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Código de barras genético de cinco grupos críticos de la flora de México

Dataset homepage

Citation

Gernandt D, Ramos Rivera P (2017). Código de barras genético de cinco grupos críticos de la flora de México. Version 1.3. Comisión nacional para el conocimiento y uso de la biodiversidad. Occurrence Dataset https://doi.org/10.15468/au5bgj accessed via GBIF.org on 2017-10-21.

Description

Los códigos de barras genéticos consisten en secuencias cortas y estandarizadas de DNA que permiten la identificación de las especies de organismos conocidas y el descubrimiento de especies desconocidas. A diferencia de muchos animales (y otros eucariontes) para los que el gen mitocondrial CO1 es fácil de secuenciar y altamente informativo, las plantas terrestres presentan problemas particulares para la selección de un código de barras. Esto se debe a la baja tasa de substitución y la frecuencia de rearreglos del genoma mitocondrial. También existen problemas debidos a poliploidía y paralogía en los genes nucleares. Aunque existe consenso en que el genoma del cloroplasto es la fuente más prometedora de códigos de barras genéticos para plantas, la tasa de evolución relativamente baja de muchos genes de plástidos hace necesaria la concatenación de varias secuencias para incrementar la resolución. En este proyecto se generarán códigos de barras de DNA de cloroplasto de 319 ejemplares de c. 170 especies pertenecientes a nueve familias de plantas vasculares de gran relevancia biológica, ecológica, económica y cultural en México, incluyendo Agavaceae, Cactaceae, Crassulaceae, Cupressaceae, Orchidaceae, Pinaceae, Podocarpaceae y Taxaceae. En la selección de los grupos de estudio se priorizaron los taxones listados en la Norma Oficial Mexicana NOM-059-ECOL-2001. Los códigos propuestos consistirán de secuencias concatenadas de cuatro regiones en total. Candidatos por evaluar incluyen las regiones codificantes de los genes matK, rbcL y rpoC1, y los espaciadores intergénicos trnH-psbA, psbK-psbI y dos más hipervariables por definir en el curso de este estudio.

Reino: 1 Filo: 3 Clase: 4 Orden: 7 Familia: 9 Género: 73 Especie: 226 Infraespecie: 8

Taxonomic Coverages

Reino: Plantae Filo: Magnoliophyta, Coniferophyta, Gnetophyta Clase: Gnetopsida, Magnoliopsida, Pinopsida, Liliopsida Orden: Ephedrales, Asparagales, Rosales, Cupressales, Caryophyllales, Pinales, Liliales Familia: Taxaceae, Agavaceae, Podocarpaceae, Crassulaceae, Cupressaceae, Cactaceae, Pinaceae, Orchidaceae, Ephedraceae
  1. Plantae
    rank: kingdom
  2. Magnoliophyta
    rank: phylum
  3. Coniferophyta
    rank: phylum
  4. Gnetophyta
    rank: phylum
  5. Liliopsida
    rank: class
  6. Pinopsida
    rank: class
  7. Magnoliopsida
    rank: class
  8. Gnetopsida
    rank: class
  9. Liliales
    rank: order
  10. Pinales
    rank: order
  11. Caryophyllales
    rank: order
  12. Cupressales
    rank: order
  13. Rosales
    rank: order
  14. Asparagales
    rank: order
  15. Ephedrales
    rank: order
  16. Orchidaceae
    rank: family
  17. Pinaceae
    rank: family
  18. Cactaceae
    rank: family
  19. Cupressaceae
    rank: family
  20. Crassulaceae
    rank: family
  21. Podocarpaceae
    rank: family
  22. Agavaceae
    rank: family
  23. Taxaceae
    rank: family
  24. Ephedraceae
    rank: family
  25. Oncidium
    rank: genus
  26. Pinus
    rank: genus
  27. Ariocarpus
    rank: genus
  28. Corallorhiza
    rank: genus
  29. Laelia
    rank: genus
  30. Mammillaria
    rank: genus
  31. Juniperus
    rank: genus
  32. Cypripedium
    rank: genus
  33. Echinocereus
    rank: genus
  34. Rhynchostele
    rank: genus
  35. Cochemiea
    rank: genus
  36. Eurystyles
    rank: genus
  37. Prosthechea
    rank: genus
  38. Aporocactus
    rank: genus
  39. Trichopilia
    rank: genus
  40. Picea
    rank: genus
  41. Cyrtochiloides
    rank: genus
  42. Coelia
    rank: genus
  43. Encyclia
    rank: genus
  44. Lycaste
    rank: genus
  45. Echeveria
    rank: genus
  46. Pseudogoodyera
    rank: genus
  47. Turbinicarpus
    rank: genus
  48. Podocarpus
    rank: genus
  49. Abies
    rank: genus
  50. Clowesia
    rank: genus
  51. Lophophora
    rank: genus
  52. Galeoglossum
    rank: genus
  53. Coryphantha
    rank: genus
  54. Taxodium
    rank: genus
  55. Lepanthes
    rank: genus
  56. Agave
    rank: genus
  57. Yucca
    rank: genus
  58. Furcraea
    rank: genus
  59. Beschorneria
    rank: genus
  60. Sedum
    rank: genus
  61. Manfreda
    rank: genus
  62. Sobralia
    rank: genus
  63. Polianthes
    rank: genus
  64. Graptopetalum
    rank: genus
  65. Galeandra
    rank: genus
  66. Papperitzia
    rank: genus
  67. Helleriella
    rank: genus
  68. Acharagma
    rank: genus
  69. Tacitus
    rank: genus
  70. Aztekium
    rank: genus
  71. Obregonia
    rank: genus
  72. Phragmipedium
    rank: genus
  73. Astrophytum
    rank: genus
  74. Geohintonia
    rank: genus
  75. Mormodes
    rank: genus
  76. Echinocactus
    rank: genus
  77. Plectrophora
    rank: genus
  78. Rossioglossum
    rank: genus
  79. Echinomastus
    rank: genus
  80. Pseudotsuga
    rank: genus
  81. Sigmatostalix
    rank: genus
  82. Epidendrum
    rank: genus
  83. Masdevallia
    rank: genus
  84. Pelecyphora
    rank: genus
  85. Vanilla
    rank: genus
  86. Cumarinia
    rank: genus
  87. Taxus
    rank: genus
  88. Callitropsis
    rank: genus
  89. Ortegocactus
    rank: genus
  90. Thelocactus
    rank: genus
  91. Epithelantha
    rank: genus
  92. Bletia
    rank: genus
  93. Calocedrus
    rank: genus
  94. Ephedra
    rank: genus
  95. Mexipedium
    rank: genus
  96. Pelexia
    rank: genus
  97. Cuitlauzina
    rank: genus
  98. Oncidium suttonii
    rank: species
  99. Pinus johannis
    common name: pino rank: species
  100. Ariocarpus kotschoubeyanus
    common name: deer foot cactus rank: species
  101. Corallorhiza bulbosa
    rank: species
  102. Laelia superbiens
    common name: tanal rank: species
  103. Corallorhiza odontorrhiza
    rank: species
  104. Mammillaria longimamma
    common name: long nipple cactus rank: species
  105. Juniperus monticola
    common name: tláscal rank: species
  106. Cypripedium molle
    rank: species
  107. Echinocereus poselgeri
    common name: zocoxóchitl rank: species
  108. Pinus contorta
    common name: pino de San Pedro Mártir rank: species
  109. Rhynchostele aptera
    rank: species
  110. Mammillaria huitzilopochtli
    common name: sun and war god cactus rank: species
  111. Cochemiea halei
    common name: hale cactus rank: species
  112. Mammillaria crucigera
    common name: cross spine cactus rank: species
  113. Laelia speciosa
    common name: juritzquiri-tzitzica rank: species
  114. Eurystyles borealis
    rank: species
  115. Prosthechea karwinskii
    rank: species
  116. Aporocactus flagelliformis
    common name: kanchoch rank: species
  117. Trichopilia tortilis
    rank: species
  118. Picea chihuahuana
    common name: pinabeto rank: species
  119. Mammillaria dixanthocentron
    common name: biznaga dos espinas amarillas rank: species
  120. Cyrtochiloides ochmatochila
    rank: species
  121. Pinus jeffreyi
    common name: pino rank: species
  122. Pinus devoniana
    common name: tsihirén rank: species
  123. Rhynchostele cervantesii
    common name: mariposa rank: species
  124. Coelia densiflora
    rank: species
  125. Encyclia adenocaula
    common name: trompillo rank: species
  126. Prosthechea citrina
    common name: aróracua rank: species
  127. Lycaste crinita
    rank: species
  128. Mammillaria napina
    common name: chilitos rank: species
  129. Echeveria setosa
    rank: species
  130. Pseudogoodyera pseudogoodyeroides
    rank: species
  131. Lycaste aromatica
    rank: species
  132. Ariocarpus trigonus
    common name: chautle rank: species
  133. Turbinicarpus beguinii
    common name: plateada rank: species
  134. Podocarpus matudae
    common name: tabla rank: species
  135. Eurystyles auriculata
    rank: species
  136. Echinocereus adustus
    common name: cosihuiriachic hedgehog cactus rank: species
  137. Abies hidalgensis
    common name: oyamel rank: species
  138. Rhynchostele candidula
    rank: species
  139. Pinus flexilis
    common name: pino prieto rank: species
  140. Clowesia thylaciochila
    rank: species
  141. Prosthechea vitellina
    common name: toalxóchitl rank: species
  142. Lophophora williamsii
    common name: camaba rank: species
  143. Mammillaria theresae
    common name: coneto cactus rank: species
  144. Pinus quadrifolia
    common name: piñón bueno rank: species
  145. Ariocarpus fissuratus
    common name: sunami rank: species
  146. Cypripedium irapeanum
    common name: pisahuastle rank: species
  147. Galeoglossum cactorum
    rank: species
  148. Coryphantha delicata
    common name: jaumave cory cactus rank: species
  149. Taxodium mucronatum
    common name: sabino rank: species
  150. Lepanthes tenuiloba
    rank: species
  151. Juniperus flaccida
    common name: cedro rank: species
  152. Abies vejarii
    common name: oyamel blanco rank: species
  153. Agave vizcainoensis
    common name: maguey de El Vizcaíno rank: species
  154. Yucca lacandonica
    common name: yucca trepadora rank: species
  155. Echeveria longissima
    rank: species
  156. Furcraea macdougallii
    common name: maguey de pescadillo rank: species
  157. Beschorneria calcicola
    common name: ahuimo mixteco rank: species
  158. Agave ellemeetiana
    common name: maguey rank: species
  159. Furcraea guatemalensis
    common name: ojoyó rank: species
  160. Sedum tortuosum
    common name: siempre viva rank: species
  161. Agave striata
    common name: peinecillo rank: species
  162. Manfreda nanchititlensis
    common name: amole de nanchititla rank: species
  163. Manfreda guttata
    common name: amole rank: species
  164. Agave chiapensis
    common name: maguey rank: species
  165. Manfreda longiflora
    common name: huaco rank: species
  166. Galeoglossum thysanochilum
    rank: species
  167. Yucca queretaroensis
    common name: izote estoquillo rank: species
  168. Furcraea pubescens
    common name: cahum rank: species
  169. Echeveria derenbergii
    rank: species
  170. Sobralia macdougallii
    rank: species
  171. Agave parviflora
    common name: taiehcholi rank: species
  172. Beschorneria rigida
    rank: species
  173. Polianthes longiflora
    common name: nardo fragante rank: species
  174. Agave nizandensis
    common name: maguey de Nizanda rank: species
  175. Graptopetalum macdougallii
    rank: species
  176. Agave titanota
    common name: maguey rank: species
  177. Furcraea martinezii
    rank: species
  178. Galeandra greenwoodiana
    rank: species
  179. Sedum torulosum
    rank: species
  180. Laelia crawshayana
    rank: species
  181. Echeveria coccinea
    rank: species
  182. Clowesia rosea
    common name: clowesia rosada rank: species
  183. Manfreda pubescens
    rank: species
  184. Papperitzia leiboldii
    common name: papperitzia de Leibold rank: species
  185. Helleriella nicaraguensis
    rank: species
  186. Echeveria kimnachii
    rank: species
  187. Sedum craigii
    rank: species
  188. Agave victoriae-reginae
    common name: pintilla rank: species
  189. Acharagma aguirreanum
    common name: Aguirre’s cactus rank: species
  190. Yucca filifera
    common name: palma rank: species
  191. Tacitus bellus
    rank: species
  192. Agave petrophila
    common name: maguey rank: species
  193. Mammillaria candida
    rank: species
  194. Agave guiengola
    common name: maguey plateado rank: species
  195. Agave polianthiflora
    common name: tarechuri rank: species
  196. Echeveria amphoralis
    rank: species
  197. Echeveria elegans
    rank: species
  198. Manfreda potosina
    common name: amole cenizo rank: species
  199. Manfreda maculata
    common name: xix kij rank: species
  200. Polianthes graminifolia
    rank: species
  201. Agave stricta
    common name: maguey rank: species
  202. Furcraea longaeva
    common name: pescadillo rank: species
  203. Sedum suaveolens
    common name: little white dots rank: species
  204. Corallorhiza macrantha
    rank: species
  205. Polianthes howardii
    common name: nardo multicolor rank: species
  206. Aztekium hintonii
    common name: hinton cactus rank: species
  207. Echeveria laui
    rank: species
  208. Oncidium incurvum
    common name: oncidium violeta rank: species
  209. Obregonia denegrii
    common name: obregon cactus rank: species
  210. Manfreda variegata
    rank: species
  211. Phragmipedium exstaminodium
    common name: tanal de bigotes rank: species
  212. Yucca carnerosana
    common name: palma rank: species
  213. Astrophytum caput-medusae
    rank: species
  214. Agave bracteosa
    common name: maguey araña rank: species
  215. Echeveria globulosa
    rank: species
  216. Yucca mixtecana
    rank: species
  217. Furcraea parmentieri
    rank: species
  218. Agave lurida
    common name: maguey rank: species
  219. Oncidium poikilostalix
    common name: sigmatostalix guatemalteco rank: species
  220. Graptopetalum saxifragoides
    rank: species
  221. Sedum frutescens
    common name: siempreviva rank: species
  222. Geohintonia mexicana
    common name: hinton cactus rank: species
  223. Graptopetalum grande
    rank: species
  224. Mormodes nagelii
    rank: species
  225. Sedum platyphyllum
    rank: species
  226. Echinocereus delaetii
    common name: hairbrush short cactus rank: species
  227. Echeveria purpusorum
    rank: species
  228. Agave dasylirioides
    common name: maguey intrépido rank: species
  229. Echeveria secunda
    common name: maguey de rosa rank: species
  230. Echinocactus grusonii
    common name: asiento de suegra rank: species
  231. Ariocarpus retusus
    common name: wild peyote rank: species
  232. Echeveria shaviana
    rank: species
  233. Oncidium ornithorhynchum
    common name: lirio rank: species
  234. Beschorneria tubiflora
    common name: lirio de monte rank: species
  235. Phragmipedium humboldtii
    rank: species
  236. Plectrophora alata
    rank: species
  237. Graptopetalum fruticosum
    common name: siempreviva rank: species
  238. Echeveria moranii
    rank: species
  239. Rossioglossum williamsianum
    common name: odontoglossum de Williams rank: species
  240. Echinocactus platyacanthus
    common name: bizmaga burra rank: species
  241. Echinomastus unguispinus
    rank: species
  242. Oncidium suave
    rank: species
  243. Oncidium oliganthum
    rank: species
  244. Sigmatostalix mexicana
    common name: sigmatostalix mexicano rank: species
  245. Corallorhiza striata
    rank: species
  246. Corallorhiza maculata
    rank: species
  247. Epidendrum lowilliamsii
    rank: species
  248. Oncidium sotoanum
    rank: species
  249. Masdevallia tuerckheimii
    rank: species
  250. Laelia furfuracea
    common name: lirio rank: species
  251. Oncidium pollardii
    common name: oncidium de Pollard rank: species
  252. Galeoglossum tubulosum
    rank: species
  253. Pelecyphora strobiliformis
    common name: scaly little peyote rank: species
  254. Pinus muricata
    common name: pino peninsular rank: species
  255. Laelia anceps
    common name: flor de todos los santos rank: species
  256. Rhynchostele stellata
    rank: species
  257. Vanilla pompona
    common name: segne-xeute rank: species
  258. Echinocereus schmollii
    common name: lamb tail cactus rank: species
  259. Pinus nelsonii
    common name: piñón duro rank: species
  260. Cumarinia odorata
    common name: fragrant cory cactus rank: species
  261. Mammillaria sanchez-mejoradae
    rank: species
  262. Echinocactus parryi
    common name: lago guzman barrel cactus rank: species
  263. Rossioglossum splendens
    common name: odontoglossum splendens rank: species
  264. Taxus globosa
    common name: palmira rank: species
  265. Pseudotsuga menziesii
    common name: hallarin rank: species
  266. Prosthechea brassavolae
    rank: species
  267. Ariocarpus agavioides
    common name: little agave rank: species
  268. Callitropsis forbesii
    common name: ciprés Guadalupe rank: species
  269. Mormodes sotoana
    common name: mormodes de Soto rank: species
  270. Juniperus deppeana
    common name: aorí rank: species
  271. Pinus maximartinezii
    common name: piñón rank: species
  272. Ortegocactus macdougallii
    common name: chico ortega cactus rank: species
  273. Echinocereus leucanthus
    common name: white flowered cereus rank: species
  274. Pinus cembroides
    common name: cembroides rank: species
  275. Ariocarpus scaphirostris
    common name: rabbit ear cactus rank: species
  276. Abies concolor
    common name: pinabete rank: species
  277. Thelocactus hastifer
    common name: hastated cactus rank: species
  278. Echinocereus pensilis
    common name: snake hedgehog cactus rank: species
  279. Pinus lagunae
    common name: piñón de la Laguna rank: species
  280. Mammillaria varieaculeata
    common name: biznaga de espinas variables rank: species
  281. Pinus remota
    common name: encino rank: species
  282. Epithelantha micromeris
    common name: button cactus rank: species
  283. Mormodes pardalinata
    rank: species
  284. Laelia gouldiana
    common name: santorum rank: species
  285. Bletia urbana
    common name: bletia urbana rank: species
  286. Helleriella guerrerensis
    rank: species
  287. Pinus attenuata
    common name: pino rank: species
  288. Clowesia warczewitzii
    rank: species
  289. Aztekium ritteri
    common name: ritter cactus rank: species
  290. Abies hickelii
    common name: oyamel rank: species
  291. Calocedrus decurrens
    common name: zopilote rank: species
  292. Mormodes luxata
    rank: species
  293. Pinus pinceana
    common name: piñón rank: species
  294. Pinus radiata
    common name: pino rank: species
  295. Echinocereus subinermis
    common name: hairless hedgehog cactus rank: species
  296. Ephedra compacta
    common name: tepopote rank: species
  297. Callitropsis lusitanica
    common name: tlazcán rank: species
  298. Mexipedium xerophyticum
    rank: species
  299. Echinocereus laui
    common name: lau hedgehog cactus rank: species
  300. Mammillaria plumosa
    common name: feather cactus rank: species
  301. Rhynchostele rossii
    common name: odontoglossum de Ross rank: species
  302. Rhynchostele cordatum
    rank: species
  303. Prosthechea chondylobulbon
    rank: species
  304. Vanilla parviflora
    rank: species
  305. Prosthechea pseudopygmaea
    rank: species
  306. Epidendrum parkinsonianum
    common name: pata de paloma rank: species
  307. Pelexia funckiana
    common name: spiranthes congesta rank: species
  308. Cuitlauzina pendula
    common name: Espiritu Santo rank: species
  309. Oncidium sphacelatum
    common name: xk'ubemba rank: species
  310. Prosthechea cochleata
    common name: pultpito rank: species
  311. Epidendrum raniferum
    common name: mointez tz'eman rank: species
  312. Galeandra batemanii
    common name: galeandra de Bateman rank: species
  313. Oncidium unguiculatum
    common name: oncidium de uña rank: species
  314. Pinus coulteri
    common name: pino piña rank: species
  315. Mammillaria halei
    common name: hale cactus rank: species
  316. Rhynchostele madrensis
    common name: odontoglossum de la Sierra Madre rank: species
  317. Rhynchostele maculata
    rank: species
  318. Trichopilia galeottiana
    common name: trichopilia amarilla rank: species
  319. Pinus rzedowskii
    common name: pino de Coalcomán rank: species
  320. Coelia macrostachya
    rank: species
  321. Epidendrum dorsocarinatum
    common name: epidendrum quillado rank: species
  322. Mammillaria pondii
    common name: bristle spine cactus rank: species
  323. Echinocereus longisetus
    common name: hairbrush short cactus rank: species
  324. Echeveria setosa var. deminuta
    rank: infraspecificname
  325. Echeveria setosa var. minor
    rank: infraspecificname
  326. Echeveria setosa var. oteroi
    rank: infraspecificname
  327. Mammillaria pondii subsp. setispina
    common name: bristle spine cactus rank: infraspecificname
  328. Pseudotsuga menziesii var. glauca
    common name: cahuite rank: infraspecificname
  329. Pinus cembroides subsp. orizabensis
    common name: pino rank: infraspecificname
  330. Echinocereus longisetus subsp. delaetii
    common name: hairbrush short cactus rank: infraspecificname
  331. Pinus contorta var. murrayana
    common name: pino de San Pedro Mártir rank: infraspecificname

Geographic Coverages

País: BRASIL (SAO PAULO) País: EL SALVADOR (CHALATENANGO, SANTA ANA, SONSONATE) País: ESTADOS UNIDOS DE AMERICA (OREGON) País: GUATEMALA (ALTA VERAPAZ, GUATEMALA, SONSONATE) País: MÉXICO (AGUASCALIENTES, BAJA CALIFORNIA, BAJA CALIFORNIA SUR, CHIAPAS, CHIHUAHUA, COAHUILA DE ZARAGOZA, COLIMA, DISTRITO FEDERAL, DURANGO, GUANAJUATO, GUERRERO, HIDALGO, JALISCO, MÉXICO, MICHOACAN DE OCAMPO, MORELOS, NAYARIT, NUEVO LEON, OAXACA, PUEBLA, QUERETARO DE ARTEAGA, SAN LUIS POTOSI, SINALOA, SONORA, TAMAULIPAS, TLAXCALA, VERACRUZ DE IGNACIO DE LA LLAVE, ZACATECAS)

Bibliographic Citations

Contacts

David Gernandt
originator
position: Responsable
Universidad Nacional Autónoma de México . Instituto de Biología
México
04510
Distrito Federal
MX
Telephone: 5622 9065,
email: dgernandt@ib.unam.mx
Patricia Ramos Rivera
metadata author
position: Directora General de Sistemas
Comisión Nacional para el Conocimiento y Uso de la Biodiversidad
Liga Periférico-Insurgentes Sur No. 4903, Col. Parques del Pedregal
MÉXICO
14010
Tlalpan
MX
Telephone: 50045000
email: pramos@conabio.gob.mx
homepage: https://www.gob.mx/conabio
Sonia Alejandra Careaga Olvera
administrative point of contact
position: Subcoordinadora en Información y Análisis
Comisión Nacional para el Conocimiento y Uso de la Biodiversidad
Liga Periférico-Insurgentes Sur No. 4903, Col. Parques del Pedregal
México
14010
Tlalpan
MX
Telephone: 50045000
email: scareaga@conabio.gob.mx
homepage: https://www.gob.mx/conabio
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