Uses of GBIF in scientific research

Peer-reviewed research citing GBIF as a data source, with at least one author from Czech Republic.
For all researches, please visit our "Peer-reviewed publications" page.

List of publications

  • Dullinger I, Wessely J, Bossdorf O, Dawson W, Essl F, Gattringer A et al. (2016)

    Climate change will increase the naturalization risk from garden plants in Europe

    Global Ecology and Biogeography.

    Aim Plant invasions often follow initial introduction with a considerable delay. The current non-native flora of a region may hence contain species that are not yet naturalized but may become so in the future, especially if climate change lifts limitations on species spread. In Europe, non-native garden plants represent a huge pool of potential future invaders. Here, we evaluate the naturalization risk from this species pool and how it may change under a warmer climate. Location Europe. Methods We selected all species naturalized anywhere in the world but not yet in Europe from the set of non-native European garden plants. For this subset of 783 species, we used species distribution models to assess their potential European ranges under different scenarios of climate change. Moreover, we defined geographical hotspots of naturalization risk from those species by combining projections of climatic suitability with maps of the area available for ornamental plant cultivation. Results Under current climate, 165 species would already find suitable conditions in > 5% of Europe. Although climate change substantially increases the potential range of many species, there are also some that are predicted to lose climatically suitable area under a changing climate, particularly species native to boreal and Mediterranean biomes. Overall, hotspots of naturalization risk defined by climatic suitability alone, or by a combination of climatic suitability and appropriate land cover, are projected to increase by up to 102% or 64%, respectively. Main conclusions Our results suggest that the risk of naturalization of European garden plants will increase with warming climate, and thus it is very likely that the risk of negative impacts from invasion by these plants will also grow. It is therefore crucial to increase awareness of the possibility of biological invasions among horticulturalists, particularly in the face of a warming climate.

    Keywords: Alien species, horticulture, hotspot analysis, invasion debt, ornamental plants, species distribution model


  • Hrivnák R, Kochjarová J, Šumberová K, Schmotzer A (2016)

    Alien wetland annual Lindernia dubia (Scrophulariaceae): the first recently mentioned localities in Slovakia and their central European context

    Biologia 71(3) 281-286.

    Lindernia dubia (L.) Pennell, a Northern-American species, was recently found in two localities in central Slovakia (near Trenč and Štiavnické Bane villages) as a new species for the flora of Slovakia. Individuals of the species grew in wetland vegetation of the class Isoëto-Nano-Juncetea in both cases. The second mentioned locality probably belongs to the altitudinal maxima of L. dubia in Europe. Although the origin of L. dubia in the Slovak localities remains unknown, we suppose that zoochory or anthropochory are the most probable modes of its introduction into the territory of Slovakia.

    Keywords: Alien species, horticulture, hotspot analysis, invasion debt, ornamental plants, species distribution model


  • Jiménez-Alfaro B, García-Calvo L, García P, Acebes J (2016)

    Anticipating extinctions of glacial relict populations in mountain refugia

    Biological Conservation 201 243-251.

    Glacial relict populations at the rear-edge of species' distributions are expected to respond dramatically to climate warming, yet very few studies have compared their conservation status in current refugia. Here we combine population genetics with species distribution modelling to assess patterns and causes of extinction or persistence in two cold-adapted species, Salix hastata and Juncus balticus, which survived post-glacial retractions in calcareous fens of the Iberian Peninsula. In both species, we detected extremely-low genetic diversity and clonal strategies in red-listed populations of the most marginal region (Cantabrian Range), but high genetic diversity linked with sexual reproduction in populations from a less marginal region of the rear edge (Pyrenees). Genetic patterns were partially explained by past and present species´ climatic niches, more remarkably in the arctic-alpine S. hastata than in the boreo-atlantic J. balticus, suggesting different biogeographic history but similar sensitivity to global change. Our results show different magnitudes of extinction debt in regional populations that have survived in mountain refugia since the Last Glacial Maximum. Functional extinction of the most marginal populations can be explained by postglacial climate change and the historical decline of mire habitats. In contrast with the current trend of predicting future effects of climate change, we highlight that glacial relict populations might be currently going into extinction in climatically marginal regions. These populations can provide valuable information about the processes involved in species extinctions, improving our capacity to anticipate the effect of global change across regions and habitats.

    Keywords: Clonality, Extinction debt, Gadget timed out while loading, Genetic drift, Paleoclimate, Refugia, Relict populations


  • Mandakova T, Gloss A, Whiteman N, Lysak M (2016)

    How diploidization turned a tetraploid into a pseudotriploid

    American Journal of Botany ajb.1500452-.

    PREMISE OF THE STUDYDespite being highly fertile and occupying a large geographic region, the North American heartleaf bittercress (Cardamine cordifolia; Brassicaceae) has a puzzling triploid-like chromosome number (2n = 3x = 24). As most triploids are sterile, we embarked on a detailed analysis of the C. cordifolia genome to elucidate its origin and structure. METHODSMitotic and meiotic chromosome complement of C. cordifolia was analyzed by comparative chromosome painting using chromosome-specific BAC contigs of Arabidopsis thaliana. Resulting chromosome patterns were documented by multicolor fluorescence microscopy and compared with known ancestral and extant Brassicaceae genomes. KEY RESULTSWe discovered that C. cordifolia is not a triploid hybrid but a diploidized tetraploid with the prevalence of regular, diploid-like meiotic pairing. The ancestral tetraploid chromosome number (2n = 32) was reduced to a triploid-like number (2n = 24) through four terminal chromosome translocations. CONCLUSIONSThe structure of the pseudotriploid C. cordifolia genome results from a stepwise diploidization process after whole-genome duplication. We showed that translocation-based descending dysploidy (from n = 16 to n = 12) was mediated by the formation of five new chromosomes. The genome of C. cordifolia represents the diploidization process in statu nascendi and provides valuable insights into mechanisms of postpolyploidy rediploidization in land plants. Our data further suggest that chromosome number alone does not need to be a reliable proxy of species evolutionary past and that the same chromosome number may originate either by polyploidization (hybridization) or due to descending dysploidy.

    Keywords: Brassicaceae, centromere loss, chromosome fusion, chromosome translocation, diploidization, dysploidy, karyotype evolution, polyploidy, whole-genome duplication


  • Mikula O, Šumbera R, Aghová T, Mbau J, Katakweba A, Sabuni C et al. (2016)

    Evolutionary history and species diversity of African pouched mice (Rodentia: Nesomyidae: Saccostomus )

    Zoologica Scripta.

    We explore diversity of African pouched mice, genus Saccostomus (Rodentia, Nesomyidae), by sampling molecular and morphological variation across their continental-scale distribution in southern and eastern African savannahs and woodlands. Both mitochondrial (cytochrome b) and nuclear DNA (IRBP, RAG1) as well as skull morphology confirm the distinction between two recognized species, S. campestris and S. mearnsi, with disjunct distribution in the Zambezian and Somali–Maasai bioregions, respectively. Molecular dating suggests the divergence of these taxa occurred in the Early Pliocene, 3.9 Ma before present, whereas the deepest divergences within each of them are only as old as 2.0 Ma for S. mearnsi and 1.4 Ma for S. campestris. Based on cytochrome b phylogeny, we defined five clades (three within S. campestris, two in S. mearnsi) whose species status was considered in the light of nuclear DNA markers and morphology. We conclude that S. campestris group consists of two subspecies S. campestris campestris (Peters, 1846; comprising two cytochrome b clades) and S. campestris mashonae (de Winton, 1897) that are moderately differentiated, albeit distinct in IRBP and skull form. They likely hybridize to a limited extent along the Kafue–Zambezi Rivers. Saccostomus mearnsi group consists of two species, S. mearnsi (Heller, 1910) and S. umbriventer (Miller, 1910), that are markedly differentiated in both nuclear markers and skull form and may possibly co-occur in south-western Kenya and north-eastern Tanzania. Analysis of historical demography suggests both subspecies of S. campestris experienced population expansion dated to the Last Glacial. In the present range of S. campestris group, the distribution modelling suggests a moderate fragmentation of suitable habitats during the last glacial cycle, whereas in the range of S. mearnsi group it predicts substantial shifts of its occurrence in the same period.

    Keywords: Brassicaceae, centromere loss, chromosome fusion, chromosome translocation, diploidization, dysploidy, karyotype evolution, polyploidy, whole-genome duplication


  • Oberlander K, Dreyer L, Goldblatt P, Suda J, Linder H (2016)

    Species-rich and polyploid-poor: Insights into the evolutionary role of whole-genome duplication from the Cape flora biodiversity hotspot

    American Journal of Botany 103(7) 1336-1347.

    PREMISE OF THE STUDY: Whole-genome duplication (WGD) in angiosperms has been hypothesized to be advantageous in unstable environments and/or to increase diversification rates, leading to radiations. Under the first hypothesis, floras in stable environments are predicted to have lower proportions of polyploids than highly, recently disturbed floras, whereas species-rich floras would be expected to have higher than expected proportions of polyploids under the second. The South African Cape flora is used to discriminate between these two hypotheses because it features a hyperdiverse flora predominantly generated by a limited number of radiations (Cape clades), against a backdrop of climatic and geological stability. METHODS: We compiled all known chromosome counts for species in 21 clades present in the Cape (1653 species, including 24 Cape clades), inferred ploidy levels for these species by inspection or derived from the primary literature, and compared Cape to non-Cape ploidy levels in these clades (17,520 species) using G tests. KEY RESULTS: The Cape flora has anomalously low proportions of polyploids compared with global levels. This pattern is consistently observed across nearly half the clades and across global latitudinal gradients, although individual lineages seem to be following different paths to low levels of WGD and to differing degrees. CONCLUSIONS: This pattern shows that the diversity of the Cape flora is the outcome of primarily diploid radiations and supports the hypothesis that WGD may be rare in stable environments.

    Keywords: Cape flora, diversification, environmental stability, evolutionary radiation, polyploidy, whole-genome duplication


  • Čuda J, Skálová H, Janovský Z, Pyšek P (2016)

    Juvenile biological traits of Impatiens species are more strongly associated with naturalization in temperate climate than their adult traits

    Perspectives in Plant Ecology, Evolution and Systematics 20 1-10.

    Potentially invasive species can be identified before they start to spread by comparing their traits with those of successful invaders. A powerful tool for delimiting the traits associated with invasiveness are analyses of a number of species of the same genus, where it is more likely to detect relevant differences because of elimination of biases that constrain the search for such traits in whole floras. Since the influence of traits on invasion success may differ with respect to the stage of the plant's life cycle, comparative studies should address the whole life cycle, including early stages. Here we studied which biological traits are associated with the ability to naturalize within the genus Impatiens, how frequency of planting affects naturalization success, and whether naturalized species with biological traits similar to the native representative of this genus are more successful. The genus Impatiens includes a number of cultivated species popular in horticulture, among them several widespread invaders. We used one native and 10 alien annual taxa. This data set involved all commonly cultivated species, and representatives of different invasion status in Europe. In garden experiments and climatic chambers we measured seed mass, time to germination, percentage of seeds germinated, seedling growth rate, total seedling biomass, seedling root/total biomass ratio, adult biomass and fecundity. These traits and planting frequency were used to explain the invasion success of the species, expressed as (i) invasion status in Europe and (ii) the number of global temperate regions in which the species has been reported as naturalized. The frequency of planting was used as a proxy of propagule pressure to separate this potentially biasing factor known to affect plant invasiveness from the effect of plant traits. We found that both species traits and frequency of planting were correlated with naturalization. Species naturalized in many temperate regions of the world had heavier seeds, high seedling growth rate and allocated low proportion of seedling biomass to roots. Importantly, common planting was more strongly correlated with naturalization success than with biological traits. Impatiens species naturalized in Europe exhibited better seed germination in the common garden, and it took a longer time for the seeds to germinate. Species escaped from cultivation but occurring only as casuals in Europe had heavy seeds and invested more resources into shoots than roots, whereas species not escaping from cultivation were characterized by fast seed germination and light seed. In general, traits linked to early stages of the life cycle were more strongly associated with invasion success than those of the adults. Frequently planted species tend to naturalize more easily than those planted scarcely. The successful invaders share traits similar to the one native Impatiens species in Europe and those with traits distinct from it do not invade. Our results indicate that many Impatiens species represent potential invaders should their planting become more widespread; this prediction is supported by the fact that Impatiens species included in the experiment completed their life cycles in an experimental garden in central Europe.

    Keywords: Alien species, Balsam, Congener, Limiting similarity, Naturalization, Plant invasion, Seedling traits


  • Dellinger A, Essl F, Hojsgaard D, Kirchheimer B, Klatt S, Dawson W et al. (2015)

    Niche dynamics of alien species do not differ among sexual and apomictic flowering plants.

    The New phytologist.

    Biological invasions can be associated with shifts of the species' climatic niches but the incidence of such shifts is under debate. The reproductive system might be a key factor controlling such shifts because it influences a species' evolutionary flexibility. However, the link between reproductive systems and niche dynamics in plant invasions has been little studied so far. We compiled global occurrence data sets of 13 congeneric sexual and apomictic species pairs, and used principal components analysis (PCA) and kernel smoothers to compare changes in climatic niche optima, breadths and unfilling/expansion between native and alien ranges. Niche change metrics were compared between sexual and apomictic species. All 26 species showed changes in niche optima and/or breadth and 14 species significantly expanded their climatic niches. However, we found no effect of the reproductive system on niche dynamics. Instead, species with narrower native niches showed higher rates of niche expansion in the alien ranges. Our results suggest that niche shifts are frequent in plant invasions but evolutionary potential may not be of major importance for such shifts. Niche dynamics rather appear to be driven by changes of the realized niche without adaptive change of the fundamental climatic niche.

    Keywords: adaptation, asexual reproduction, niche shifts, plant invasion, reproductive system, species distribution modelling


  • Kleckova I, Cesanek M, Fric Z, Pellissier L (2015)

    Diversification of the cold-adapted butterfly genus Oeneis related to Holarctic biogeography and climatic niche shifts.

    Molecular phylogenetics and evolution 92 255-265.

    Both geographical and ecological speciation interact during the evolution of a clade, but the relative contribution of these processes is rarely assessed for cold-dwelling biota. Here, we investigate the role of biogeography and the evolution of ecological traits on the diversification of the Holarctic arcto-alpine butterfly genus Oeneis (Lepidoptera: Satyrinae). We reconstructed the molecular phylogeny of the genus based on one mitochondrial (COI) and three nuclear (GAPDH, RpS5, wingless) genes. We inferred the biogeographical scenario and the ancestral state reconstructions of climatic and habitat requirements. Within the genus, we detected five main species groups corresponding to the taxonomic division and further paraphyletic position of Neominois (syn. n.). Next, we transferred O. aktashi from the hora to the polixenes species group on the bases of molecular relationships. We found that the genus originated in the dry grasslands of the mountains of Central Asia and dispersed over the Beringian Land Bridges to North America several times independently. Holarctic mountains, in particular the Asian Altai Mts. and Sayan Mts., host the oldest lineages and most of the species diversity. Arctic species are more recent, with Pliocene or Pleistocene origin. We detected a strong phylogenetic signal for the climatic niche, where one lineage diversified towards colder conditions. Altogether, our results indicate that both dispersal across geographical areas and occupation of distinct climatic niches promoted the diversification of the Oeneis genus.

    Keywords: Lepidoptera, Molecular systematics, Niche evolution, Quaternary, Satyrinae, Temperate


  • Rijal D, Alm T, Jahodová , Stenøien H, Alsos I (2015)

    Reconstructing the invasion history of Heracleum persicum (Apiaceae) into Europe.

    Molecular ecology.

    Sparse, incomplete and inappropriate historical records of invasive species often hamper invasive species management interventions. Population genetic analyses of invaders might provide a suitable context for the identification of their source populations and possible introduction routes. Here, we describe the population genetics of Heracleum persicum Desf. ex Fisch and trace its route of introduction into Europe. Microsatellite markers revealed a significantly higher genetic diversity of H. persicum in its native range, and the loss of diversity in the introduced range may be attributed to a recent genetic bottleneck. Bayesian cluster analysis on regional levels identified three and two genetic clusters in the native and the introduced ranges, respectively. A global structure analysis revealed two worldwide distinct genetic groups: one primarily in Iran and Denmark, the other primarily in Norway. There were also varying degrees of admixture in England, Sweden, Finland and Latvia. Approximate Bayesian computation indicated two independent introductions of H. persicum from Iran to Europe: the first one in Denmark and the second one in England. Finland was subsequently colonized by English populations. In contrast to the contemporary hypothesis of English origin of Norwegian populations, we found Finland to be a more likely source for Norwegian populations, a scenario supported by higher estimated historical migration from Finland to Norway. Genetic diversity per se is not a primary determinant of invasiveness in H. persicum. Our results indicate that, due to either pre-adaptations or rapid local adaptations, introduced populations may have acquired invasiveness after subsequent introductions, once a suitable environment was encountered. This article is protected by copyright. All rights reserved.

    Keywords: Approximate Bayesian Computation, biodiversity, genetic variation, giant hogweeds, invasive alien species, population genetics