Uses of GBIF in scientific research

Peer-reviewed research citing GBIF as a data source, with at least one author from Poland.
Extracted from the Mendeley GBIF Public Library.

List of publications

  • Cornwell, W., Westoby, M., Falster, D., FitzJohn, R., O'Meara, B., Pennell, M., McGlinn, D., Eastman, J., Moles, A., Reich, P., Tank, D., Wright, I., Aarssen, L., Beaulieu, J., Kooyman, R., Leishman, M., Miller, E., Niinemets, Ă., Oleksyn, J., Ordonez, A., Royer, D., Smith, S., Stevens, P., Warman, L., Wilf, P., Zanne, A., 2014.

    Functional distinctiveness of major plant lineages

    Journal of Ecology 102(2) 345-356.

    1. Plant traits vary widely across species and underpin differences in ecological strategy. Despite centuries of interest, the contributions of different evolutionary lineages to modern-day functional diversity remain poorly quantified. 2. Expanding data bases of plant traits plus rapidly improving phylogenies enable for the first time a data-driven global picture of plant functional diversity across the major clades of higher plants. We mapped five key traits relevant to metabolism, resource competition and reproductive strategy onto a phylogeny across 48324 vascular plant species world-wide, along with climate and biogeo- graphic data. Using a novel metric, we test whether major plant lineages are functionally distinctive. We then highlight the trait–lineage combinations that are most functionally distinctive within the present-day spread of ecological strategies. 3. For some trait–clade combinations, knowing the clade of a species conveys little information to neo- and palaeo-ecologists. In other trait–clade combinations, the clade identity can be highly reveal- ing, especially informative clade–trait combinations include Proteaceae, which is highly distinctive, representing the global slow extreme of the leaf economic spectrum. Magnoliidae and Rosidae con- tribute large leaf sizes and seed masses and have distinctively warm, wet climatic distributions. 4. Synthesis. This analysis provides a shortlist of the most distinctive trait–lineage combinations along with their geographic and climatic context: a global view of extant functional diversity across the tips of the vascular plant phylogeny.

    Keywords: Kolmogorov–Smirnov Importance index, determinants of plant community diversity and stru, functional traits, geographic and climatic distributions, leaf nitrogen, leaf size, maximum adult height, phylogenetic tree, seed mass, specific leaf area

  • Grech-Baran, M., SykƂowska-Baranek, K., Pietrosiuk, A., 2014.

    Biotechnological approaches to enhance salidroside, rosin and its derivatives production in selected Rhodiola spp. in vitro cultures

    Phytochemistry Reviews Forthcoming.

    Rhodiola (Crassulaceae) an arctic-alpine plant, is extensively used in traditional folk medicine in Asian and European countries. A number of investigations have demonstrated that Rhodiola prep- arations exhibit adaptogenic, neuroprotective, anti- tumour, cardioprotective, and anti-depressant effects. The main compounds responsible for these activities are believed to be salidroside, rosin and its derivatives which became the target of biotechnological investi- gations. This review summarizes the results of the diverse biotechnological approaches undertaken to enhance the production of salidroside, rosin and its derivatives in callus, cell suspension and organ in vitro cultures of selected Rhodiola species.

    Keywords: biotransformation, cultures, in vitro, rhodiola spp, rosin derivatives, salidroside

  • Habel, J., Mulwa, R., Gassert, F., Rödder, D., Ulrich, W., Borghesio, L., Husemann, M., Lens, L., 2014.

    Population signatures of large-scale, long-term disjunction and small-scale, short-term habitat fragmentation in an Afromontane forest bird

    Heredity 113(3) 205-14.

    The Eastern Afromontane cloud forests occur as geographically distinct mountain exclaves. The conditions of these forests range from large to small and from fairly intact to strongly degraded. For this study, we sampled individuals of the forest bird species, the Montane White-eye Zosterops poliogaster from 16 sites and four mountain archipelagos. We analysed 12 polymorphic microsatellites and three phenotypic traits, and calculated Species Distribution Models (SDMs) to project past distributions and predict potential future range shifts under a scenario of climate warming. We found well-supported genetic and morphologic clusters corresponding to the mountain ranges where populations were sampled, with 43% of all alleles being restricted to single mountains. Our data suggest that large-scale and long-term geographic isolation on mountain islands caused genetically and morphologically distinct population clusters in Z. poliogaster. However, major genetic and biometric splits were not correlated to the geographic distances among populations. This heterogeneous pattern can be explained by past climatic shifts, as highlighted by our SDM projections. Anthropogenically fragmented populations showed lower genetic diversity and a lower mean body mass, possibly in response to suboptimal habitat conditions. On the basis of these findings and the results from our SDM analysis we predict further loss of genotypic and phenotypic uniqueness in the wake of climate change, due to the contraction of the species' climatic niche and subsequent decline in population size.

    Keywords: biotransformation, cultures, in vitro, rhodiola spp, rosin derivatives, salidroside

  • Halama, M., Poliwoda, A., Jasicka-Misiak, I., Wieczorek, P., Rutkowski, R., 2014.

    Pholiotina cyanopus, a rare fungus producing psychoactive tryptamines

    Open Life Sciences 10(1).

    Pholiotina cyanopus was collected from wood chips and other woody remnants of undetermined tree species. Its basidiomata were found in June within the area of closed sawmill in the central part of Ć»ywiec city (SW Poland). Description and illustration of Ph. cyanopus based on Polish specimens are provided and its ecology, general distribution and comparison with similar taxa – Pholiotina smithii, Pholiotina sulcatipes, and others are discussed as well. The identity of the active compounds of Ph. cyanopus was additionally determined. Liquid chromatography–mass spectrometry (LC-MS) data sets were obtained to support the occurrence of psilocybin and its analogues – psilocin, baeocystin, norbaeocystin, and aeruginascin in air-dried basidiomata of the species. The content of psilocybin was found to be high (0.90±0.08% of dry weight), besides, analysed samples contained lower concentrations of psilocin (0.17±0.01%), and baeocystin (0.16±0.01%). Additionally, the chemical analysis revealed small amounts of norbaeocystin (0.053±0.004%) and aeruginascin (0.011±0.0007%) for the first time in the species.

    Keywords: Conocybe cyanopus, Polish mycobiota, aeruginascin, baeocystin, hallucinogenic mushrooms, norbeocystin, psilocin, psilocybin, section Cyanopodae, woodinhabiting fungi

  • Piazza, P., BƂaĆŒewicz-Paszkowycz, M., Ghiglione, C., Alvaro, M., Schnabel, K., Schiaparelli, S., 2014.

    Distributional records of Ross Sea (Antarctica) Tanaidacea from museum samples stored in the collections of the Italian National Antarctic Museum (MNA) and the New Zealand National Institute of Water and Atmospheric Research (NIWA).

    ZooKeys(451) 49-60.

    Here we present distributional records for Tanaidacea specimens collected during several Antarctic expeditions to the Ross Sea: the Italian PNRA expeditions ("V", 1989/1990; "XI", 1995/1996; "XIV", 1998/1999; "XIX", 2003/2004; "XXV", 2009/2010) and the New Zealand historical (New Zealand Oceanographic Institute, NZOI, 1958-1961) and recent ("TAN0402 BIOROSS" voyage, 2004 and "TAN0802 IPY-CAML Oceans Survey 20/20" voyage, 2008) expeditions. Tanaidaceans were obtained from bottom samples collected at depths ranging from 16 to 3543 m by using a variety of sampling gears. On the whole, this contribution reports distributional data for a total of 2953 individuals belonging to 33 genera and 50 species. All vouchers are permanently stored in the Italian National Antarctic Museum collection (MNA), Section of Genoa (Italy) and at the National Institute of Water and Atmospheric Research (NIWA Invertebrate Collection), Wellington (New Zealand).

    Keywords: Antarctica, Crustacea, MNA, NIWA, Peracarida, Ross Sea, Tanaidacea

  • Richter, D., MatuƂa, J., Pietryka, M., 2014.

    The Northernmost Populations of Tetraspora Gelatinosa (Chlorophyta) from Spitsbergen

    Polish Polar Research 35(3) 521-538.

    This article describes the morphological characteristics of the populations of green alga, Tetraspora gelatinosa, growing in the stressful Arctic conditions (77°00’22” N, 015°32’54.33” E). We present the first detailed morphological characteristics of this spe-cies from such a high latitude. Populations from both stagnant and flowing waters were studied. Depending on the type of habitat, their mucilaginous colonies (thalli) have differ-ent shapes, but the structure, size and the placement of the vegetative cells, akinetes and ameboid forms, as well as the pseudocilia morphology of both populations, were very simi-lar. Literature data on the distribution of T. gelatinosa indicate that it is a cosmopolitan spe-cies. Our data are compared with some characteristic features of this species growing in dif-ferent geographical and climatic zones. No significant differences were found in the morphology of the colonies compared, nor in the location and the inner structure of cells. How-ever, there were slight differences in cell size between the populations from warm and cold zones.

    Keywords: Arctic, Svalbard, Volvocales, green algae, pseudocilia

  • Sutkowska, A., PasierbiƄski, A., Warzecha, T., Mitka, J., 2014.

    Multiple cryptic refugia of forest grass Bromus benekenii in Europe as revealed by ISSR fingerprinting and species distribution modelling

    Plant Systematics and Evolution 300(6) 1437-1452.

    Despite not having been fully recognized, the cryptic northern refugia of temperate forest vegetation in Central and Western Europe are one of the most important in the Holocene history of the vegetation on the subconti- nent. We have studied a forest grass Bromus benekenii in 39 populations in Central, Western and Southern Europe with the use of PCR-ISSR fingerprinting. The indices of genetic population diversity, multivariate, and Bayesian analyses, supplemented with species distribution modelling have enabled at least three putative cryptic northern refu- gial areas to be recognized: in Western Europe—the Cen- tral and Rhenish Massifs, in Central Europe—the Bohemia–Moravia region and in the Eastern/Western Carpathians. Central Poland is the regional genetic melt- ing-pot where several migratory routes might have met. Southern Poland had a different postglacial history and was under the influence of an Eastern/Western Carpathian cryptic refugium. More forest species should be checked in a west–east gradient in Europe to corroborate the hypoth- esis on the Western European glacial refugia. Electronic

    Keywords: Bayesian analysis, Climate matching, Dispersal, Forest glacial refugia, Genetic structure, LGM climate, Postglacial history, melting pot

  • Sutkowska, A., PasierbiƄski, A., Warzecha, T., Mandal, A., Mitka, J., 2014.

    Refugial Pattern of Bromus Erectus in Central Europe Based on ISSR Fingerprinting

    Acta Biologica Cracoviensia Series Botanica 107-119.

    We studied the thermophilous grass Bromus erectus in Central Europe to determine its pattern of population genetic structure and genetic diversity, using ISSR-PCR fingerprinting to analyze 200 individuals from 37 popu- lations. We found three genetic groups with a clear geographic structure, based on a Bayesian approach. The first group occurred west and south of the Alps, the second east and north of the Alps, and the third was formed by four genetically depauperated populations in Germany. The populations from Germany formed a subset of the Bohemian-Moravian populations, with one private allele. Two differentiation centers, one in the Atlantic- Mediterranean and the second in the Pannonian-Balkan area, were recognized by species distribution modeling. The geographic distribution of the genetic groups coincides with the syntaxonomic split of the Festuco-Brometea class into the Festucetalia valesiaceae and Brometalia erecti orders. We found a statistically significant decrease in mean ISSR bands per individual from south to north, and to a lesser extent from the east to west. The for- mer was explained by Holocene long-distance migrations from southern refugia, the latter by the difference in the gradient of anthropopression. We hypothesize a cryptic northern shelter of the species in Central Europe in the putative Moravian-Bohemian refugium. Key

    Keywords: Festuco-Brometea, Poaceae, general linear model, glacial refugia, phylogeography, species distribution modelling

  • Vilaça, S., Biosa, D., Zachos, F., Iacolina, L., Kirschning, J., Alves, P., Paule, L., Gortazar, C., Mamuris, Z., Jędrzejewska, B., Borowik, T., Sidorovich, V., Kusak, J., Costa, S., Schley, L., Hartl, G., Apollonio, M., Bertorelle, G., Scandura, M., 2014.

    Mitochondrial phylogeography of the European wild boar: the effect of climate on genetic diversity and spatial lineage sorting across Europe

    Journal of Biogeography 41(5) 987-998.

    Aim: Climate changes in the past had a deep impact on the evolutionary history of many species and left genetic signatures that are often still detectable today. We investigated the geographical pattern of mitochondrial DNA divesity in the European wild boar (Sus scrofa). Our final aims were to clarify the influence of present and past climatic conditions, infer the geographical posi- tion of glacial refugia, and suggest post-glacial spatial dynamics. Location: Europe. Methods: D-loop sequences were obtained for 763 individuals from Portugal to western Russia. Phylogenetic, multivariate and interpolation methods were used to describe the genetic and geographical patterns. Climatic suitability during the Last Glacial Maximum (LGM) was predicted using MaxEnt. The effect of present and past suitability on the observed patterns of diversity was evaluated by multiple linear regression. Results: We confirmed the existence of a ubiquitous mitochondrial clade in Europe (E1), an endemic clade in Italy (E2) and a few East Asian haplotypes (A), presumably introgressed from domestic pigs. No Near Eastern haplotypes were detected. Genetic divergence was not simply related to geographical distance. A clear south–north decreasing gradient of diversity was observed, with maximum levels in putative glacial refugia. Latitudinal variation in climatic conditions during the LGM was shown to be a good predictor of current genetic diversity. Moreover, an unexpected similarity between Iberia and east- ern Europe was observed, while central European populations showed a higher affinity to the Italian gene pool. Main conclusions: The current distribution of mitochondrial genetic diversity was highly influenced by past climatic events, especially those related to the LGM, and is consistent with a major contribution of the Italian peninsula and the Balkans to the post-glacial recolonization of northern areas. More recent processes, such as restocking and extensive hunting, probably acted at rather local scales, without great impact on the global pattern of mitochondrial diversity.

    Keywords: Climate change, Last Glacial Maximum, Sus scrofa, genetic differentiation, glacial refugia, mtDNA, phylogeography

  • Wasowicz, P., PasierbiƄski, A., Przedpelska-Wasowicz, E., Kristinsson, H., 2014.

    Distribution patterns in the native vascular flora of iceland

    PloS one 9(7) e102916.

    The aim of our study was to reveal biogeographical patterns in the native vascular flora of Iceland and to define ecological factors responsible for these patterns. We analysed dataset of more than 500,000 records containing information on the occurrence of vascular plants. Analysis of ecological factors included climatic (derived from WORLDCLIM data), topographic (calculated from digital elevation model) and geological (bedrock characteristics) variables. Spherical k-means clustering and principal component analysis were used to detect biogeographical patterns and to study the factors responsible for them. We defined 10 biotic elements exhibiting different biogeographical patterns. We showed that climatic (temperature-related) and topographic variables were the most important factors contributing to the spatial patterns within the Icelandic vascular flora and that these patterns are almost completely independent of edaphic factors (bedrock type). Our study is the first one to analyse the biogeographical differentiation of the native vascular flora of Iceland.

    Keywords: Climate change, Last Glacial Maximum, Sus scrofa, genetic differentiation, glacial refugia, mtDNA, phylogeography