Uses of GBIF in scientific research

Peer-reviewed research citing GBIF as a data source, with at least one author from Spain.
Extracted from the Mendeley GBIF Public Library.

List of publications

  • Aguilla, A., Arnau, V., 2015.

    RUMEX VESICARIUS L. (POLYGONACEAE), NEÓFITO PARA LA FL ORA VALENCIANA (ESPAÑA, MEDITERR ÁNEO OCCIDENTAL)

    Flora Montiberica 59 29-33.

    Rumex vesicarius L. (Polygonaceae), neophyte for the Valen- cian Flora (Spain, Western Mediterranean) . A neophyte for the Valencian flora, Bladder dock ( Rumex vesicarius , L.), is reported. The species was found at lowlands in the surroundings of Sagunto (Valencia), cl ose to the Mediterranean Sea. Plants formed a single population with 131 individua ls occupying 4.7 ha. A brief descrip- tion of the species is given and its genera l distribution and around the Mediterranean are reviewed, emphasizing its invasive potential. Key words : Rumex vesicarius L., Floristics, Neophyte, Invasi veness, Chorology, Valencia , Spain, Western Mediterra- nean.


  • Bradley, B., Early, R., Sorte, C., 2015.

    Space to invade? Comparative range infilling and potential range of invasive and native plants

    Global Ecology and Biogeography n/a-n/a.

    Aim Our understanding of potential ranges for native and non-native species is often based on their current geographic distributions. Non-native species have had less time than co-occurring native species to expand their ranges following introduction, so non-native ranges may under-represent suitable conditions. Therefore it is often assumed that species distribution models will predict disproportionately smaller potential ranges for non-natives than natives. We compare the distributions of native, endemic, alien and invasive plants to determine how the different range attributes of these groups might influence ecological forecasting. Location Continental USA. Methods We compared the geographic ranges of 13,575 plant species (9402 native, 2397 endemic, 1201 alien and 755 invasive) using (1) US only and (2) global distribution data from herbarium records. We calculated US longitudinal and latitudinal range extents as potential indicators of range-limiting factors, modelled potential range based on climate using principal components analysis, and calculated occupancy of potential ranges (range infilling). Results Contrary to expectations, modelled potential ranges were significantly larger for non-natives than natives, even for species with few occurrences. Distributions of native species, not invasive species, appeared strongly limited longitudinally. However, invasive plants occupied substantially less area within their climatically suitable ranges than native plants (lower range infilling). Main conclusions Invasive plant distributions were consistently broader, both climatically and geographically, than comparable native species. This suggests that invasive plant distribution models at regional scales are not underpredicting potential ranges relative to models for native species. In contrast, the comparatively limited longitudinal ranges of native species suggest a high degree of non-climatic limitation, which is likely to cause distribution models to underpredict the potential ranges of native species. Invasive plants have not achieved the degree of range infilling expected relative to natives. Thus, plants introduced to the US still have plenty of space to invade.

    Keywords: Alien, bioclimatic envelope model, dispersal, ecological niche model, equilibrium, exotic, introduced, occupancy, plant invasion


  • Chung, M., López-Pujol, J., Chung, J., Kim, K., Park, S., Chung, M., 2015.

    Polyploidy in Lilium lancifolium: Evidence of autotriploidy and no niche divergence between diploid and triploid cytotypes in their native ranges

    Flora - Morphology, Distribution, Functional Ecology of Plants 213 57-68.

    Lilium lancifolium, the tiger lily, constitutes a polyploid complex with both diploids (reproduced by seeds and bulbils) and triploids (propagated exclusively via bulbils). An autopolyploid origin for the triploid forms has been previously suggested based on classical cytogenetics, chromosome mapping techniques, ecological data, and geographic distribution in their native range (Korea and the Japanese Tsushima Island). Using 13 allozyme loci, we comparatively assessed clonal structure and levels of genetic diversity in four diploid and 11 triploid populations in South Korea to test the autopolyploid origin of the triploid cytotype and to infer which seedling recruitment strategy is operating within the diploid populations. We also employed ecological niche modeling and multivariate analysis to determine whether triploids of L. lancifolium occupy different and broader niches to those of diploids in Korea and Tsushima Island. The diploids harbored higher levels of within-population genetic diversity than triploids, and allele profiles found in triploids were exactly subsets of those in diploids. Repeated seedling recruitment was inferred for the diploids, whereas all the studied triploid populations were monoclonal since there is no seedling (sexual) recruitment. Although we found no niche divergence between cytotypes of L. lancifolium, the triploids have a broader niche breadth. Genetic data further confirm the autotriploid origin of L. lancifolium, and the lack of a clear, strong evidence for niche divergence between cytotypes of L. lancifolium supports the view that ecological differentiation is not a pre-requisite for the establishment of new polyploid lineages.

    Keywords: Clonal diversity, Conservation, Diploids, Ecological niche modeling (ENM), Genetic diversity, Lilium lancifolium, MaxEnt, Origin, Triploids


  • Clavero, M., Hermoso, V., 2015.

    Historical data to plan the recovery of the European eel

    Journal of Applied Ecology 52(4) 960-968.

    Long-term perspectives are critical to understand contemporary ecological systems. However, historical data on the distribution of biodiversity have only rarely been used in applied environmental sciences. Here, we use historical sources to reconstruct the historical range of the European eel, a critically endangered species. We then use this baseline range to set range targets for the recovery of the European eel, as opposed to the abundance-based targets established by the European Union, which are constrained by the poor information on pre-collapse stocks. We collected over 10 000 historical freshwater fish records from Spain in the 19th and 16th centuries, as well as over 25 000 records from the global biodiversity information facility (GBIF) to characterize historical and current European eel distribution in the Iberian Peninsula. We converted fish records into an eel presence–absence data set using subcatchment as spatial unit of analysis and modelled eel distribution in the different historical periods. The eel was historically widespread throughout the Iberian Peninsula, but it has lost over 80% of its original range, mainly due to river fragmentation by dams. Distribution models applied to 16th- and 19th-century data showed a high agreement, supporting the use of the 19th-century estimated distribution as a baseline range. We identified the number and identity of dams that should be made passable for accomplishing specific range recovery targets, for example showing that acting upon 20 dams would make available 60% of the baseline eel range. Synthesis and applications. This work exemplifies how insights gained from historical ecology can support and guide present-day management of migratory fishes. Similar approaches could be developed throughout Europe to plan the recovery of the eel, since there are large amounts of historical eel records. Historical baseline ranges for the eel range should be incorporated into the European Union legal mandates aimed at the recovery of the species.

    Keywords: Anguilla anguilla, conservation targets, dams, distribution changes, historical ecology, reference conditions, river fragmentation


  • Ferretti, F., Morey Verd, G., Seret, B., Sulić Šprem, J., Micheli, F., 2015.

    Falling through the cracks: the fading history of a large iconic predator

    Fish and Fisheries n/a-n/a.

    Human impact on the oceans predates scientific observation, which for many animal populations has captured only recent changes. Such a limited knowledge can hamper finding optimal management and conservation strategies including setting appropriate recovery targets. Sawfishes are among the most endangered marine vertebrates in the ocean. Historical human impacts have resulted in sawfish extinction in many coastal areas around the world; however, in the Mediterranean Sea, their past presence and possible extinction have been debated for decades. Recently, it was concluded that the region never hosted resident populations because of unsuitable environmental conditions. Through an extensive bibliographic and archival search and an extinction analysis, we reconstructed the history of sawfishes in the Mediterranean Sea. Between 1576 and 1959, there were 48 independent accounts of the occurrence of two sawfish species (Pristis pristis, Pristidae and Pristis pectinata, Pristidae), including 24 documented catches. Sawfishes were mainly recorded in the western Mediterranean, in areas close to large rivers with light human impact. Most of the documented individuals were juveniles, suggesting local parturition. Extinction analyses yielded variable results and were affected by the sparseness of records but suggested that both species went extinct in the Mediterranean Sea in the 1960s–1970s. Our results challenge current assumptions on sawfish ecology and biogeography, offer new options for sawfish conservation in the Atlantic and highlight the importance of historical analyses for reconstructing ecosystem baselines and setting recovery targets.

    Keywords: bibliographic analysis, ecological baselines, extinction analyses, historical ecology, museum records, sawfish


  • García-Roselló, E., Guisande, C., Manjarrés-Hernández, A., González-Dacosta, J., Heine, J., Pelayo-Villamil, P., González-Vilas, L., Vari, R., Vaamonde, A., Granado-Lorencio, C., Lobo, J., 2015.

    Can we derive macroecological patterns from primary Global Biodiversity Information Facility data?

    Global Ecology and Biogeography n/a-n/a.

    Aim To determine whether the method used to build distributional maps from raw data influences the representation of two principal macroecological patterns: the latitudinal gradient in species richness and the latitudinal variation in range sizes (Rapoport's rule). Location World-wide. Methods All available distribution data from the Global Biodiversity Information Facility (GBIF) for those fish species that are members of orders of fishes with only marine representatives in each order were extracted and cleaned so as to compare four different procedures: point-to-grid (GBIF maps), range maps applying an α-shape [GBIF-extent of occurrence (EOO) maps], the MaxEnt method of species distribution modelling (GBIF-MaxEnt maps) and the MaxEnt method but restricted to the area delimited by the α-shape (GBIF-MaxEnt-restricted maps). Results The location of hotspots and the latitudinal gradient in species richness or range sizes are relatively similar in the four procedures. GBIF-EOO maps and most GBIF-MaxEnt-maps provide overestimations of species richness when compared with those present in a priori well-surveyed cells. GBIF-EOO maps seem to provide more reasonable world macroecological patterns. MaxEnt can erroneously predict the presence of species in environmentally similar cells of another hemisphere or in other regions that lie outside the range of the species. Limiting this overpredictive capacity, as in the case of GBIF-MaxEnt-restricted maps, seems to mimic the frequency of observations derived from a simple point-to-grid procedure, with the utility of this procedure consequently being limited. Main conclusions In studies of macroecological patterns at a global scale, the simple α-shape method seems to be a more parsimonious option for extrapolating species distributions from primary data than are distribution models performed indiscriminately and automatically with MaxEnt. GBIF data may be used in macroecological patterns if original data are cleaned, autocorrelation is corrected and species richness figures do not constitute obvious underestimations. Efforts therefore should focus on improving the number and quality of records that can serve as the source of primary data in macroecological studies.

    Keywords: Distribution models, GBIF, Rapoport' rule, macroecological patterns, marine fishes, point-to-grid, range maps


  • González-Moreno, P., Diez, J., Richardson, D., Vilà, M., 2015.

    Beyond climate: disturbance niche shifts in invasive species

    Global Ecology and Biogeography n/a-n/a.

    Aim Analysing how species niches shift between native and introduced ranges is a powerful tool for understanding the determinants of species distributions and for anticipating range expansions by invasive species. Most studies only consider the climatic niche, by correlating widely available presence-only data with regional climate. However, habitat characteristics and disturbance also shape species niches, thereby potentially confounding shifts attributed only to differences in climate. Here we used presence and abundance data for Oxalis pes-caprae, a species native to South Africa and invading areas globally, to understand how niche shifts may be influenced by disturbance at habitat and landscape scales in addition to climate. Locality Mediterranean climate areas world-wide. Methods We used available presence-only data and also conducted extensive surveys of the abundance of Oxalis (c. 11,000 plots) across different habitats in South Africa and in the introduced range in the Mediterranean Basin. We extended principal component analysis methods for measuring niche shifts by using Bayesian generalized linear models to identify climatic and disturbance niche shifts. Results We found a large climatic niche expansion towards stronger seasonality and lower temperature in the introduced range, but this expansion was greatly reduced when considering only conditions available in both ranges. Oxalis occupied more natural landscapes in the native range that remained unoccupied in the introduced range (‘niche unfilling’). In contrast to the similar abundances in natural and disturbed habitats in its native range, Oxalis was more abundant in disturbed habitats in the introduced range. Conclusions The large climatic niche expansion most likely reflects significant plasticity of Oxalis rather than rapid evolution. Furthermore, the unfilling of its disturbance niche in the introduced range suggests high potential for further invasion of natural areas. Together, these findings suggest that the potential for future spread of invasive species may be underestimated by approaches that characterize species niches based only on climate or partial information about their distributions.

    Keywords: Bayesian, Oxalis pes-caprae, biological invasions, invasion risk, niche conservatism, non-native species, reciprocal distribution modelling


  • MANSANET-SALVADOR; C. J., FERRER-GALLEGO, P. P., FERRANDO, I., LAGUNA, E., 2015.

    NOTAS SOBRE EL COMP LEJO TAXONÓMICO CARDAMINE FLEXUOSA WITH. (CRUCIFERAE) Y SU PRESENCIA EN LA CO MUNIDAD VALENCIANA

    Flora Montiberica 59 72-82.

    Se comunica la presencia de Cardamine flexuosa With. s. str. co- mo primera cita para la Comunidad Valenciana y de Cardamine flexuosa subsp. de- bilis O. E. Schulz como primera cita para la provincia de Valencia. Se repasan cier- tos aspectos nomenclatural es, taxonómicos, corológicos y ecológicos referentes a los dos táxones, así como de Cardamine hirsuta L., especie morfológicamente afín. Se propone una clave dicotómica para la identificación y discriminación de estos tres táxones. Se informa sobre la probable vía de entrada de C. flexuosa s.l. y se eva- lúa su estado como posible potencial invasor. Palabras clave : Cardamine flexuosa subsp. debilis , taxonomía, especie alóctona, Com unidad Valenciana, Cruciferae, España.

    Keywords: Bayesian, Oxalis pes-caprae, biological invasions, invasion risk, niche conservatism, non-native species, reciprocal distribution modelling


  • Mairal, M., Pokorny, L., Aldasoro, J., Alarcón, M., Sanmartín, I., 2015.

    Ancient vicariance and climate-driven extinction explain continental-wide disjunctions in Africa: the case of the Rand Flora genus Canarina (Campanulaceae).

    Molecular ecology.

    Transoceanic distributions have attracted the interest of scientists for centuries. Less attention has been paid to the evolutionary origins of "continent-wide" disjunctions, in which related taxa are distributed across isolated regions within the same continent. A prime example is the "Rand Flora" pattern, which shows sister-taxa disjunctly distributed in the continental margins of Africa. Here, we explore the evolutionary origins of this pattern using the genus Canarina, with three species: C. canariensis, associated to the Canarian laurisilva, and C. eminii and C. abyssinica, endemic to the Afromontane region in East Africa, as case study. We infer phylogenetic relationships, divergence times, and the history of migration events within Canarina using Bayesian inference on a large sample of chloroplast and nuclear sequences. Ecological niche modelling was employed to infer the climatic niche of Canarina through time. Dating was performed with a novel nested approach to solve the problem that deep calibration points within a molecular dataset comprising both above-species and population-level sampling poses. Results show C. abyssinica as sister to a clade formed by disjunct C. eminii and C. canariensis. Miocene divergences were inferred among species, whereas infraspecific divergences fell within the Pleistocene-Holocene periods. Although C. eminii,and C. canariensis showed a strong genetic geographic structure, among-population divergences were older in the former than in the latter. Our results suggest that Canarina originated in East Africa and later migrated across North Africa, with vicariance and aridification-driven extinction explaining the 7000 km/ 7 million year divergence between the Canarian and East African endemics. This article is protected by copyright. All rights reserved.

    Keywords: Bayesian biogeography, climate-driven, continental islands, extinction, long-distance dispersal, nested, phylogenetic dating, vicariance


  • Ortega-Andrade, H., Prieto-Torres, D., Gómez-Lora, I., Lizcano, D., 2015.

    Ecological and geographical analysis of the distribution of the mountain tapir (Tapirus pinchaque) in Ecuador: importance of protected areas in future scenarios of global warming.

    PloS one 10(3) e0121137.

    In Ecuador, Tapirus pinchaque is considered to be critically endangered. Although the species has been registered in several localities, its geographic distribution remains unclear, and the effects of climate change and current land uses on this species are largely unknown. We modeled the ecological niche of T. pinchaque using MaxEnt, in order to assess its potential adaptation to present and future climate change scenarios. We evaluated the effects of habitat loss due by current land use, the ecosystem availability and importance of Ecuadorian System of Protected Areas into the models. The model of environmental suitability estimated an extent of occurrence for species of 21,729 km2 in all of Ecuador, mainly occurring along the corridor of the eastern Ecuadorian Andes. A total of 10 Andean ecosystems encompassed ~98% of the area defined by the model, with herbaceous paramo, northeastern Andean montane evergreen forest and northeastern Andes upper montane evergreen forest being the most representative. When considering the effect of habitat loss, a significant reduction in model area (~17%) occurred, and the effect of climate change represented a net reduction up to 37.86%. However, the synergistic effect of both climate change and habitat loss, given current land use practices, could represent a greater risk in the short-term, leading to a net reduction of 19.90 to 44.65% in T. pinchaque's potential distribution. Even under such a scenarios, several Protected Areas harbor a portion (~36 to 48%) of the potential distribution defined by the models. However, the central and southern populations are highly threatened by habitat loss and climate change. Based on these results and due to the restricted home range of T. pinchaque, its preference for upland forests and paramos, and its small estimated population size in the Andes, we suggest to maintaining its current status as Critically Endangered in Ecuador.

    Keywords: Bayesian biogeography, climate-driven, continental islands, extinction, long-distance dispersal, nested, phylogenetic dating, vicariance