Flora Mycologica Iberica Project dat…

Occurrence dataset published by Real Jardín Botánico (CSIC)

  • 59,235

    Occurrences
View occurrences

Summary

Full Title

Flora Mycologica Iberica Project database

Description

The database contains detailed distribution information on several fungus groups species. The information has been revised, and in many time compiled, by expert mycologist(s) working on the monographs for the Flora Mycologica Iberica Project (FMI). Records comprise both collection and observational data, obtained from a variety of sources including field work, herbaria, and literature. The database contains 54,138 records, of which 20,813 are georeferenced. These correspond to 2445 species, grouped in 18 classes. The geographical scope of the dataset is Iberian Peninsula (Continental Portugal and Spain) and Balearic Islands. The complete dataset is provided in Darwin Core Archive format. The " Flora Mycologica Iberica Project database" is one of the main results produce by the "Flora Mycologica, a research project that stood from 1996 to 2008 and involved over 30 researchers . It provides information on 2,445 fungus species recorded from The Iberian Peninsula and Balearic Islands. As an online resource, it is a valuable service, with a high reuse potential, based on its coverage, taxonomic scrutiny --carried out by taxonomic experts in the different groups-- and validation processes of the associate information (location, habitat). The other major outcome of the project were the monographs of the covered groups: Aphyllophorales [p.p.](Telleria Melo, 1995), Myxomycetes [p.p.] (Lado & Pando, 1997), Gasteromycetes [p.p.] (Calonge, 1998), Laboulbeniales (Santamaria, 1998, 2003) and Dictiosporic Dothideales (Checa, 2004).These provides description, illustrations, identification keys and additional infomation on the species and taxa included in this database.

Purpose

This dataset was conceived within the Flora Mycologica Iberica Project (FMI) to serve two purposes: 1. To gather the available information on Iberian fungi as published on the scientific literature, to establish a baseline knowledge for the project and provide basic information upon which to elaborate the project's monographs, among other purposes. 2. To incorporate the primary data produced and compiled during the project to the previously available information, and thus providing updated and validated data on Iberian fungi. These data were gathered or verified by professional researches, many of whom also authored the project's monographs (see under References). Primary data added in this way mostly came from studied herbarium specimens and field campaigns. Targeted field surveys on sites poorly known and of ecological or conservation relevance were carried out within the framework of the project. The primary data were also made available as publication in the "Cuadernos de Trabajo de Flora Micologica" series (see References).

Temporal coverages

Date range: Jan 1, 1870 - Feb 20, 2012

Language of Metadata

ENGLISH

Language of Data

SPANISH

Originator
Francisco Pando
Researcher
Real Jardín Botánico -CSIC Claudio Moyano 1 28014 Madrid Madrid Spain +34914203017
Metadata author
Francisco Pando
Researcher
Real Jardín Botánico -CSIC Plaza de Murillo, 2 28014 Madrid Madrid Spain +34 91 420 30 17
Administrative contact
Francisco Pando
Researcher
Real Jardín Botánico -CSIC Claudio Moyano 1 28014 Madrid Madrid Spain +34914203017

doi:10.15468/sssx1e

Published by

Real Jardín Botánico (CSIC)

Publication Date

Aug 18, 2016

Registration Date

Apr 3, 2007

Hosted by

GBIF-Spain

Served by

GBIF Spain IPT

Links

Alternative Identifiers

External Data

Metadata Documents

21,969 Georeferenced data

View records

All records | In viewable area

Description

Iberian Peninsula, Balearic Islands, South-Western Europe

About

What does this map show?

Other Contacts

Point of contact
Francisco Pando
Researcher
Real Jardín Botánico -CSIC Claudio Moyano 1 28014 Madrid Madrid Spain +34914203017
Author
Francisco Pando
Researcher
Real Jardín Botánico -CSIC Real Jardín Botánico -CSIC; Claudio Moyano 1 28014 Madrid Madrid Spain 34914203017
Content provider
Ireneia Melo
Researcher
Jardim Botânico, Museu Nacional de História Natural, Universidade de Lisboa Rua da Escola Politécnica, 58 1250-102 Lisboa Lisboa Portugal
Content provider
Jose Cardoso
Technical staff
Jardim Botânico, Museu Nacional de História Natural, Universidade de Lisboa Rua da Escola Politécnica, 58 1250-102 Lisboa Lisboa Portugal
Author
María Teresa Tellería
Professor
Real Jardín Botanico-CSIC Claudio Moyano, 1 28014 Madrid Madrid Spain +34914203017
Author
Margarita Dueñas
Curator
Real Jardín Botánico -CSIC Claudio Moyano 1 28014 Madrid Madrid Spain +34914203017
Content provider
Isabel Salcedo
University professor
Universidad del País Vasco / Euskal Herriko Unibertsitatea Dpto. Biología Vegetal y Ecología (Botánica) Facultad de Ciencia y Tecnología. Apdo. 644 48080 Bilbao Spain
Content provider
Sergi Santamaria
University professor
Universitat Autònoma de Barcelona Departamento de Biología Animal, de Biología Vegetal y de Ecología Edificio C Facultad de Biociencias 08193 Bellaterra Spain
Content provider
M.Isabel Castro Cerceda
Proffesor
Universidade de Vigo Campus As Lagoas-Marcosende 36310 Vigo Spain
Content provider
Julia Checa
University professor
Universidad de Alcalá Departamento de Ciencias de la Vida (Botánica) 28805 Alcalá de Henares Spain
Content provider
Fernando Esteve-Raventós
University professor
Universidad de Alcalá Departamento de Ciencias de la Vida (Botánica) 28805 Alcalá de Henares Spain
Content provider
Carlos Illana
University professor
Universidad de Alcalá Departamento de Ciencias de la Vida (Botánica) 28805 Alcalá de Henares Spain
Content provider
María Natividad Blanco
University professor
Universidad de Alcalá Departamento de Ciencias de la Vida (Botánica) 28805 Alcalá de Henares Spain
Content provider
Ricardo Galán
University professor
Universidad de Alcalá Departamento de Ciencias de la Vida (Botánica) 28805 Alcalá de Henares Spain
Content provider
Gabriel Moreno
University professor
Universidad de Alcalá Departamento de Ciencias de la Vida (Botánica) 28805 Alcalá de Henares Spain
Content provider
Michel Heykoop
University professor
Universidad de Alcalá Departamento de Ciencias de la Vida (Botánica) 28805 Alcalá de Henares Spain
Content provider
Teresa Almaraz
N/A
c/ Pasamar, 2 c/ Pasamar, 2 28003 Las Rozas Spain
Content provider
Enrique Descals
Researcher
IMEDEA (CSIC-UIB) Miguel Marqués, 21 07190 Esporles Spain
Content provider
Pablo P. Daniëls
N/A
Universidad de Córdoba, Departamento de Botánica, Ecologia y Fisiología Vegetal Ed. Celestino Mutis, 3º. Campus Rabanales. 14071 Cordoba Spain
Author
Carlos Lado
Researcher
Real Jardín Botánico -CSIC Claudio Moyano 1 28014 Madrid Madrid Spain +34914203017
Content provider
Francisco Calonge
Professor emeritus
Real Jardín Botánico -CSIC Claudio Moyano 1 28014 Madrid Madrid Spain +34914203017
Content provider
Luis Alberto Parra
N/A
N/A Av. del Padre Claret, 7 09400 Aranda de Duero Spain
Content provider
Javier Rodríquez Pérez
N/A
IMEDEA (CSIC-UIB) Miguel Marqués, 21 07190 Esporles Spain
Content provider
Jaume Llistosella
University professor
Universitat de Barcelona Departament de Biologia Vegetal. Universitat de Barcelona. Av. Diagonal, 645 08028 Barcelona Barcelona
Administrative contact
Francisco Pando

Taxonomic Coverage

Dataset comprising distribution records of fungus species belonging to selected groups (Agaricomycetes, Dothideomycetes, Mycetozoa, Laboulbeniomycetes, Ustilaginomycetes and Acuatic hyphomycetes) found in the Iberian Peninsula and Balearic Islands (Western Europe). Sources included literature, herbaria and field surveys.

CLASS
Agaricomycetes, Dothideomycetes, Myxomycetes (Mycetozoa, Protozoa), Laboulbeniomycetes, Ustilaginomycetes, Acuatic hyphomycetes (informal group), Atractiellomycetes, Classiculomycetes, Dacrymycetes, Eurotiomycetes, Exobasidiomycetes, Leotiomycetes, Microbotryomycetes, Orbiliomycetes, Pezizomycetes, Protosteliomycetes, Pucciniomycetes, Sordariomycetes, Tremellomycetes
ORDER
Agaricales, Boletales, Dothideales, Cantharellales, Corticiales, Gomphales, Hymenochaetales, Laboulbeniales, Phallales, Polyporales, Russulales, Thelephorales, Ustilaginales, Echinosteliales, Physarales, Trichiales, Stemonitales

Flora Mycologica Iberica

show all

Study area description

Terrestrial biomes and freshwater environments in the Iberian Peninsula and Balearic Islands

Design description

The final objective of the FMI project was to make a critical flora which enables the identification of fungi naturally growing in the Iberian Peninsula and Balearic Islands (excluding parasites of humans and other mammals). One of the pillars in pursuing this objective was the compilation of the literature-based information about Iberian fungi. This was planned as a two-step process, first to compile a bibliography of all published works citing fungi from the Iberian Peninsula (Pando & al. 1990; Cardoso & Melo, 1992, Pando, 1996). This in itself is a very robust resource for carrying out on all kinds of studies involving fungi in the Iberian Peninsula. Second phase was to enter into a database chorological records (species occurrences) contained in those publications. We soon realized that to start from A to Z was going to be a never-ending job; so we switched strategy; quitted that approach and instead aimed to compile a dataset of all genera cited in all publications. That task was accomplished surprisingly quickly (c. 79,000 genus -publication entries for c. 10,000 works in less than two years). With that information at hand, we could then target the specific publications and occurrences needed for the monographs to be prepared within the FMI project. Data entry management and publication was carried out using the Bibmaster software (Pando & al, 2004). Manuals and guidelines were prepared to determine data entry and quality control procedures. Two were published (Pando, 1991; Pando & al. 1999).

Funding

Funded by Spanish Government under its National Science Plan through its Competitive Grant Programs. Awards: Flora Mycologica Iberica I DGCYT PB87-0370 Flora Mycologica Iberica II DGCYT PR92-0012 Flora Mycologica Iberica III DGES PB95-0129-C03 Flora Mycologica Iberica IV PB98-0538-C04 Flora Mycologica Iberica V REN2002-04068-C02-01 Data capture covered mostly by an agreement between CSIC and National Institute Of Employment (INEM). Program: Módulo de documentación Botánica INEM-CSIC. An additional Grant was awarded for FMI (CGL2006-12732-C02-01), under which records pertaining Lactarius (Russulales) were compiled, but not incorporated into this database.

Project Personnel

Administrative contact
Francisco Pando

Methodology

Study extent

The main source for the study was the literature collation and herbarium revision for data on the selected fungal groups in the Iberian Peninsula and Balearic Island. The information was complemented by targeted field campaigns on sites poorly known and of ecological or conservation relevance.

Sampling description

These two data avenues are subjected to different methodologies. Data collation from literature references. Three procedures are defined in this area: 1) To Identify and obtain relevant publications. A set of explicit criteria to determine whether a publication was or not eligible to be included into the database was defined. These were published by Pando (1991:11-13). The library of the Real Jardín Botánico-CSIC was the main source for literature. When an eligible publication was identified and not found in this library a copy was obtained by the usual procedures (library exchange, colleagues, etc) and deposited in that library. 2) Treated genus data entry. Genus names were extracted in a systematic way from the publications and entered into the database. Publications and genus names compiled until 1995 were published in three volumes of the "Cuadernos de Trabajo" series (Pando et al. 1990; Cardoso & Melo, 1992; Pando, 1996). At this point, the database contained data from c. 5,000 publications, at the end of the project this gathered data pertaining to c. 10,000 publications. 3) Occurrence data entry Although different approaches were explored at the beginning of the project, a procedure in which occurrence records were entered targeting specific taxonomic groups --on the basis of the project's priorities and the schedule for the publication of the monographs was soon consolidated. An effort was made to record all information associated to each occurrence, following an established schema, as described by Pando (1991). These works were mostly carried out by a small team of data entry technicians and supervisors, with the support of the Project's scientific team. Primary data produced and compiled as part of the research conducted within the project, by researches with the project, were also incorporated into the database. These come from studied specimens held in herbaria or fields surveys carried out within the framework of the project. These data were in many cases published as the "Bases Corológicas series in "Cuadernos de Trabajo" (See References).

Quality control

Quality control and assurance comprises a number of procedures, references and tools along the data life cycle. These can be summarized as follows: A Data-entry manual on what to capture and what not and how to capture the information was developed and published (Pando, 1991). International standards approved or endorsed by the "Biodiversity Information Standards/TDWG). Specifically the following were used: Brummitt & Powell (1992), Lawrence & al. (1968), and TL-2 (Stafleu & Cowan (1976-1987; Stafleu & Mennega, 1993-2000; Dorr & Nicolson, 2008, 2009 ). Additionally, the following works were use a reference for taxonomic names: Farr& al. (1979, 1986), and the Dictionary of the Fungi (Hawksworth & al. 1983, 1995; Kirk & al. 2001, 2008), Saccardo (1882-1972) The database management system used (Pando & al., 2004), had many of these standards build-in as dictionaries and controlled vocabularies. All newly entered records were checked against the actual publications by the supervisors as part of the database work flow. A final check was done by the "Bases Corológicas" authors and editors as part of the publication process. Dataset publication in the GBIF network include data transformation to comply with the Darwin Core specification (Wieczorek & al., 2012) and further validation procedures (geographic coordinate format, coordinates within country/provincial boundaries, absence of ASCII anomalous characters in the dataset) using DARWIN_TEST (v3.3) software (Ortega-Maqueda & Pando 2008).

Method Steps

  1. N/A

References

ALMARAZ, T. (2002). Bases corológicas de Flora Micológica Ibérica. Números 1766-1931. 17: 1-127

ALMARÁZ. T. (ED.). (1996). Bases corológicas de Flora Micológica Ibérica. 693-894. Cuad. Trab. Flora Micol. Iber. 9: 1-242

CALONGE, F.D (1998). Gasteromycetes I. Lycoperdales, Nidulariales, Phallales, Sclerodermatales, Tulostomatales. Flora Mycologica Iberica. Vol. 3. 272 pp

CARDOSO. J. & I. MELO (1992). lnformacio bibliográfica II. Portugal. Cuad. Trab. Flora Micol. Iber. 5: 1-96

CASTRO CERCEDA. M.L, J. CHECA & F. PANDO (1997). Bases corológicas de Flora Micológica Ibérica. Adiciones y números 1224-1411. Cuad. Trab. Flora Micol. Iber. 12: 1-192

CHECA, J. (2004). Dictyosporic Dothideales. Flora Mycologica Iberica. Vol. 6. 162 pp

DESCALS, E. & J. RODRÍQUEZ (2003). Bases corológicas de Flora Micológica Ibérica. Números 1933-2069. Cuad. Trab. Flora Micol. Iber. 18: 1-200

DUEÑAS. M. (ED.). (1997). Bases corológicas de Flora Micológica Ibérica. 1114-1223. Cuad. Trab. Flora Micol. Iber. 11: 1-104

ESTEVE-RAVENTÓS. F. (1999). Bases corológicas de Flora Micológica Ibérica. Números 1412-1571. Cuad. Trab. Flora Micol. Iber. 13: 1-139

LADO, C. (2001). A nomenclalural taxabase of Myxomycetes. Cuad. Trab. Flora Micol. Iber. 16: 1-224

LADO. C. (ED.) (1993). Bases corológicas de flora Micológica Ibérica. 376-692. Cuad. Trab. Flora Micol. Iber. 7: 1-305

MELO, I., L. SALCEDO,. M.T. TELLERÍA, M.N. BLANCO & C. ILLANAS (2004). Bases corológicas de Flora Micológica Ibérica. Adiciones y números 2179-2238. Cuad. Trab. Flora Micol. Iber. 20: 1-100

ORTEGA-MAQUEDA, I. & PANDO, F. (2008). DARWIN TEST (Versión): Una aplicación para la validación y el chequeo de los datos en formato Darwin Core 1.2 or Darwin Core 1.4.

PARRA, L.A. & P.P. DANIËLS (2003). Bases corológicas de Flora Micológica Ibérica. Números 2070-2178. Cuad. Trab. Flora Micol. Iber. 19: 1-171

SANTAMARÍA, S. (1998). Laboulbeniales I. Laboulbenia. Flora Mycologica Iberica. Vol. 4. 187 pp

SANTAMARIA. S. (ED.) (1996). Bases corológicas de Flora Micológica Ibérica. 895•1113. Cuad. Trab. Flora Micol. Iber. 10: 1-128

SANTAMARÍA, S. (2003). Acompsomyces-Ilyomyces. Flora Mycologica Iberica. Vol. 5. 344 pp

TELLERÍA M.T. (ED.) (1991). Tellería. M.T. (ed.). Cuad. Trab. Flora Micol. Iber. 3: 1-188

TELLERÍA M.T. (ED.) (1992). Bases corológicas de Flora Micológica Ibérica. 133-249. Cuad. Trab. Flora Micol. Iber. 4: 1-208

TELLERÍA M.T. (ED.) (1993). Bases corológicas de Flora Micológica Ibérica. 250-375. Cuad. Trab. Flora Micol. Iber. 6: 1-182

WIECZOREK J, BLOOM D, GURALNICK R, BLUM S, DÖRING M, ET AL. (2012). Darwin Core: An Evolving Community-Developed Biodiversity Data Standard. PLoS ONE 7(1): e29715

Almaráz, T. (2002). Bases corológicas de Flora Micológica Ibérica. Números 1766-1931. Cuad. Trab. Flora Micol. Iber. 17: 1-127

Brummitt, R.K. & Powell, C.E. (ed.) (1992). Authors of plant names. A list of authors of scientific names of plants, with recommended standard form of their names including abbreviations. Royal Botanic Gardens, Kew. Richmond

Dorr, L.J. & Nicolson, D.H. (2008). Taxonomic Literature (Supplement VII: F-Frer). Regnum Veg. 149

Dorr, L.J. & Nicolson, D.H. (2009). Taxonomic Literature (Supplement VIII: Fres-G). Regnum Veg. 150

Farr, E.R., Leussink, J.A. & Stafleu, F.A. (eds.) (1979). Index Nominum Genericorum (Plantarum), vol. 1. Regnum Veg. 100

Farr, E.R., Leussink, J.A. & Stafleu, F.A. (eds.) (1979). Index Nominum Genericorum (Plantarum), vol. 2. Regnum Veg. 101

Farr, E.R., Leussink, J.A. & Stafleu, F.A. (eds.) (1979). Index Nominum Genericorum (Plantarum), vol. 3. Regnum Veg. 102

Farr, E.R., Leussink, J.A. & Zijlstra, G. (eds.) (1986). Index Nominum Genericorum (Plantarum), Supplementum. Regnum Veg. 113

Hawksworth, D.L., Kirk, P.M., Sutton, B.C. & Pegler, D.N. (1995). Ainsworth & Bisby's Dictionary of the Fungi. 8th ed. IMI, CAB International. Wallingford

Hawksworth, D.L., Sutton, B.C. & Ainsworth, G.C. (1983). Ainsworth & Bisby's Dictionary of the Fungi. 7th ed. Commonweath Mycological Institute. Kew

Kirk, P.M., Cannon, P.F., David, J.C. & Stalpers, J.A. (2001). Dictionary of the Fungi. 9th ed. CAB International. Wallingford.

Kirk, P.M., Cannon, P.F., Minter, D.W. & Stalpers, J.A. (2008). Dictionary of the Fungi. 10th ed. CAB International. Wallingford

Lado,C. & Pando,F. (1997) Myxomycetes, I. Ceratiomyxales, Echinosteliales, Liceales, Trichiales. Flora Mycologica Iberica. Vol. 2.

Lawrence, G.H.M., Buchheim, A.F.G., Daniels, G.S. & Dolezal, H. (eds.) (1968). . Hunt Botanical Library. Pittsburgh

Pando, F. & al. (2004). BIBMASTER (3.7): A database application for Biodiversity Projects: taxa-level information, nomenclature, literature and specimen management (http://www.gbif.es/bibmaster/bibmaster.php; 5 jun 2012).

Pando, F., Dueñas, M., Lado, C. & Tellería, M.T. (1990). Información bibliográfica. I. España peninsular e Islas Baleares. Cuad. Trab. Flora Micol. Iber. 1: 1-154

Pando, F. (1991). Manual de las Bases de Datos de Flora Micológica Ibérica. Cuad. Trab. Flora Micol. Iber. 2: 1-67

Pando, F. (ed.) (1996). Información bibliográfica. III. Adiciones, correcciones e índices. Cuad. Trab. Flora Micol. Iber. 8: 1-326

Pando, F., Muñoz Garmendia, F. & Aedo, C. (1999). Manual de las bases de datos nomenclaturales de •Flora Mycologica Iberica• y •Flora iberica•. Cuad. Trab. Flora Micol. Ibér. 14: 1-56

Saccardo, P.A. (1882-1931). Sylloge fungorum omnium hucusque cognitorum. Sumptibus auctoris. Typis seminarii. Padua

Stafleu, F.A. & Cowan, R.S. (1976). Taxonomic Literature (2 ed.), vol. 1. Regnum Veg. 94

Stafleu, F.A. & Cowan, R.S. (1979). Taxonomic Literature (2 ed.), vol. 2. Regnum Veg. 98

Stafleu, F.A. & Cowan, R.S. (1981). Taxonomic Literature (2 ed.), vol. 3. Regnum Veg. 105

Stafleu, F.A. & Cowan, R.S. (1983). Taxonomic Literature (2 ed.), vol. 4. Regnum Veg. 110

Stafleu, F.A. & Cowan, R.S. (1985). Taxonomic Literature (2 ed.), vol. 5. Regnum Veg. 112

Stafleu, F.A. & Cowan, R.S. (1985). Taxonomic Literature (2 ed.), vol. 6. Regnum Veg. 115

Stafleu, F.A. & Cowan, R.S. (1985). Taxonomic Literature (2 ed.), vol. 7. Regnum Veg. 116

Stafleu, F.A. & Mennega, E.A. (1992). Taxonomic Literature (SupplementI: A-Ba). Regnum Veg. 125

Stafleu, F.A. & Mennega, E.A. (1993). Taxonomic Literature (Supplement II: Be-Bo). Regnum Veg. 130

Stafleu, F.A. & Mennega, E.A. (1995). Taxonomic Literature (Supplement III: Br-Ca). Regnum Veg. 132

Stafleu, F.A. & Mennega, E.A. (1997). Taxonomic Literature (Supplement IV: Ce-Cz). Regnum Veg. 134

Stafleu, F.A. & Mennega, E.A. (1998). Taxonomic Literature (Supplement V: Da-Di). Regnum Veg. 135

Stafleu, F.A. & Mennega, E.A. (2000). Taxonomic Literature (Supplement VI: Do-E). Regnum Veg. 137

Tellería, M.T. & Melo, I. (1995). Aphyllophorales resupinatae non poroides, I. Acanthobasidium - Cystostereum. Flora Mycologica Iberica. Vol. 1. Real Jardín Botánico Madrid; J. Cramer. Madrid, Berlin, Stuttgart

Llistosella, J. (2008). Bases corológicas de flora Micológica Ibérica. 2239-2324. Cuad. Trab. Flora Micol. Iber. 22: 1-140