Uses of GBIF in scientific research

Peer-reviewed research citing GBIF as a data source, with at least one author from Iceland.
Extracted from the Mendeley GBIF Public Library.

List of publications

  • Volis S, Tu T, Deng T, Zaretsky M, Fogel K S (2015)

    Phylogeographic study of Mandragora L. reveals a case of ancient human assisted migration

    Israel Journal of Plant Sciences 62(3).

    In reconstructing taxon evolution, historical biogeography is concerned with two kinds of speciation events, both resulting in a fragmented taxon distribution – vicariance and dispersal. We used PCR-RFLP of plastid DNA and a ribosomal internal transcribed spacer, sequencing of the rps16-trnK chloroplast region, flow cytometry (florescence-activated cell sorter; FACS), and ecological niche modeling to understand the role of these two processes in a disjunct distribution of genus Mandragora. The observed phylogeographic structure only partly coincided with currently recognized species. Commonly used recognition of a single species in the whole Mediterranean is not supported, given that a single haplotype observed from Morocco and Spain to Turkey is strikingly different from the haplotypes found in Israel. In the Sino-Himalayan area, the previously recognized M. chinghaiensis is nested within the M. caulescens clade indicating a very recent diversification within this lineage. And, most importantly, the obtained minimum spanning tree, observed haplotype distribution, and results of FACS call into question the existence of M. turkomanica as a species, and even as a lower taxonomic unit. Rather, the mandrake from Central Asia is nested within those from Israel, suggesting their closely related evolutionary history and ancient human assisted migration from Israel to Persia in historic times. Our study suggests that human assisted migration can explain the cases of disjunct species distribution for which vicariance was previously considered as the only plausible explanation.

    Keywords: disjunct distribution, long distance dispe

  • Wasof S, Lenoir J, Aarrestad P, Alsos I, Armbruster W, Austrheim G et al. (2015)

    Disjunct populations of European vascular plant species keep the same climatic niches

    Global Ecology and Biogeography.

    Aim Previous research on how climatic niches vary across species ranges has focused on a limited number of species, mostly invasive, and has not, to date, been very conclusive. Here we assess the degree of niche conservatism between distant populations of native alpine plant species that have been separated for thousands of years. Location European Alps and Fennoscandia. Methods Of the studied pool of 888 terrestrial vascular plant species occurring in both the Alps and Fennoscandia, we used two complementary approaches to test and quantify climatic-niche shifts for 31 species having strictly disjunct populations and 358 species having either a contiguous or a patchy distribution with distant populations. First, we used species distribution modelling to test for a region effect on each species' climatic niche. Second, we quantified niche overlap and shifts in niche width (i.e. ecological amplitude) and position (i.e. ecological optimum) within a bi-dimensional climatic space. Results Only one species (3%) of the 31 species with strictly disjunct populations and 58 species (16%) of the 358 species with distant populations showed a region effect on their climatic niche. Niche overlap was higher for species with strictly disjunct populations than for species with distant populations and highest for arctic–alpine species. Climatic niches were, on average, wider and located towards warmer and wetter conditions in the Alps. Main conclusion Climatic niches seem to be generally conserved between populations that are separated between the Alps and Fennoscandia and have probably been so for 10,000–15,000 years. Therefore, the basic assumption of species distribution models that a species' climatic niche is constant in space and time – at least on time scales 104 years or less – seems to be largely valid for arctic–alpine plants.

    Keywords: Alpine plants, arctic plants, climatic niche, disjunct distribution, distant populations, niche conservatism, niche optimum, niche overlap, niche width, species distribution modelling

  • Wasowicz P, Pauwels M, Pasierbinski A, Przedpelska-Wasowicz E, Babst-Kostecka A, Saumitou-Laprade P et al. (2015)

    Phylogeography of Arabidopsis halleri (Brassicaceae) in mountain regions of Central Europe inferred from cpDNA variation and ecological niche modelling

    PeerJ PrePrints 3.

    The present study aimed to investigate phylogeographical patterns present within A. halleri in Central Europe, to propose hypotheses explaining the emergence of these patterns and to formulate hypotheses on the formation of the present day range of A. halleri in the region. 1281 accessions sampled from 52 populations within the investigated area were used in the study of genetic variation based on chloroplast DNA. Over 500 high quality species occurrence records were used in ecological niche modelling experiments. We evidenced the presence of a clear phylogeographic structure within A. halleri in Central Europe. Our results suggest that the species might have not survived the last glacial maximum in the Carpathians and Sudetes and that its range during the last glacial maximum might have consisted of at least two major parts: (1) a northern refugium consisting of vast refugial areas north and northeast of the Alps and (2) a southern refugium located in the Dinaric Alps and Balkan Mts. We postulate that the Sudetes and Western Carpathians were colonised mainly by plants originating from the northern refugium, whereas populations from the Eastern Carpathians originate from southern refugium. We also discuss our results in relation to the problematic taxonomy of the species

    Keywords: Alps, Arabidopsis halleri, Carpathians, Harz, Quaternary, Sudetes, phylogeography, taxonomy

  • Elmendorf S, Henry G, Hollister R, Fosaa A, Gould W, Hermanutz L et al. (2014)

    Experiment, monitoring, and gradient methods used to infer climate change effects on plant communities yield consistent patterns

    Proceedings of the National Academy of Sciences 112(2) 201410088.

    SignificanceMethodological constraints can limit our ability to quantify potential impacts of climate warming. We assessed the consistency of three approaches in estimating warming effects on plant community composition: manipulative warming experiments, repeat sampling under ambient temperature change (monitoring), and space-for-time substitution. The three approaches showed agreement in the direction of change (an increase in the relative abundance of species with a warmer thermal niche), but differed in the magnitude of change estimated. Experimental and monitoring approaches were similar in magnitude, whereas space-for-time comparisons indicated a much stronger response. These results suggest that all three approaches are valid, but experimental warming and long-term monitoring are best suited for forecasting impacts over the coming decades. Inference about future climate change impacts typically relies on one of three approaches: manipulative experiments, historical comparisons (broadly defined to include monitoring the response to ambient climate fluctuations using repeat sampling of plots, dendroecology, and paleoecology techniques), and space-for-time substitutions derived from sampling along environmental gradients. Potential limitations of all three approaches are recognized. Here we address the congruence among these three main approaches by comparing the degree to which tundra plant community composition changes (i) in response to in situ experimental warming, (ii) with interannual variability in summer temperature within sites, and (iii) over spatial gradients in summer temperature. We analyzed changes in plant community composition from repeat sampling (85 plant communities in 28 regions) and experimental warming studies (28 experiments in 14 regions) throughout arctic and alpine North America and Europe. Increases in the relative abundance of species with a warmer thermal niche were observed in response to warmer summer temperatures using all three methods; however, effect sizes were greater over broad-scale spatial gradients relative to either temporal variability in summer temperature within a site or summer temperature increases induced by experimental warming. The effect sizes for change over time within a site and with experimental warming were nearly identical. These results support the view that inferences based on space-for-time substitution overestimate the magnitude of responses to contemporary climate warming, because spatial gradients reflect long-term processes. In contrast, in situ experimental warming and monitoring approaches yield consistent estimates of the magnitude of response of plant communities to climate warming.

    Keywords: climate change, space-for-time substitution, thermophilization, tundra, warming experiment

  • Kristinsson H, Heiðmarsson S, Hansen E (2014)

    Lichens From Iceland In The Collection Of Svanhildur Svane

    Botanica Lithuanica 20(1) 14-18.

    Survey was made of the lichens collected by Svanhildur Svane in different parts of Iceland from 1949 to 1997 and deposited at the Botanical Museum of the University of Copenhagen (C). As a result, 11 species, Agonimia tristicula, Aspicilia mashiginensis, Fuscidea tenebrica, Gyalecta flotowii, Lecania baeomma, Lithographa tes- serata, Pyrenopsis grumulifera, Rimularia fuscosora, Steinia geophana, Thelignya lignyota and Umbilicaria nylanderiana, were recorded as new to Iceland, and 6 species were new to certain regions in Iceland as defined in the Nordic Lichen Flora.

    Keywords: greenland, iceland, lichens, svanhildur svane

  • Wasowicz P, Pasierbiński A, Przedpelska-Wasowicz E, Kristinsson H (2014)

    Distribution patterns in the native vascular flora of iceland

    PloS one 9(7) e102916.

    The aim of our study was to reveal biogeographical patterns in the native vascular flora of Iceland and to define ecological factors responsible for these patterns. We analysed dataset of more than 500,000 records containing information on the occurrence of vascular plants. Analysis of ecological factors included climatic (derived from WORLDCLIM data), topographic (calculated from digital elevation model) and geological (bedrock characteristics) variables. Spherical k-means clustering and principal component analysis were used to detect biogeographical patterns and to study the factors responsible for them. We defined 10 biotic elements exhibiting different biogeographical patterns. We showed that climatic (temperature-related) and topographic variables were the most important factors contributing to the spatial patterns within the Icelandic vascular flora and that these patterns are almost completely independent of edaphic factors (bedrock type). Our study is the first one to analyse the biogeographical differentiation of the native vascular flora of Iceland.

    Keywords: greenland, iceland, lichens, svanhildur svane

  • Kullander S, Norén M, Friðriksson G, Santos de Lucena C (2010)

    Phylogenetic relationships of species of Crenicichla (Teleostei: Cichlidae) from southern South America based on the mitochondrial cytochrome b gene

    Journal of Zoological Systematics and Evolutionary Research 48(3) 248-258.

    Abstract Phylogenetic analysis using Bayesian inference, likelihood and parsimony methods was conducted on 60 complete mitochondrial cytochrome b sequences from 21 species of Crenicichla, including all species known from Uruguay (Crenicichla celidochilus, Crenicichla lepidota Crenicichla minuano, Crenicichla missioneira, Crenicichla punctata, Crenicichla scottii, Crenicichla vittata), Crenicichla compressiceps, Crenicichla empheres, Crenicichla geayi, Crenicichla iguassuensis, Crenicichla macrophthalma, Crenicichla menezesi, Crenicichla notophthalmus, Crenicichla regani, Crenicichla cf. regani, Crenicichla semifasciata, Crenicichla sveni, Crenicichla tendybaguassu, two unidentified species, and also two species of Teleocichla. Bayesian analysis resulted in a trichotomy with three major groups: (1) The C. missioneira species group (C. celidochilus, C. empheres, C. minuano, C. missioneira, C. tendybaguassu, and an undescribed species analyzed); (2) a group of southern species (C. iguassuensis, C. punctata, C. scottii, C. vittata); and (3) a rather heterogeneous group comprising the type species C. macrophthalma, members of the Crenicichla reticulata species group (C. geayi, C. semifasciata), members of the Crenicichla wallacii species group (C. compressiceps, C. notophthalmus, C. regani, C. cf. regani), members of the Crenicichla saxatilis species group (C. lepidota, C. menezesi, C. sveni, C. sp.), and two species of Teleocichla. Parsimony jackknifing resulted in a quadritomy with: (1) C. macrophthalma, (2) Teleocichla, (3) the saxatilis + wallacii group species, and (4) the rest, which include C. geayi and C. semifasciata as sister group to a dichotomy with the C. missioneira group and the remaining southern species. The sequence variation within the C. missioneira group is remarkably minor despite considerable morphological differences, supporting the conclusion that it forms an endemic species flock in the Uruguay River basin. Previously proposed species groups within the speciose genus Crenicichla (more than 90 species known) are partly corroborated. However, C. celidochilus was not previously associated with the C. missioneira species group, and C. vittata has not previously been associated with C. scottii, C. iguassuensis, or C. punctata. Crenicichla lepidota, C. sveni, C. menezesi and C. sp. represent the C. saxatilis group. Species of small size, representing the C. wallacii species group and Teleocichla are characterized by very long branches, and the position of Teleocichla differed considerably between the Bayesian and parsimony trees. This finding does not invalidate Teleocichla but rather suggests that the several monophyletic major clades within Crenicichla may need nominal recognition. A putative hybrid specimen with a morphology combining components from C. vittata and C. scottii, but with a cytochrome b sequence from C. scottii was found in a sample from the Rio Quaraí/Cuareim. Another putative hybrid specimen with a unique morphology but a cytochrome b sequence agreeing with C. scottii was found in a sample from Maldonado, but no other Crenicichla species than C. scottii is known from that locality. Zusammenfassung Eine phylogenetische Analyse mit Hilfe von Bayesianischer Inferenz, Likelihood und Parsimonie-Methoden wurde an Hand von 60 kompletten mitochondrialen Cytochrome b-Sequenzen von 21 Arten von Crenicichla durchgeführt, die alle Arten aus Uruguay (C. celidochilus, C. lepidota C. minuano, C. missioneira, C. punctata, C. scottii, C. vittata,), außerdem C. compressiceps, C. empheres, C. geayi, C. iguassuensis, C. macrophthalma, C. menezesi, C. notophthalmus, C. regani, C. cf. regani, C. semifasciata, C. sveni, C. tendybaguassu, sowie zwei nicht identifizierte Arten und zwei Arten der Gattung Teleocichla umfassen. Die Bayesianische Analyse ergab eine Trichotomie mit drei Gruppen: (1) Die C. missioneira- Artengruppe (C. celidochilus, C. empheres, C. minuano, C. missioneira, C. tendybaguassu, und eine noch unbeschriebene Art; (2) eine Gruppe von im Süden verbreiteten Arten (C. iguassuensis, C. punctata, C. scottii, C. vittata), und (3) eine recht heterogene Gruppe, die die Typusart C. macrophthalma, Mitglieder der C. reticulata Artengruppe (C. geayi, C. semifasciata), Mitglieder der C. wallacii- Artengruppe (C. compressiceps, C. notophthalmus, C. regani, C. cf. regani), Mitglieder der C. saxatilis-Artengruppe (C. lepidota, C. menezesi, C. sveni, C. sp.), sowie die zwei Teleocichla-Arten beinhaltete. Die Parsimonie-Analyse mit Anwendung von Jackknifing erbrachte eine Quadritomie mit (1) C. macrophthalma, (2) Teleocichla, (3) den Arten der saxatilis + wallacii-Artengruppen, und (4) dem Rest, der C. geayi and C. semifasciata enthielt, die als Schwestergruppe zur C. missioneira-Artengruppe plus den übrigen im Süden verbreiteten Arten errechnet wurde. Die Variation in der DNA-Sequenz innerhalb der C. missioneira-Artengruppe ist erstaunlich niedrig trotz doch recht beträchtlicher morphologischer Unterschiede, was die Hypothese unterstützt, dass es sich um einen endemischen Artenschwarm des Uruguay-Flusses handelt. Crenicichla celidochilus war bisher nicht mit der C. missioneira-Artengruppe in Verbindung gebracht worden. Ebenso war man bisher nicht von einer näheren Verwandtschaft von Crenicichla vittata zu den Arten C. scottii, C. iguassuensis oder C. punctata ausgegangen. Bisher vorgeschlagene Artengruppen innerhalb der artenreichen Gattung Crenicichla (mit mehr als 90 Arten) wurden teilweise bestätigt. Crenicichla lepidota, C. sveni, C. menezesi und C. sp. gehören zur C. saxatilis-Artengruppe. Die kleinwüchsigen Arten, die die C. wallacii-Artengruppe repräsentieren, sowie auch Teleocichla waren durch lange Äste gekennzeichnet, wobei sich die Stellung von Teleocichla in den beiden Stammbäumen, die durch Bayesianische oder Parsimonie-Analysen erzielt wurden, stark unterschied. Dies heißt nicht, dass Teleocichla keine gültige Gattung darstellt, sondern dass mehrere monophyletische Gruppen innerhalb von Crenicichla einen wissenschaftlichen Namen bekommen sollten. Cytochrom b besitzt offenbar nicht das nötige Auflösungspotential, um die Verwandtschaftsverhältnisse zwischen den größeren Gruppen zu klären. Ein mögliches Hybridexemplar mit einer Mischung von morphologischen Merkmalen von C. vittata wie auch C. scottii, jedoch mit der Cytochrom b-Sequenz von C. scottii befand sich unter den Exemplaren, die im Rio Quaraí/Cuareim gesammelt worden waren. Ein weiteres mögliches Hybridtier mit einzigartigen morphologischen Merkmalen, aber einer Cytochrom b-Sequenz, die mit der von C. scottiiübereinstimmte, befand sich unter den Exemplaren von Maldonado, obwohl von dort bis auf C. scottii keine weitere Crenicichla-Art bekannt ist.

    Keywords: Uruguay, hybrids, phylogeny, species flock