  69. Diptera
    rank: order
  70. Peronosporea
    rank: class
  71. Zoraptera
    rank: order
  72. Entomobryomorpha
    rank: order
  73. Chromadorea
    rank: class
  74. Polyxenida
    rank: order
  75. Trichoptera
    rank: order
  76. Enoplea
    rank: class
  77. Dorylaimida
    rank: order
  78. Geophilomorpha
    rank: order
  79. Sphaeriida
    rank: order
  80. Scorpaeniformes
    rank: order
  81. Plantae
    rank: kingdom
  82. Animalia
    rank: kingdom
  83. Pseudoscorpiones
    rank: order
  84. Perciformes
    rank: order
  85. Tardigrada
    rank: phylum
  86. Parachela
    rank: order
  87. Heterotardigrada
    rank: class
  88. Neelipleona
    rank: order
  89. Haplotaxida
    rank: order
  90. Strepsiptera
    rank: order
  91. Anura
    rank: order
  92. Lithobiomorpha
    rank: order
  93. Esociformes
    rank: order
  94. Lumbriculida
    rank: order
  95. Falconiformes
    rank: order
  96. Nematoda
    rank: phylum
  97. Orthoptera
    rank: order
  98. Zygentoma
    rank: order
  99. Accipitriformes
    rank: order
  100. Rhabditida
    rank: order
  101. Coleoptera
    rank: order
  102. Odonata
    rank: order
  103. Columbiformes
    rank: order
  104. Insecta
    rank: class
  105. Charadriiformes
    rank: order
  106. Platyhelminthes
    rank: phylum
  107. Diplura
    rank: class
  108. Cypriniformes
    rank: order
  109. Mecoptera
    rank: order
  110. Hymenoptera
    rank: order
  111. Copepoda
    rank: class
  112. Saprolegniales
    rank: order
  113. Diplostraca
    rank: order
  114. Rodentia
    rank: order
  115. Peronosporales
    rank: order
  116. Psocodea
    rank: order
  117. Trombidiformes
    rank: order
  118. Cyclopoida
    rank: order
  119. Branchiopoda
    rank: class
  120. Clupeiformes
    rank: order
  121. Albuginales
    rank: order
  122. Malacostraca
    rank: class
  123. Stylommatophora
    rank: order
  124. Poduromorpha
    rank: order
  125. Caudata
    rank: order
  126. Phthiraptera
    rank: order
  127. Isopoda
    rank: order
  128. Eutardigrada
    rank: class
  129. Apochela
    rank: order
  130. Cnidaria
    rank: phylum

Geographic Coverages

Sweden

Bibliographic Citations

  1. Miraldo, A., Sundh, J., Iwaszkiewicz-Eggebrecht, E., Buczek, M., Goodsell, R., Johansson, H., Fisher, B. L., Raharinjanahary, D., Rajoelison, E. T., Ranaivo, C., Randrianandrasana, C., Rafanomezantsoa, J.-J., Manoharan, L., Granqvist, E., van Dijk, L. J. A., Alberg, L., Åhlén, D., Aspebo, M., Åström, S., Bellviken, A., Bergman, P.-E., Björklund, S., Björkman, M. P., Deng, J., Desborough, L., Dolff, E., Eliasson, A., Elmquist, H., Emanuelsson, H., Erixon, R., Fahlen, L., Frogner, C., Fürst, P., Grabs, A., Grudd, H., Guasconi, D., Gunnarsson, M., Häggqvist, S., Hed, A., Hörnström, E., Johansson, H., Jönsson, A., Kanerot, S., Karlsson, A., Karlsson, D., Klinth, M., Kraft, T., Lahti, R., Larsson, M., Lernefalk, H., Lestander, Y., Lindholm, L.-T., Lindholm, M., Ljung, U., Ljung, K., Lundberg, J., Lundin, E., Malmenius, M., Marquina, D., Martinelli, J., Mertz, L., Nilsson, J., Patchett, A., Persson, N., Persson, J., Prus-Frankowska, M., Regazzoni, E., Rosander, K.-G., Rydgård, M., Sandblom, C., Skord, J., Stålhandske, T., Svensson, F., Szpryngiel, S., Tajani, K., Tyboni, M., Ugarph, C., Vestermark, L., Vilhelmsson, J., Wahlgren, N., Wass, A., Wetterstrand, P., Łukasik, P., Tack, A. J. M., Andersson, A. F., Roslin, T., & Ronquist, F. (2024). Data of the Insect Biome Atlas: a metabarcoding survey of the terrestrial arthropods of Sweden and Madagascar. Sci Data 12, 835 (2025). - https://doi.org/10.1038/s41597-025-05151-0

Contacts

Andreia Miraldo
originator
position: Researcher
Swedish Museum of Natural History
Stockholm
SE
email: andreia.miraldo@gmail.com
userId: https://orcid.org/0000-0001-6107-006X
John Sundh
originator
Stockholm University
Stockholm
SE
Elzbieta Iwaszkiewicz-Eggebrecht
originator
Swedish Museum of Natural History
Stockholm
SE
userId: https://orcid.org/0000-0003-1412-1711
Emma Granqvist
originator
Swedish Museum of Natural History
Stockholm
SE
userId: https://orcid.org/0000-0002-1513-1674
Lokeshwaran Manoharan
originator
Lund University
Lund
SE
userId: https://orcid.org/0000-0001-9751-5745
Piotr Łukasik
originator
Jagiellonian University
Kraków
PL
userId: https://orcid.org/0000-0002-4164-6487
Ayco J. M. Tack
originator
Stockholm University,
Stockholm
SE
userId: https://orcid.org/0000-0002-3550-1070
Anders F. Andersson
originator
KTH Royal Institute of Technology
Stockholm
SE
userId: https://orcid.org/0000-0002-3627-6899
Tomas Roslin
originator
Swedish University of Agricultural Sciences (SLU)
Uppsala
SE
userId: https://orcid.org/0000-0002-2957-4791
Fredrik Ronquist
originator
position: Professor
Swedish Museum of Natural History
SE
email: fredrik.ronquist@nrm.se
userId: https://orcid.org/000-0002-3929-251X
Fredrik Ronquist
administrative point of contact
position: Professor
Swedish Museum of Natural History
SE
email: fredrik.ronquist@nrm.se
userId: https://orcid.org/000-0002-3929-251X
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