Uses of GBIF in scientific research

Peer-reviewed research citing GBIF as a data source, with at least one author from Croatia.
Extracted from the Mendeley GBIF Public Library.

List of publications

  • Ferretti, F., Morey Verd, G., Seret, B., Sulić Šprem, J., Micheli, F., 2015.

    Falling through the cracks: the fading history of a large iconic predator

    Fish and Fisheries n/a-n/a.

    Human impact on the oceans predates scientific observation, which for many animal populations has captured only recent changes. Such a limited knowledge can hamper finding optimal management and conservation strategies including setting appropriate recovery targets. Sawfishes are among the most endangered marine vertebrates in the ocean. Historical human impacts have resulted in sawfish extinction in many coastal areas around the world; however, in the Mediterranean Sea, their past presence and possible extinction have been debated for decades. Recently, it was concluded that the region never hosted resident populations because of unsuitable environmental conditions. Through an extensive bibliographic and archival search and an extinction analysis, we reconstructed the history of sawfishes in the Mediterranean Sea. Between 1576 and 1959, there were 48 independent accounts of the occurrence of two sawfish species (Pristis pristis, Pristidae and Pristis pectinata, Pristidae), including 24 documented catches. Sawfishes were mainly recorded in the western Mediterranean, in areas close to large rivers with light human impact. Most of the documented individuals were juveniles, suggesting local parturition. Extinction analyses yielded variable results and were affected by the sparseness of records but suggested that both species went extinct in the Mediterranean Sea in the 1960s–1970s. Our results challenge current assumptions on sawfish ecology and biogeography, offer new options for sawfish conservation in the Atlantic and highlight the importance of historical analyses for reconstructing ecosystem baselines and setting recovery targets.

    Keywords: bibliographic analysis, ecological baselines, extinction analyses, historical ecology, museum records, sawfish

  • Mihelja, Darko, Sanja Kovačića, A., 2014.

    The flora of Mount Kalnik in the work Flora Croatica

    Hrvatski prirodoslovci 22(210).

    Th e paper describes the Flora Croatica − the unique work of Schlosser and Vuko- tinović. Unfortunately, the fl ora of Croatia remains unsurpassed to this day. Although their Flora was published exactly 144 years ago, and several listings of Croatian fl ora were published meanwhile, such as the Excursion fl ora by R. Domac or the Analytic fl ora of Yugoslavia (with keys for determining plants) and the online listing of Croatian fl ora ( Flora Croatica Database ), there is no real fl ora in Croatia yet. It is this which remains a task for modern generations of botanists. Th e data on the fl ora of Mount Kalnik were taken and discussed from the book Flora Croatica , and they were compared with the modern valid nomenclature

    Keywords: bibliographic analysis, ecological baselines, extinction analyses, historical ecology, museum records, sawfish

  • Vilaça, S., Biosa, D., Zachos, F., Iacolina, L., Kirschning, J., Alves, P., Paule, L., Gortazar, C., Mamuris, Z., Jędrzejewska, B., Borowik, T., Sidorovich, V., Kusak, J., Costa, S., Schley, L., Hartl, G., Apollonio, M., Bertorelle, G., Scandura, M., 2014.

    Mitochondrial phylogeography of the European wild boar: the effect of climate on genetic diversity and spatial lineage sorting across Europe

    Journal of Biogeography 41(5) 987-998.

    Aim: Climate changes in the past had a deep impact on the evolutionary history of many species and left genetic signatures that are often still detectable today. We investigated the geographical pattern of mitochondrial DNA divesity in the European wild boar (Sus scrofa). Our final aims were to clarify the influence of present and past climatic conditions, infer the geographical posi- tion of glacial refugia, and suggest post-glacial spatial dynamics. Location: Europe. Methods: D-loop sequences were obtained for 763 individuals from Portugal to western Russia. Phylogenetic, multivariate and interpolation methods were used to describe the genetic and geographical patterns. Climatic suitability during the Last Glacial Maximum (LGM) was predicted using MaxEnt. The effect of present and past suitability on the observed patterns of diversity was evaluated by multiple linear regression. Results: We confirmed the existence of a ubiquitous mitochondrial clade in Europe (E1), an endemic clade in Italy (E2) and a few East Asian haplotypes (A), presumably introgressed from domestic pigs. No Near Eastern haplotypes were detected. Genetic divergence was not simply related to geographical distance. A clear south–north decreasing gradient of diversity was observed, with maximum levels in putative glacial refugia. Latitudinal variation in climatic conditions during the LGM was shown to be a good predictor of current genetic diversity. Moreover, an unexpected similarity between Iberia and east- ern Europe was observed, while central European populations showed a higher affinity to the Italian gene pool. Main conclusions: The current distribution of mitochondrial genetic diversity was highly influenced by past climatic events, especially those related to the LGM, and is consistent with a major contribution of the Italian peninsula and the Balkans to the post-glacial recolonization of northern areas. More recent processes, such as restocking and extensive hunting, probably acted at rather local scales, without great impact on the global pattern of mitochondrial diversity.

    Keywords: Climate change, Last Glacial Maximum, Sus scrofa, genetic differentiation, glacial refugia, mtDNA, phylogeography

  • Mestre, A., Aguilar-Alberola, J., Baldry, D., Balkis, H., Ellis, A., Gil-Delgado, J., Grabow, K., Klobučar, G., Kouba, A., Maguire, I., Martens, A., Mülayim, A., Rueda, J., Scharf, B., Soes, M., S. Monrós, J., Mesquita-Joanes, F., 2013.

    Invasion biology in non-free-living species: interactions between abiotic (climatic) and biotic (host availability) factors in geographical space in crayfish commensals (Ostracoda, Entocytheridae)

    Ecology and Evolution 3(16) 5237-5253.

    In invasion processes, both abiotic and biotic factors are considered essential, but the latter are usually disregarded when modeling the potential spread of exo- tic species. In the framework of set theory, interactions between biotic (B), abi- otic (A), and movement-related (M) factors in the geographical space can be hypothesized with BAM diagrams and tested using ecological niche models (ENMs) to estimate A and B areas. The main aim of our survey was to evaluate the interactions between abiotic (climatic) and biotic (host availability) factors in geographical space for exotic symbionts (i.e., non-free-living species), using ENM techniques combined with a BAM framework and using exotic Entocythe- ridae (Ostracoda) found in Europe as model organisms. We carried out an extensive survey to evaluate the distribution of entocytherids hosted by crayfish in Europe by checking 94 European localities and 12 crayfish species. Both exotic entocytherid species found, Ankylocythere sinuosa and Uncinocythere occidentalis, were widely distributed in W Europe living on the exotic crayfish species Pro- cambarus clarkii and Pacifastacus leniusculus, respectively. No entocytherids were observed in the remaining crayfish species. The suitable area for A. sinuosa was mainly restricted by its own limitations to minimum temperatures in W and N Europe and precipitation seasonality in circum-Mediterranean areas. Uncinocy- there occidentalis was mostly restricted by host availability in circum-Mediterra- nean regions due to limitations of P. leniusculus to higher precipitation seasonality and maximum temperatures. The combination of ENMs with set the- ory allows studying the invasive biology of symbionts and provides clues about biogeographic barriers due to abiotic or biotic factors limiting the expansion of the symbiont in different regions of the invasive range. The relative importance of abiotic and biotic factors on geographical space can then be assessed and applied in conservation plans. This approach can also be implemented in other systems where the target species is closely interacting with other taxa.

    Keywords: bam diagrams, biological invasions, ecological niche models, host availability

  • Vences, M., Hauswaldt, J., Steinfartz, S., Rupp, O., Goesmann, A., Künzel, S., Orozco-terWengel, P., Vieites, D., Nieto-Román, S., Haas, S., Laugsch, C., Gehara, M., Bruchmann, S., Pabijan, M., Ludewig, A., Rudert, D., Angelini, C., Borkin, L., Crochet, P., Crottini, A., Dubois, A., Ficetola, G., Galán, P., Geniez, P., Hachtel, M., Jovanovic, O., Litvinchuk, S., Lymberakis, P., Ohler, A., Smirnov, N., 2013.

    Radically different phylogeographies and patterns of genetic variation in two European brown frogs, genus Rana

    Molecular Phylogenetics and Evolution 68(3) 657-70.

    We reconstruct range-wide phylogeographies of two widespread and largely co-occurring Western Palearctic frogs, Rana temporaria and R. dalmatina. Based on tissue or saliva samples of over 1000 individuals, we compare a variety of genetic marker systems, including mitochondrial DNA, single-copy protein-coding nuclear genes, microsatellite loci, and single nucleotide polymorphisms (SNPs) of transcriptomes of both species. The two focal species differ radically in their phylogeographic structure, with R. temporaria being strongly variable among and within populations, and R. dalmatina homogeneous across Europe with a single strongly differentiated population in southern Italy. These differences were observed across the various markers studied, including microsatellites and SNP density, but especially in protein-coding nuclear genes where R. dalmatina had extremely low heterozygosity values across its range, including potential refugial areas. On the contrary, R. temporaria had comparably high range-wide values, including many areas of probable postglacial colonization. A phylogeny of R. temporaria based on various concatenated mtDNA genes revealed that two haplotype clades endemic to Iberia form a paraphyletic group at the base of the cladogram, and all other haplotypes form a monophyletic group, in agreement with an Iberian origin of the species. Demographic analysis suggests that R. temporaria and R. dalmatina have genealogies of roughly the same time to coalescence (TMRCA ~3.5 mya for both species), but R. temporaria might have been characterized by larger ancestral and current effective population sizes than R. dalmatina. The high genetic variation in R. temporaria can therefore be explained by its early range expansion out of Iberia, with subsequent cycles of differentiation in cryptic glacial refugial areas followed by admixture, while the range expansion of R. dalmatina into central Europe is a probably more recent event.

    Keywords: bam diagrams, biological invasions, ecological niche models, host availability

  • Gérard, P., Temunović, M., Sannier, J., Bertolino, P., Dufour, J., Frascaria-Lacoste, N., Fernández-Manjarrés, J., 2012.

    Chilled but not frosty: understanding the role of climate in the hybridization between the Mediterranean Fraxinus angustifolia Vahl and the temperate Fraxinus excelsior L. (Oleaceae) ash trees

    Journal of Biogeography online.

    Aim To examine mechanisms related to the formation of hybrid zones between the Mediterranean narrow-leaved ash tree Fraxinus angustifolia Vahl and the common ash Fraxinus excelsior L., a mostly temperate tree species, at the continental scale. Location Temperate and Mediterranean Europe and the western part of the Black Sea basin. Methods We used species distribution models to determine the potential zones of sympatry between the two species, which remain largely unknown. In addition, we analysed 58 populations and 456 samples of ash tree that spanned most of the distribution of the two species across Europe, and included both parental species and selected hybrid populations. Levels of hybridization in the 58 populations were estimated using 19 nuclear microsatellite loci, including six anonymous nuclear single sequence repeat (SSR) markers and 13 recently developed single sequence repeats from expressed RNA sequence tags (EST-SSRs). Results Bayesian assignment supported the notion of two separate gene pools regardless of the type of marker used, which suggest an ancient population structure. Populations located within the predicted overlap zones had intermediate levels of admixture with a tendency for hybrid populations to occur towards temperate areas. Selection analyses indicated that six of the EST-SSRs had been subjected to stabilizing selection whereas two others had been subjected to directional selection. Results of spatial filtering on the allele frequencies of the loci under directional selection suggest that the number of days of frost and summer temperatures are both ecological factors that can limit the extent of the hybrid zone. Moreover, areas associated with known or predicted hybrid zones showed abrupt changes in allele frequencies compared with the periphery of the distributions. Main conclusions Our analyses suggest that the hybrid structure in these closely related ash species is ancient and asymmetric and that climate-driven selection, in particular cold weather, can potentially limit the extent of hybrid populations.

    Keywords: Europe, Fraxinus, Oleaceae, climate-driven selection, distribution models, hybrid zones, species distribution models