Uses of GBIF in scientific research

Peer-reviewed research citing GBIF as a data source, with at least one author from France.
For all researches, please visit our "Peer-reviewed publications" page.

List of publications

  • Bellard C, Genovesi P, Jeschke J (2016)

    Global patterns in threats to vertebrates by biological invasions

    Proceedings of the Royal Society B: Biological Sciences 283(1823) 20152454.

    Biological invasions as drivers of biodiversity loss have recently been challenged. Fundamentally, we must know where species that are threatened by invasive alien species (IAS) live, and the degree to which they are threatened. We report the first study linking 1372 vertebrates threatened by more than 200 IAS from the completely revised Global Invasive Species Database. New maps of the vulnerability of threatened vertebrates to IAS permit assessments of whether IAS have a major influence on biodiversity, and if so, which taxonomic groups are threatened and where they are threatened. We found that centres of IAS-threatened vertebrates are concentrated in the Americas, India, Indonesia, Australia and New Zealand. The areas in which IAS-threatened species are located do not fully match the current hotspots of invasions, or the current hotspots of threatened species. The relative importance of biological invasions as drivers of biodiversity loss clearly varies across regions and taxa, and changes over time, with mammals from India, Indonesia, Australia and Europe are increasingly being threatened by IAS. The chytrid fungus primarily threatens amphibians, whereas invasive mammals primarily threaten other vertebrates. The differences in IAS threats between regions and taxa can help efficiently target IAS, which is essential for achieving the Strategic Plan 2020 of the Convention on Biological Diversity.


  • Bellard C, Leroy B, Thuiller W, Rysman J, Courchamp F (2016)

    Major drivers of invasion risks throughout the world

    Ecosphere 7(3).

    In this paper, we investigate how climate, land use, habitat characteristics, and socioeconomic activities contribute to predict the current potential distributions of the “100 among the world's worst invasive alien species”. We calculated the predictive power of each of the 41 variables for the 95 species including a large number of plants, vertebrates and invertebrates. We then calibrated the species distribution models with a set of appropriate variables for each invasive alien species to predict the potential distribution of these species and identify the major regions of origin of the invasive alien species. We found that climate variables were primarily predictors of the distribution of the global invaders studied. In addition, the habitat characteristics were also important predictors following by the socioeconomic variables such as the nearest distance to airports, seaports and human population density. We show that the potential areas at the highest risk of invasions from these species are located in Western Europe, Eastern United States, Central America, the eastern coast of Australia, and some Indonesian islands. We argue that these potential hotspots of invasions should be monitored in priority to prevent new invasions from these species. This study provides evidence of the importance of considering both habitat characteristics, socioeconomic and climate change factors for the current and future predictions of biological invasions.

    Keywords: invasive species, socioeconomic, spatial risk


  • Bocksberger G, Schnitzler J, Chatelain C, Daget P, Janssen T, Schmidt M et al. (2016)

    Climate and the distribution of grasses in West Africa

    Journal of Vegetation Science.

    Questions Which environmental variables influence grass diversity in West Africa? What are the effects of climate and grass functional traits on the spatial patterns (richness and abundance) of the grass clades Andropogoneae, Paniceae and Chloridoideae? Location West Africa, demarcated by the Atlantic Ocean in the west and south (20° W and 4° N), the Sahara desert in the north (25° N) and the border between Niger and Chad in the east (20° E). Methods Based on 38 912 georeferenced occurrence records, we modelled the distribution of 302 grass species (51% of West African grass diversity). We integrated species richness, abundance and functional traits (life cycle, photosynthetic type and height) to determine the contribution of the most speciose grass clades (Andropogoneae, Paniceae and Chloridoideae) to overall grass diversity in West Africa. Results Precipitation is the variable most often influencing the species distribution models of grasses in West Africa. Richness and relative abundance of the tribe Andropogoneae show a centre of diversity in Sudanian savanna regions. The height of Andropogoneae species, generally >150 cm, is driving this ecological dominance. Species richness of the tribe Paniceae is more dispersed and shows two main centres of abundance: The southern regions with higher mean annual precipitation and tree density are dominated by C3 Paniceae species. The Sahelian regions in the north are dominated by short Paniceae species with the C4 NAD-ME photosynthetic subtype, as well as Chloridoideae possessing the same functional attributes. Conclusions Our study provides insight into the environmental correlates of grass species richness in West Africa and contributes to the much-needed research on tropical rangelands. Moreover, the integration of evolutionary history significantly improves our understanding of large-scale biodiversity patterns.

    Keywords: Andropogoneae, Chloridoideae, Maxent, Paniceae, Poaceae, Savanna, Species distribution modelling, West Africa, species richness


  • Boucher F, Lavergne S, Basile M, Choler P, Aubert S (2016)

    Evolution and biogeography of the cushion life form in angiosperms

    Perspectives in Plant Ecology, Evolution and Systematics 20 22-31.

    Cushion-forming species occur in all cold and dry environments worldwide, where they play important engineering roles. Understanding the origins of cushion plants may thus provide insights into the evolutionary assembly of biomes under extreme climatic conditions. Here we investigate the evolutionary and biogeographic history of cushions in Angiosperms based on a global checklist of all cushion plants, along with phylogenetic, climatic, and biogeographic information. Our aim is to measure the frequency of this evolutionary convergence and to identify its historic, environmental, and biogeographic drivers. We show that cushions appeared at least 115 times in Angiosperms and that they mainly belong to families that occupy the coldest and driest environments on Earth. We found that cushions have intensively diversified in the Himalayas, the Andes, or New Zealand, while other regions like Patagonia have probably been hubs enabling cushion species to migrate between different alpine regions. We conclude that the cushion life form is a remarkable example of convergent key innovation, which has favored the colonization of cold and dry habitats.

    Keywords: Alpine, Angiosperms, Arctic, Biogeography, Cushion plants, Evolutionary convergence


  • Deblauwe V, Droissart V, Bose R, Sonké B, Blach-Overgaard A, Svenning J et al. (2016)

    Remotely sensed temperature and precipitation data improve species distribution modelling in the tropics

    Global Ecology and Biogeography.

    Aim Species distribution modelling typically relies completely or partially on climatic variables as predictors, overlooking the fact that these are themselves predictions with associated uncertainties. This is particularly critical when such predictors are interpolated between sparse station data, such as in the tropics. The goal of this study is to provide a new set of satellite-based climatic predictor data and to evaluate its potential to improve modelled species–climate associations and transferability to novel geographical regions. Location Rain forests areas of Central Africa, the Western Ghats of India and South America. Methods We compared models calibrated on the widely used WorldClim station-interpolated climatic data with models where either temperature or precipitation data from WorldClim were replaced by data from CRU, MODIS, TRMM and CHIRPS. Each predictor set was used to model 451 plant species distributions. To test for chance associations, we devised a null model with which to compare the accuracy metric obtained for every species. Results Fewer than half of the studied rain forest species distributions matched the climatic pattern better than did random distributions. The inclusion of MODIS temperature and CHIRPS precipitation estimates derived from remote sensing each allowed for a better than random fit for respectively 40% and 22% more species than models calibrated on WorldClim. Furthermore, their inclusion was positively related to a better transferability of models to novel regions. Main conclusions We provide a newly assembled dataset of ecologically meaningful variables derived from MODIS and CHIRPS for download, and provide a basis for choosing among the plethora of available climate datasets. We emphasize the need to consider the method used in the production of climate data when working on a region with sparse meteorological station data. In this context, remote sensing data should be the preferred choice, particularly when model transferability to novel climates or inferences on causality are invoked.

    Keywords: Association test, CHIRPS, GLM, MODIS, MaxEnt, TRMM, WorldClim, ecological niche model, habitat suitability, null model


  • Fletcher D, Gillingham P, Britton J, Blanchet S, Gozlan R, Stohlgren T et al. (2016)

    Predicting global invasion risks: a management tool to prevent future introductions

    Scientific Reports 6 26316.

    Predicting regions at risk from introductions of non-native species and the subsequent invasions is a fundamental aspect of horizon scanning activities that enable the development of more effective preventative actions and planning of management measures. The Asian cyprinid fish topmouth gudgeon Pseudorasbora parva has proved highly invasive across Europe since its introduction in the 1960s. In addition to direct negative impacts on native fish populations, P. parva has potential for further damage through transmission of an emergent infectious disease, known to cause mortality in other species. To quantify its invasion risk, in regions where it has yet to be introduced, we trained 900 ecological niche models and constructed an Ensemble Model predicting suitability, then integrated a proxy for introduction likelihood. This revealed high potential for P. parva to invade regions well beyond its current invasive range. These included areas in all modelled continents, with several hotspots of climatic suitability and risk of introduction. We believe that these methods are easily adapted for a variety of other invasive species and that such risk maps could be used by policy-makers and managers in hotspots to formulate increased surveillance and early-warning systems that aim to prevent introductions and subsequent invasions.

    Keywords: Association test, CHIRPS, GLM, MODIS, MaxEnt, TRMM, WorldClim, ecological niche model, habitat suitability, null model


  • Fried G, Caño L, Brunel S, Beteta E, Charpentier A, Herrera M et al. (2016)

    Monographs on Invasive Plants in Europe: Baccharis halimifolia L.

    Botany Letters 1-27.

    AbstractThis account presents information on all aspects of the biology and ecology of Baccharis halimifolia L. that are relevant to understanding its invasive behaviour. The main topics are presented within the framework of the new series of Botany Letters on Monographs on invasive plants in Europe: taxonomy, distribution, history of introduction and spread, ecology (including preferred climate and habitats, responses to abiotic and biotic factors, ecological interactions), biology (including physiology, phenology and reproductive biology), impacts and management. Baccharis halimifolia L. (Asteraceae), groundsel bush, is a broad-leaved shrub native to the coastal area of southeastern North America. Introduced for ornamental and amenity purposes during the nineteenth century, it has become naturalized in several coastal habitats, as well as in disturbed areas of western Europe. The shrub is now common on the Atlantic coast of Europe from northern Spain to Belgium and it is an emerging problem on the Medit...

    Keywords: Biogeography, climate, ecophysiology, environmental impacts, germination, habitats, invasion history, management strategies, natural enemies, reproductive biology, salinity, species distribution modelling


  • Gallien L, Thuiller W, Fort N, Boleda M, Alberto F, Rioux D et al. (2016)

    Is There Any Evidence for Rapid, Genetically-Based, Climatic Niche Expansion in the Invasive Common Ragweed?

    PloS one 11(4) e0152867.

    Climatic niche shifts have been documented in a number of invasive species by comparing the native and adventive climatic ranges in which they occur. However, these shifts likely represent changes in the realized climatic niches of invasive species, and may not necessarily be driven by genetic changes in climatic affinities. Until now the role of rapid niche evolution in the spread of invasive species remains a challenging issue with conflicting results. Here, we document a likely genetically-based climatic niche expansion of an annual plant invader, the common ragweed (Ambrosia artemisiifolia L.), a highly allergenic invasive species causing substantial public health issues. To do so, we looked for recent evolutionary change at the upward migration front of its adventive range in the French Alps. Based on species climatic niche models estimated at both global and regional scales we stratified our sampling design to adequately capture the species niche, and localized populations suspected of niche expansion. Using a combination of species niche modeling, landscape genetics models and common garden measurements, we then related the species genetic structure and its phenotypic architecture across the climatic niche. Our results strongly suggest that the common ragweed is rapidly adapting to local climatic conditions at its invasion front and that it currently expands its niche toward colder and formerly unsuitable climates in the French Alps (i.e. in sites where niche models would not predict its occurrence). Such results, showing that species climatic niches can evolve on very short time scales, have important implications for predictive models of biological invasions that do not account for evolutionary processes.

    Keywords: Biogeography, climate, ecophysiology, environmental impacts, germination, habitats, invasion history, management strategies, natural enemies, reproductive biology, salinity, species distribution modelling


  • Gherghel I, Papeş M, Brischoux F, Sahlean T, Strugariu A (2016)

    A revision of the distribution of sea kraits (Reptilia, Laticauda) with an updated occurrence dataset for ecological and conservation research

    ZooKeys 569 135-148.

    The genus Laticauda (Reptilia: Elapidae), commonly known as sea kraits, comprises eight species of marine amphibious snakes distributed along the shores of the Western Pacific Ocean and the Eastern Indian Ocean. We review the information available on the geographic range of sea kraits and analyze their distribution patterns. Generally, we found that south and south-west of Japan, Philippines Archipelago, parts of Indonesia, and Vanuatu have the highest diversity of sea krait species. Further, we compiled the information available on sea kraits’ occurrences from a variety of sources, including museum records, field surveys, and the scientific literature. The final database comprises 694 occurrence records, with L. colubrina having the highest number of records and L. schistorhyncha the lowest. The occurrence records were georeferenced and compiled as a database for each sea krait species. This database can be freely used for future studies.

    Keywords: Amphibious snakes, Elapidae, distribution, geodatabase, marine, open access, sea snakes


  • Godefroid M, Rasplus J, Rossi J (2016)

    Is phylogeography helpful for invasive species risk assessment? The case study of the bark beetle genus Dendroctonus ?

    Ecography.

    Despite evidence that conspecific lineages may display different climatic tolerances, most invasion risk assessment tools are calibrated without considering phylogeographic information. This study aims to investigate the existence of intraspecific niche divergence within a group of insect pests and to explore how the inclusion of phylogeographic information into species distribution models may alter the estimation of the potential distribution of a species. We studied North American bark beetles belonging to the genus Dendroctonus, a group of pests of conifers that are listed as quarantine species in numerous countries. Most Dendroctonus species exhibit strong genetic divergence that appears to be geographically structured and shaped by historical events and biotic factors. We modeled all lineage distributions within five species, using MaxEnt and Boosted Regression Trees, and compared the results with the models fitted at the species scale. Multivariate analysis and niche similarity and equivalency tests were additionally performed to investigate the existence and magnitude of climatic niche divergence between conspecific lineages. We also tested the ability of lineage-based models to predict the region invaded by D. valens in China. Conspecific lineages showed a climatic niche more similar than expected by chance, but displayed different climatic envelopes in their native range and, consequently, different estimates of potential distributions. We also observed that classical models calibrated using the entire range of the species could potentially under- or overestimate the potential range of the species when compared to a global prediction built by aggregating lineage-based projections. This study showed that the invasive phylogeographic lineage of D. valens has invaded regions characterized by climatic conditions highly similar to those encountered in its native range suggesting that preadaptations to environment might have played a role in this invasion. This study highlights how our perception of the invasion risk of pests may be altered when integrating phylogeographic information

    Keywords: DNA barcoding, Dendroctonus, Pinus., assessment, bark beetles, biological invasion, climate matching, phylogeography, quarantine pests, risk, species distribution models