Bird tracking - GPS tracking of Lesse…

Occurrence dataset published by Research Institute for Nature and Forest (INBO)

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Summary

Full Title

Bird tracking - GPS tracking of Lesser Black-backed Gulls and Herring Gulls breeding at the southern North Sea coast

Description

Bird tracking - GPS tracking of Lesser Black-backed Gulls and Herring Gulls breeding at the southern North Sea coast is a species occurrence dataset published by the Research Institute for Nature and Forest (INBO) and described in Stienen et al. 2016 (http://doi.org/10.3897/zookeys.555.6173) The dataset contains close to 2.5 million occurrences, recorded by 101 GPS trackers mounted on 75 Lesser Black-backed Gulls and 26 Herring Gulls breeding at the Belgian and Dutch coast (see https://inbo.cartodb.com/u/lifewatch/viz/da04f120-ea70-11e4-a3f2-0e853d047bba/public_map for a visualization of the data). The trackers were developed by the University of Amsterdam Bird Tracking System (UvA-BiTS, http://www.uva-bits.nl). These automatically record and transmit bird movements, which allows us and others to study their habitat use and migration behaviour in great detail. Our bird tracking network is operational since 2013. It is funded for LifeWatch by the Hercules Foundation and maintained in collaboration with UvA-BiTS and the Flanders Marine Institute (VLIZ). The recorded data are periodically released in bulk as open data (http://dataset.inbo.be/bird-tracking-gull-occurrences), and are also accessible through CartoDB and the Global Biodiversity Information Facility (GBIF, http://doi.org/10.15468/02omly). See the dataset metadata for contact information, scope and methodology. Issues with the dataset can be reported at https://github.com/LifeWatchINBO/data-publication/tree/master/datasets/bird-tracking-gull-occurrences

Purpose

As part of our terrestrial and marine observatory for LifeWatch (http://lifewatch.inbo.be), the Research Institute for Nature and Forest (INBO), the Flanders Marine Institute (VLIZ), Ghent University (UGent), and University of Antwerp (UA) are tracking large gull species with lightweight, solar powered GPS trackers. The project builds upon the extensive knowledge the INBO has acquired over the last 15 years when studying in particular postnuptial migration, as well as mate and site fidelity of large gulls, by means of sightings of colour-marked individuals ringed in Belgium and via individual-based life-history studies by UGent and UA. The data collected through this bird tracking network allows to study the migration patterns and habitat use of the gulls in more detail. Furthermore, they are no longer biased towards locations where observers can see colour-ringed birds. To allow greater use of the data beyond our research questions, all data are published as open data.

Additional Information

To allow anyone to use this dataset, we have released the data to the public domain under a Creative Commons Zero waiver (http://creativecommons.org/publicdomain/zero/1.0/). We would appreciate however, if you read and follow these norms for data use (http://www.inbo.be/en/norms-for-data-use) and provide a link to the original dataset (http://doi.org/10.15468/02omly) whenever possible. If you use these data for a scientific paper, please cite the dataset following the applicable citation norms and/or consider us for co-authorship. We are always interested to know how you have used or visualized the data, or to provide more information, so please contact us via the contact information provided in the metadata, opendata@inbo.be or https://twitter.com/LifeWatchINBO. The following information is not included in this dataset and available upon request: outliers, temperature, speed, accelerometer data, GPS metadata (fix time, number of satellites used, vertical accuracy), bird biometrics data measured during tagging (bill length, bill depth, tarsus length, wing length, body mass), life history data (day of ringing, age, resightings by volunteers), as well as growth data of chicks. All our public bird tracking data are also available through CartoDB (https://inbo.cartodb.com/u/lifewatch), where users can query the data using SQL via the CartoDB API or download these in various formats (csv, shp, kml, svg, and geosjon). Two tables are of use: bird_tracking, containing all occurrence data and bird_tracking_devices, containing information on the GPS trackers and individual birds. Note that these tables are not standardized to Darwin Core, contain flagged outliers (omitted from the standardized dataset) and include data from other bird species. For more info, see https://github.com/LifeWatchINBO/bird-tracking/blob/master/cartodb/README.md

Temporal coverages

Date range: May 17, 2013 - Sep 2, 2015

Living time period: breeding season 2013

Living time period: migration/wintering season 2013-2014

Living time period: breeding season 2014

Living time period: migration/wintering season 2014-2015

Living time period: breeding season 2015

Language of Metadata

ENGLISH

Language of Data

ENGLISH

Administrative contact
Peter Desmet
LifeWatch team coordinator
Research Institute for Nature and Forest (INBO) Kliniekstraat 25 1070 Brussels Brussels Capital Region Belgium
Metadata author
Peter Desmet
LifeWatch team coordinator
Research Institute for Nature and Forest (INBO) Kliniekstraat 25 1070 Brussels Brussels Capital Region Belgium
Originator
Luc Lens
Director
Terrestrial Ecology Unit (TEREC) Terrestrial Ecology Unit (TEREC) 9000 Ghent East Flanders Belgium

doi:10.15468/02omly

Published by

Research Institute for Nature and Forest (INBO)

Publication Date

Jan 19, 2016

Registration Date

Jul 17, 2014

Served by

INBO IPT

Links

Alternative Identifiers

External Data

Metadata Documents

2,485,400 Georeferenced data

View records

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Description

The tracked birds breed at the southern North Sea coast in three colonies, located in the ports of Zeebrugge (Belgium), Ostend (more

About

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Other Contacts

Administrative contact
Eric W.M. Stienen
Senior scientist
Research Institute for Nature and Forest (INBO) Kliniekstraat 25 1070 Brussels Brussels Capital Region Belgium
Metadata author
Eric W.M. Stienen
Senior scientist
Research Institute for Nature and Forest (INBO) Kliniekstraat 25 1070 Brussels Brussels Capital Region Belgium
Originator
Alejandro Sotillo
Scientist
Terrestrial Ecology Unit (TEREC) Ghent University, K.L. Ledeganckstraat 35 9000 Ghent East Flanders Belgium
Originator
Hans Matheve
Technical assistant
Terrestrial Ecology Unit (TEREC) Ghent University, K.L. Ledeganckstraat 35 9000 Ghent East Flanders Belgium
Originator
David Herman
Technical assistant
Terrestrial Ecology Unit (TEREC) Ghent University, K.L. Ledeganckstraat 35 9000 Ghent East Flanders Belgium
Originator
Wendt Müller
Assistant professor
Ethology (ETHO) University of Antwerp, Universiteitsplein 1 2610 Antwerp Antwerp Belgium
Originator
Marwa M. Kavelaars
Scientist
Ethology (ETHO) University of Antwerp, Universiteitsplein 1 2610 Antwerp Antwerp Belgium
Originator
Roland-Jan Buijs
Scientist
Buijs Eco Consult B.V. Philips van Dorpstraat 49 4698 RV Oud-Vossemeer Zeeland Netherlands
Originator
Willem Bouten
Chair of Computational Geo-Ecology
Institute for Biodiversity and Ecosystem Dynamics (IBED) University of Amsterdam, Science Park 904 1098 XH Amsterdam North Holland Netherlands
Originator
Bart Vanhoorne
Senior developer
Flanders Marine Institute (VLIZ) Wandelaarkaai 7 8400 Ostend West Flanders Belgium
Originator
Robin Houthoofdt
Developer
Flanders Marine Institute (VLIZ) Wandelaarkaai 7 8400 Ostend West Flanders Belgium
Originator
Francisco Hernandez
Data centre manager
Flanders Marine Institute (VLIZ) Wandelaarkaai 7 8400 Ostend West Flanders Belgium
Originator
Klaas Deneudt
Data centre project manager
Flanders Marine Institute (VLIZ) Wandelaarkaai 7 8400 Ostend West Flanders Belgium
Originator
Marc Van de walle
Technical assistant
Research Institute for Nature and Forest (INBO) Kliniekstraat 25 1070 Brussels Brussels Capital Region Belgium
Originator
Hilbran Verstraete
Scientist
Research Institute for Nature and Forest (INBO) Kliniekstraat 25 1070 Brussels Brussels Capital Region Belgium
Originator
Nicolas Vanermen
Scientist
Research Institute for Nature and Forest (INBO) Kliniekstraat 25 1070 Brussels Brussels Capital Region Belgium
Originator
Simon Feys
Technical assistant
Research Institute for Nature and Forest (INBO) Kliniekstraat 25 1070 Brussels Brussels Capital Region Belgium
Originator
Wouter Courtens
Senior scientist
Research Institute for Nature and Forest (INBO) Kliniekstraat 25 1070 Brussels Brussels Capital Region Belgium
Originator
Bart Aelterman
LifeWatch data scientist
Research Institute for Nature and Forest (INBO) Kliniekstraat 25 1070 Brussels Brussels Capital Region Belgium
Originator
Peter Desmet
LifeWatch team coordinator
Research Institute for Nature and Forest (INBO) Kliniekstraat 25 1070 Brussels Brussels Capital Region Belgium
Originator
Eric W.M. Stienen
Senior scientist
Research Institute for Nature and Forest (INBO) Kliniekstraat 25 1070 Brussels Brussels Capital Region Belgium

Taxonomic Coverage

The dataset contains tracking data from 75 Lesser Black-Backed Gulls (Larus fuscus) and 26 Herring Gulls (Larus argentatus) breeding at the Belgian and Dutch coast.

KINGDOM
Animalia (animals)
PHYLUM
Chordata
CLASS
Aves (birds)
ORDER
Charadriiformes
FAMILY
Laridae (gulls)
GENUS
Larus
SPECIES
Larus fuscus (Lesser Black-backed Gull), Larus argentatus (Herring Gull)

Methodology

Study extent

The birds were trapped and tagged at or near their breeding colony at the southern North Sea coast. The colony of Zeebrugge is situated in the western part of the port (51.341 latitude, 3.182 longitude) at sites that are not used for port activities and on rooftops. The first Herring Gulls (HG) nested here in 1987, followed by the first breeding record of Lesser Black-backed Gull (LBBG) in 1991. In the 1990s, the number of breeding pairs strongly increased, with a maximum of 2,336 pairs of HG and 4,760 pairs of LBBG in 2011 (Stienen et al. 2015). Maximum numbers amounted to 2.6% and 1.2% of the biogeographic populations of LBBG and HG (Wetlands International 2015). After 2011 the number of gulls strongly declined due to habitat loss and the presence of foxes (Vulpes vulpes). In the period 2000-2010, Zeebrugge hosted on average 91% of all large gulls in Belgium. This proportion decreased to 33% in 2015 (Stienen et al. 2015). In the colony of Ostend (51.233 latitude, 2.931 longitude), breeding started in 1993. Here the the numbers of breeding pairs are still increasing with a maximum of 505 pairs of HG and 551 pairs of LBBG in 2015 (data INBO). In Ostend most gulls breed on rooftops both in industrial areas and in the town itself. The colony of Vlissingen-Oost also know as “Sloegebied” (51.450 latitude, 3.689 longitude) is located in the industrial port area near Vlissingen. Here the gulls nest on the grassy grounds that are not yet in use for port activities. LBBG started breeding in 1984, and the area is now the second biggest colony of LBBG in the southwestern part of the Netherlands. The numbers of breeding pairs increased from a few hundred in the second part of the nineties to 5,220 pairs in 2011. HG started breeding in 1977 (5-10 pairs) with a maximum of 4,353 pairs in 2008 (Strucker et al. 2013). In 2014 the colony hosted 4,460 pairs of LBBG and 2,276 pairs of HG (Strucker et al. 2015). The number of tagged birds and their trap location per year are: * 2013: 5 HG nesting on the roof of the Vismijn in Ostend and 22 LBBG nesting in the port of Zeebrugge. * 2014: 8 HB nesting on the roof of the Vismijn in Ostend, 1 HG and 24 LBBG nesting in the port of Zeebrugge, and 3 HG feeding on the Visserskaai in Ostend (using a small cannon net). * 2015: 9 HG nesting on the roof of the Vismijn in Ostend, 13 LBBG nesting in the port of Zeebrugge, and 16 LBBG nesting in Vlissingen-Oost.

Sampling description

The birds are tracked with the University of Amsterdam Bird Tracking System (UvA-BiTS, http://www.uva-bits.nl). The system has been described in detail in Bouten et al. 2013. The lightweight, solar powered GPS trackers periodically record the 3D position and air temperature, and can be configured to collect body movements with the built-in tri-axial accelerometer as well. The system allows us to remotely set or change a measurement interval per tracker: the actual interval between measurements is provided in samplingEffort as secondsSinceLastOccurrence. The data are stored on the tracker, until these can be transmitted automatically and wireless to a base station using the built-in ZigBee transceiver with whip antenna. This receiver is also used to receive new measurement settings. The spatial range for this communication is restricted to the location of the base station (or antenna network), which is placed near the colony. Data cannot be retrieved from birds that do not return to the colony with the base station. For 3 of the 101 birds fitted with trackers no data were obtained and their organismIDs (L909374, 5331094 ARNHEM, L909202) will thus not be found in the dataset. At the time of publication most individuals (88%) were tracked for more than 10 days and 41% for more than 100 days. The longest tracking period is 838 days (a HG with organismID H903185). Data received by the base stations are automatically harvested, post-processed, and stored in a central PostgreSQL database at UvA-BiTS (http://www.uva-bits.nl/virtual-lab), which is accessible to the involved researchers only. We periodically export the tracking data to CartoDB for visualization purposes (see the External datasets section), removing test records and flagging outliers. To create the Darwin Core Archive, we extract the data from the database and standardize these to Darwin Core using an SQL query (https://github.com/LifeWatchINBO/data-publication/blob/master/datasets/bird-tracking-gull-occurrences/mapping/dwc-occurrence.sql). The dataset is documented, published via our IPT (http://dataset.inbo.be/bird-tracking-gull-occurrences), and registered with the Global Biodiversity Information System (http://www.gbif.org/dataset/83e20573-f7dd-4852-9159-21566e1e691e). Issues or remarks regarding the data or this procedure can be reported at https://github.com/LifeWatchINBO/data-publication/tree/master/datasets/bird-tracking-gull-occurrences To extract data from one individual, one can use organismID, which contains the unique metal leg ring code of each bird. Tracker IDs are provided in dynamicProperties as device_info_serial. For an overview of all GPS trackers and the individual birds these are mounted on, see https://inbo.cartodb.com/u/lifewatch/tables/bird_tracking_devices/public.

Quality control

See the section Sampling description for more details: our import procedure (https://github.com/LifeWatchINBO/bird-tracking/blob/master/cartodb/import-procedure.md) and standardization to Darwin Core (https://github.com/LifeWatchINBO/data-publication/blob/master/datasets/bird-tracking-gull-occurrences/mapping/dwc-occurrence.sql) are publicly documented.

Method Steps

  1. Researcher captures bird, takes biometrics, attaches GPS tracker, and releases bird.
  2. Researcher sets a measurement scheme, which can be updated anytime.
  3. GPS tracker records data.
  4. GPS tracker automatically receives new measurement settings and transmits recorded data when a connection can be established with the base station at the colony.
  5. Recorded data are automatically harvested, post-processed, and stored in a central PostgreSQL database at UvA-BiTS.
  6. LifeWatch INBO team periodically exports tracking data to CartoDB and makes these publicly accessible.
  7. LifeWatch INBO team periodically (re)publishes data as a Darwin Core Archive, registered with GBIF.
  8. Data stream stops when bird no longer returns to colony or if GPS tracker no longer functions (typical tracker lifespan: 2-3 years).

References

Stienen EWM, Desmet P, Aelterman B, Courtens W, Feys S, Vanermen N, Verstraete H, Van de walle M, Deneudt K, Hernandez F, Houthoofdt R, Vanhoorne B, Bouten W, Buijs RJ, Kavelaars MM, Müller W, Herman D, Matheve H, Sotillo A, Lens L (2016) GPS tracking data of Lesser Black-backed Gulls and Herring Gulls breeding at the southern North Sea coast. ZooKeys 555: 115–124. doi: 10.3897/zookeys.555.6173
http://doi.org/10.3897/zookeys.555.6173

Bouten W, Baaij EW, Shamoun-Baranes J, Camphuysen KCJ (2013) A flexible GPS tracking system for studying bird behaviour at multiple scales. Journal of Ornithology 154(2): 571-580. doi: 10.1007/s10336-012-0908-1
http://doi.org/10.1007/s10336-012-0908-1

Stienen EWM, Courtens W, Van de walle M, Vanermen N, Verstraete H (2015) Monitoring van kustbroedvogels in de SBZ-V ‘Kustbroedvogels te Zeebrugge-Heist’ en de westelijke voorhaven van Zeebrugge tijdens het broedseizoen 2014. INBO.R.2015.7299133 Instituut voor Natuur- en Bosonderzoek, Brussels (in Dutch) https://www.inbo.be/nl/publicatie/monitoring-van-kustbroedvogels-de-sbz-v-kustbroedvogels-te-zeebrugge-heist

Strucker RCW, Hoekstein MSJ, Wolf PA (2013) Kustbroedvogels in het Deltagebied in 2012. RWS Centrale Informatievoorziening BM 13.18 (in Dutch)

Strucker RCW., Arts FA, Hoekstein MSJ (2015) Kustbroedvogels in het Deltagebied in 2014. RWS Centrale Informatievoorziening BM 15.07 (in Dutch)

Wetlands International (2015) “Waterbird Population Estimates”. Retrieved from http://wpe.wetlands.org on 2015-12-01