Uses of GBIF in scientific research

Peer-reviewed research citing GBIF as a data source, with at least one author from Poland.
Extracted from the Mendeley GBIF Public Library.

List of publications

  • Sutkowska, A., Pasierbiński, A., Warzecha, T., Mandal, A., Mitka, J.

    Refugial Pattern of Bromus Erectus in Central Europe Based on ISSR Fingerprinting

    Acta Biologica Cracoviensia Series Botanica 55(2) 107-119.

    We studied the thermophilous grass Bromus erectus in Central Europe to determine its pattern of population genetic structure and genetic diversity, using ISSR-PCR fingerprinting to analyze 200 individuals from 37 populations. We found three genetic groups with a clear geographic structure, based on a Bayesian approach. The first group occurred west and south of the Alps, the second east and north of the Alps, and the third was formed by four genetically depauperated populations in Germany. The populations from Germany formed a subset of the Bohemian-Moravian populations, with one private allele. Two differentiation centers, one in the Atlantic- Mediterranean and the second in the Pannonian-Balkan area, were recognized by species distribution modeling. The geographic distribution of the genetic groups coincides with the syntaxonomic split of the Festuco-Brometea class into the Festucetalia valesiaceae and Brometalia erecti orders. We found a statistically significant decrease in mean ISSR bands per individual from south to north, and to a lesser extent from the east to west. The former was explained by Holocene long-distance migrations from southern refugia, the latter by the difference in the gradient of anthropopression. We hypothesize a cryptic northern shelter of the species in Central Europe in the putative Moravian-Bohemian refugium.

    Keywords: Festuco-Brometea, general linear model, glacial refugia, Poaceae, phylogeography, species distribution, modelling

  • Sutkowska, A., Pasierbiński, A., Warzecha, T., Mitka, J.

    Multiple cryptic refugia of forest grass Bromus benekenii in Europe as revealed by ISSR fingerprinting and species distribution modelling

    Plant Systematics and Evolution 300(6) 1437-1452.

    Despite not having been fully recognized, the cryptic northern refugia of temperate forest vegetation in Central and Western Europe are one of the most important in the Holocene history of the vegetation on the subcontinent. We have studied a forest grass Bromus benekenii in 39 populations in Central, Western and Southern Europe with the use of PCR-ISSR fingerprinting. The indices of genetic population diversity, multivariate, and Bayesian analyses, supplemented with species distribution modelling have enabled at least three putative cryptic northern refugial areas to be recognized: in Western Europe—the Central and Rhenish Massifs, in Central Europe—the Bohemia–Moravia region and in the Eastern/Western Carpathians. Central Poland is the regional genetic melting-pot where several migratory routes might have met. Southern Poland had a different postglacial history and was under the influence of an Eastern/Western Carpathian cryptic refugium. More forest species should be checked in a west–east gradient in Europe to corroborate the hypothesis on the Western European glacial refugia.

    Keywords: Bayesian analysis, Climate matching, Dispersal, Forest glacial refugia, Genetic structure, Postglacial history, LGM climate

  • Vilaça1, S., Biosa, D., Warzecha, T., Mitka, J.

    Mitochondrial phylogeography of the European wild boar: the effect of climate on genetic diversity and spatial lineage sorting across Europe

    Journal of Biogeography 41(5) 987-998.

    Aim: Climate changes in the past had a deep impact on the evolutionary history of many species and left genetic signatures that are often still detectable today. We investigated the geographical pattern of mitochondrial DNA divesity in the European wild boar (Sus scrofa). Our final aims were to clarify the influence of present and past climatic conditions, infer the geographical posi- tion of glacial refugia, and suggest post-glacial spatial dynamics. Location: Europe. Methods: D-loop sequences were obtained for 763 individuals from Portugal to western Russia. Phylogenetic, multivariate and interpolation methods were used to describe the genetic and geographical patterns. Climatic suitability during the Last Glacial Maximum (LGM) was predicted using MaxEnt. The effect of present and past suitability on the observed patterns of diversity was evaluated by multiple linear regression. Results: We confirmed the existence of a ubiquitous mitochondrial clade in Europe (E1), an endemic clade in Italy (E2) and a few East Asian haplotypes (A), presumably introgressed from domestic pigs. No Near Eastern haplotypes were detected. Genetic divergence was not simply related to geographical distance. A clear south–north decreasing gradient of diversity was observed, with maximum levels in putative glacial refugia. Latitudinal variation in climatic conditions during the LGM was shown to be a good predictor of current genetic diversity. Moreover, an unexpected similarity between Iberia and east- ern Europe was observed, while central European populations showed a higher affinity to the Italian gene pool. Main conclusions: The current distribution of mitochondrial genetic diversity was highly influenced by past climatic events, especially those related to the LGM, and is consistent with a major contribution of the Italian peninsula and the Balkans to the post-glacial recolonization of northern areas. More recent processes, such as restocking and extensive hunting, probably acted at rather local scales, without great impact on the global pattern of mitochondrial diversity.

    Keywords: Climate change, Last Glacial Maximum, Sus scrofa, genetic differentiation, glacial refugia, mtDNA, phylogeography

  • Gassert, F., Schulte, U., Husemann, M., Ulrich, W., Rödder, D., Hochkirch, A., Engel, E., Meyer, J., Habel, J.

    From southern refugia to the northern range margin: genetic population structure of the common wall lizard, Podarcis muralis

    Journal of Biogeography.

    Aim Thermophilic species persisted in southern refugia during the cold phases of the Pleistocene, and expanded northwards during warming. These processes caused genetic imprints, such as a differentiation of genetic lineages and a loss of genetic diversity in the wake of (re)colonization. We used molecular markers and species distribution models (SDMs) to study the impact of range dynamics on the common wall lizard, Podarcis muralis, from southern refugia to the northern range margin. Location Parts of the Western Palaearctic. Methods We genotyped 10 polymorphic microsatellites in 282 individuals of P. muralis and sequenced the mitochondrial DNA (mtDNA) cytochrome b gene to study the genetic structure, divergence times and ancestral distribu- tions. Furthermore, we generated SDMs for climate scenarios for 6 and 21 ka derived from two different global circulation models. Results We detected two major mtDNA lineages – a western France clade (Pyrenees to Brittany), and an eastern France clade (southern France to Germany, Belgium and Luxembourg). This split was dated to c. 1.23 Ma. The latter clade was divided into two subclades, which diverged c. 0.38 Ma. Genetic diversity of microsatellites within each clade was nested and showed a significant loss of genetic diversity from south to north, a strong pattern of allele surfing across nearly all loci, and an increase in genetic differentiation towards the northern range margin. Results from SDMs suggest that southward range retraction during the late glacial period split the distribution into geographically distinct refugia. Main conclusions The strong genetic differentiation mirrors the effects of long-term isolation of P. muralis in multiple refugia. Post-glacial recolonization of Northern Europe has taken place from two distinct refugia, most probably along river systems (Rh^ one, Rhine, Moselle) and along the Atlantic coastline, with subsequent nested elimination of genetic diversity and increasing genetic differentiation at the northern range margin.

    Keywords: Climatic oscillations, Europe, genetic structure, leading edge, lizard phylogeography, microsatellites, post-glacial pathways, rear edge, refugia, species distribution models

  • Kolanowska, M.

    The naturalization status of African Spotted Orchid (Oeceoclades maculata) in Neotropics

    Plant Biosystems(July) 1-26.

    Naturalization status of the African orchid species introduced in the Neotropics, Oeceoclades maculata, was studied. Ecological niche modeling was applied to estimate the present distribution of the suitable habitats for the African Spotted Orchid. The similarity of the niches occupied by natural and invasive populations of the studied species was calculated. Moreover, future distribution of its suitable habitats was estimated on the basis of three different climatic change scenarios and the potential further expansion scale was calculated based on range overlap test. While currently O. maculata seems to have reached its potential limits of invasion in South America and as for now it should not spread to the new habitats, the species still has a potential of invasiveness in North America. The future climate changes will probably result in shifts in the distribution of African Spotted Orchid suitable niches thereby causing its expansion to the new areas.

    Keywords: Ecological niche modeling, invasion, naturalization, Neotropics, orchids

  • Vences, M., Susanne Hauswaldt, J., Steinfartz, S., Rupp, O., Goesmann, A., Künzel, S., Orozco-Terwengel, P., Vieites, D., Nieto-Roman, S., Haas, S., Laugsch, C., Gehara, M., Bruchmann, S., Pabijan, M., Ludewig, A., Rudert, D., Angelini, C., Borkin, L., Crochet, P., Crottini, A., Dubois, A., Francesco Ficetola, G., Galán, P., Geniez, P., Hachtel, M., Jovanovic, O., Litvinchuk, S., Lymberakis, P., Ohler, A., Smirnov, N.

    Radically different phylogeographies and patterns of genetic variation in two European brown frogs, genus Rana.

    Molecular phylogenetics and evolution(May).

    We reconstruct range-wide phylogeographies of two widespread and largely co-occurring Western Palearctic frogs, Rana temporaria and R. dalmatina. Based on tissue or saliva samples of over 1000 individuals, we compare a variety of genetic marker systems, including mitochondrial DNA, single-copy protein-coding nuclear genes, microsatellite loci, and single nucleotide polymorphisms (SNPs) of transcriptomes of both species. The two focal species differ radically in their phylogeographic structure, with R. temporaria being strongly variable among and within populations, and R. dalmatina homogeneous across Europe with a single strongly differentiated population in southern Italy. These differences were observed across the various markers studied, including microsatellites and SNP density, but especially in protein-coding nuclear genes where R. dalmatina had extremely low heterozygosity values across its range, including potential refugial areas, whereas R. temporaria had comparably high range-wide values, including many areas of probable postglacial colonization. A phylogeny of R. temporaria based on various concatenated mtDNA genes revealed that two haplotype clades endemic to Iberia form a paraphyletic group at the base of the cladogram, and all other haplotypes form a monophyletic group, in agreement with an Iberian origin of the species. Demographic analysis suggests that R. temporaria and R. dalmatina have genealogies of roughly the same time to coalescence (TMRCA ∼3.5 mya for both species), but R. temporaria might have been been characterized by larger ancestral and current effective population sizes than R. dalmatina. The unusually high genetic variation in R. temporaria can therefore be explained by its early range expansion out of Iberia, with subsequent cycles of differentiation in cryptic glacial refugial areas followed by admixture, while the range expansion of R. dalmatina into central Europe is a more recent event.

    Keywords: Ecological niche modeling, invasion, naturalization, Neotropics, orchids

  • Popiela, A., Lysko, A., Wieczorek, A., Molnar, A.

    The distibution of Elatine hydropiper L. (Elatinaceae)

    Acta Societatis Botanicorum Poloniae 81(2) 137-143.

    A distribution map of Elatine hydropiper L. (Elatinaceae), which belongs to the Euro-Siberian phytogeographic element, has been prepared based on literature and web-based data. Te distribution range of the taxon, comparison to previous maps and reliability of the results are discussed.

    Keywords: asia, chorology, elatinella, europe, isoëto-nanojuncetea, map, vascular plants

  • Popiela, A., Lysko, A., Wieczorek, A., Nalepka, D.

    The distribution of Elatine hexandra (Lapierre) DC. (Elatinacea)

    Acta Societatis Botanicorum Poloniae 80(1) 27-32.

    General distribution map of Elatine hexandra (Lapierre) DC. was made based on literature and web-based data confronted and possible reasons of the formation of taxon's distribution range and history are discussed.

    Keywords: chorology, Elatinella, Europe, Isoëto-Nanojuncetea, map, vascular plants

  • Witosławski, P.

    The New Locality of Chenopodium Pumilio R. Br. in Poland

    Folia Biologica et Oecologica 5(1) 43-50.

    The clammy goosefoot Chenopodium pumilio R. Br. is a rare anthropophyte in the Polish flora. Hitherto, this species was recorded in Gdańsk and Rybnik. The present study describes the newly-discovered locality in Stryków near Łódź (Central Poland), the occurrence of this species in Poland and the general geographical distribution in the world.

    Keywords: chorology, Elatinella, Europe, Isoëto-Nanojuncetea, map, vascular plants